Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47094 * 272.76554 * 3 2 1 5 5 C 1.37103 * 119.99881 * 264.14332 * 4 3 2 6 6 H 1.08002 * 120.00049 * 197.42703 * 5 4 3 7 7 C 1.38955 * 120.00064 * 17.42845 * 5 4 3 8 8 N 1.31413 * 119.99867 * 21.53360 * 7 5 4 9 9 Si 1.86792 * 119.99815 * 201.54217 * 7 5 4 10 10 H 1.48499 * 109.47454 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47310 * 119.99828 * 9 7 5 12 12 H 1.48502 * 109.47021 * 239.99377 * 9 7 5 13 13 C 1.34774 * 120.00180 * 84.14107 * 4 3 2 14 14 O 1.21293 * 120.00021 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99826 * 0.02562 * 13 4 3 16 16 N 1.46505 * 109.46909 * 179.97438 * 15 13 4 17 17 C 1.46493 * 120.00346 * 269.99811 * 16 15 13 18 18 C 1.39681 * 119.99797 * 90.00410 * 16 15 13 19 19 C 1.38900 * 120.07271 * 180.02562 * 18 16 15 20 20 C 1.38114 * 119.92605 * 179.97438 * 19 18 16 21 21 C 1.38288 * 120.06762 * 359.97438 * 20 19 18 22 22 C 1.38282 * 120.15415 * 0.27622 * 21 20 19 23 23 C 1.38107 * 120.07103 * 359.44706 * 22 21 20 24 24 H 4.40637 * 5.51428 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46769 * 152.76632 * 3 2 1 26 26 H 1.08995 * 109.47001 * 32.76559 * 3 2 1 27 27 H 0.97000 * 120.00017 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47195 * 59.99715 * 15 13 4 29 29 H 1.08996 * 109.47273 * 299.99805 * 15 13 4 30 30 H 1.09000 * 109.47725 * 270.00412 * 17 16 15 31 31 H 1.09004 * 109.47190 * 30.00493 * 17 16 15 32 32 H 1.09000 * 109.47175 * 150.00062 * 17 16 15 33 33 H 1.07999 * 120.04182 * 359.97438 * 19 18 16 34 34 H 1.07991 * 119.96441 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.91987 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.96150 * 179.70010 * 22 21 20 37 37 H 1.07997 * 120.03412 * 180.27143 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0658 1.3796 5 6 3.4766 1.0849 2.0418 6 1 4.0890 1.0351 2.9300 7 6 3.0354 2.3153 1.5702 8 7 1.9840 2.3792 0.7844 9 14 3.9371 3.8783 2.0529 10 1 5.0791 3.5376 2.9389 11 1 4.4424 4.5556 0.8317 12 1 3.0064 4.7847 2.7723 13 6 3.2472 -1.2580 1.9978 14 8 3.6520 -1.3130 3.1399 15 6 2.8715 -2.5228 1.2698 16 7 3.0827 -3.6743 2.1506 17 6 4.3782 -4.3581 2.1646 18 6 2.0487 -4.1203 2.9770 19 6 2.2474 -5.2116 3.8131 20 6 1.2230 -5.6497 4.6294 21 6 0.0009 -5.0028 4.6152 22 6 -0.2019 -3.9193 3.7802 23 6 0.8200 -3.4726 2.9657 24 1 -1.0500 0.0002 0.0001 25 1 3.0089 0.9146 -0.4703 26 1 3.0097 -0.8633 -0.5562 27 1 1.6758 3.2382 0.4555 28 1 3.4922 -2.6278 0.3799 29 1 1.8225 -2.4760 0.9776 30 1 4.3756 -5.1569 1.4230 31 1 5.1680 -3.6451 1.9277 32 1 4.5552 -4.7809 3.1535 33 1 3.2017 -5.7169 3.8250 34 1 1.3769 -6.4978 5.2800 35 1 -0.7984 -5.3472 5.2548 36 1 -1.1592 -3.4194 3.7681 37 1 0.6623 -2.6236 2.3170 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798801723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = 62.772215 kcal Electronic energy + Delta-G solvation = -20724.802317 eV Core-core repulsion = 17662.247602 eV Total energy + Delta-G solvation = -3062.554715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96606 -39.88480 -37.33996 -36.52167 -34.05408 -33.02839 -32.00520 -30.91632 -29.70642 -28.18964 -26.75544 -25.52795 -23.16697 -22.13103 -20.64844 -19.69371 -18.63922 -18.39003 -18.06048 -16.75722 -16.52684 -16.41288 -16.02508 -15.73567 -15.17951 -15.09164 -14.54301 -14.45416 -14.14372 -14.12540 -13.83089 -13.52216 -13.40227 -12.91028 -12.85882 -12.75975 -12.45468 -12.23479 -12.15357 -11.65640 -11.20472 -11.16460 -10.95497 -10.64393 -10.23700 -9.82880 -9.76796 -8.36020 -8.13355 -5.92652 0.59444 0.77766 1.33135 1.40998 1.53654 1.86224 2.07033 2.26758 2.32038 2.37966 3.03334 3.04344 3.26464 3.85516 3.95922 4.01482 4.12625 4.17707 4.27912 4.40521 4.46487 4.65801 4.67405 4.69735 4.75325 4.88725 4.93389 4.96953 5.19211 5.41624 5.42038 5.46481 5.65508 5.78485 5.99173 6.07874 6.30464 6.48711 6.62301 7.13333 7.16054 7.42262 7.99739 8.65646 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.005437 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.548654 B = 5148.521913 C = 5425.387883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.155 4.155 3 C 0.232 3.768 4 N -0.452 5.452 5 C -0.349 4.349 6 H 0.069 0.931 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.981 3.019 10 H -0.277 1.277 11 H -0.263 1.263 12 H -0.282 1.282 13 C 0.422 3.578 14 O -0.619 6.619 15 C 0.123 3.877 16 N -0.617 5.617 17 C 0.097 3.903 18 C 0.208 3.792 19 C -0.209 4.209 20 C -0.075 4.075 21 C -0.190 4.190 22 C -0.084 4.084 23 C -0.220 4.220 24 H 0.231 0.769 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.272 0.728 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -12.621 -2.447 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.156 4.156 3 C 0.109 3.891 4 N -0.172 5.172 5 C -0.477 4.477 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.805 3.195 10 H -0.202 1.202 11 H -0.187 1.187 12 H -0.208 1.208 13 C 0.211 3.789 14 O -0.505 6.505 15 C -0.004 4.004 16 N -0.326 5.326 17 C -0.045 4.045 18 C 0.106 3.894 19 C -0.231 4.231 20 C -0.094 4.094 21 C -0.209 4.209 22 C -0.102 4.102 23 C -0.242 4.242 24 H 0.247 0.753 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.229 -12.441 -2.128 12.681 hybrid contribution 0.083 1.593 0.291 1.622 sum -1.146 -10.847 -1.837 11.061 Atomic orbital electron populations 1.25125 0.96357 1.04528 1.00286 1.23464 0.95016 0.97190 0.99976 1.18360 0.84551 1.02744 0.83396 1.43972 1.56136 1.05245 1.11807 1.19511 1.31518 0.84297 1.12374 0.91263 1.25912 0.95435 1.01304 0.97254 1.70178 1.19784 1.26830 1.34021 0.85084 0.78226 0.77757 0.78446 1.20183 1.18720 1.20807 1.21706 0.83431 0.86386 0.87424 1.90488 1.52234 1.87359 1.20424 1.21207 1.03345 0.83080 0.92799 1.46164 1.12159 1.30846 1.43456 1.21728 0.83046 0.96957 1.02751 1.18108 0.87813 0.93166 0.90345 1.20926 1.01522 0.99563 1.01131 1.21239 0.92245 0.99112 0.96783 1.21180 0.98925 0.98305 1.02528 1.21105 0.98129 0.96339 0.94641 1.20781 0.94441 1.03017 1.05991 0.75265 0.88778 0.88158 0.91828 0.86208 0.88699 0.90541 0.92429 0.91131 0.84492 0.83217 0.84038 0.85288 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.58 19.25 74.32 1.43 -8.15 16 2 C -0.15 -6.67 10.88 31.13 0.34 -6.33 16 3 C 0.23 9.89 4.91 84.57 0.42 10.31 16 4 N -0.45 -22.91 2.60 -645.43 -1.68 -24.59 16 5 C -0.35 -19.77 9.33 84.04 0.78 -18.99 16 6 H 0.07 4.29 7.38 -2.91 -0.02 4.27 16 7 C 0.00 0.23 4.87 84.93 0.41 0.65 16 8 N -0.87 -45.21 9.48 21.66 0.21 -45.00 16 9 Si 0.98 42.27 29.60 68.60 2.03 44.30 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.42 20.69 7.63 87.66 0.67 21.36 16 14 O -0.62 -35.89 16.08 -3.07 -0.05 -35.94 16 15 C 0.12 4.54 4.24 85.63 0.36 4.91 16 16 N -0.62 -21.53 2.50 -726.58 -1.81 -23.35 16 17 C 0.10 2.65 10.19 127.77 1.30 3.95 16 18 C 0.21 7.42 6.55 38.21 0.25 7.67 16 19 C -0.21 -6.22 9.21 22.40 0.21 -6.01 16 20 C -0.08 -1.94 10.04 22.25 0.22 -1.72 16 21 C -0.19 -5.05 10.04 22.29 0.22 -4.83 16 22 C -0.08 -2.63 10.04 22.25 0.22 -2.41 16 23 C -0.22 -8.20 9.21 22.40 0.21 -7.99 16 24 H 0.23 7.06 7.80 -4.42 -0.03 7.03 16 25 H 0.09 4.29 6.44 -2.39 -0.02 4.27 16 26 H 0.10 3.34 6.68 -2.39 -0.02 3.33 16 27 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 28 H 0.12 3.54 7.35 -2.39 -0.02 3.52 16 29 H 0.10 3.48 5.56 -2.39 -0.01 3.47 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.64 8.07 -2.38 -0.02 1.62 16 32 H 0.07 1.82 6.20 -2.39 -0.01 1.80 16 33 H 0.14 3.43 6.14 -2.91 -0.02 3.41 16 34 H 0.15 2.74 8.06 -2.92 -0.02 2.72 16 35 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.10 3.94 6.14 -2.91 -0.02 3.92 16 Total: -1.00 -71.86 316.36 6.82 -65.04 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 1.07 Total: 27.11 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 7.05 Total: -7.57 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -3.29 Total: -92.94 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.05 Total: -35.94 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -71.86 6.82 -65.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798801723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.811 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds