Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47476 * 46.76148 * 3 2 1 5 5 C 1.37093 * 120.00243 * 263.92589 * 4 3 2 6 6 H 1.07993 * 120.00059 * 199.75892 * 5 4 3 7 7 C 1.38954 * 119.99826 * 19.75353 * 5 4 3 8 8 N 1.31413 * 120.00085 * 21.74805 * 7 5 4 9 9 Si 1.86804 * 120.00125 * 201.74995 * 7 5 4 10 10 H 1.48503 * 109.46668 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47094 * 119.99773 * 9 7 5 12 12 H 1.48495 * 109.47025 * 240.00313 * 9 7 5 13 13 C 1.34779 * 119.99736 * 83.92542 * 4 3 2 14 14 O 1.21295 * 119.99769 * 180.27313 * 13 4 3 15 15 C 1.50697 * 120.00017 * 0.02562 * 13 4 3 16 16 C 1.53002 * 109.46861 * 180.02562 * 15 13 4 17 17 H 1.09003 * 109.47510 * 55.00272 * 16 15 13 18 18 C 1.53001 * 109.47295 * 294.99487 * 16 15 13 19 19 C 1.50701 * 109.47044 * 175.00011 * 16 15 13 20 20 C 1.38650 * 120.79208 * 59.71693 * 19 16 15 21 21 C 1.38207 * 119.16183 * 179.75687 * 20 19 16 22 22 N 1.31868 * 120.76294 * 0.53039 * 21 20 19 23 23 C 1.31874 * 121.72912 * 359.74494 * 22 21 20 24 24 C 1.38200 * 120.76129 * 359.97332 * 23 22 21 25 25 H 4.40634 * 5.51479 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47085 * 286.75844 * 3 2 1 27 27 H 1.09006 * 109.47159 * 166.76646 * 3 2 1 28 28 H 0.97001 * 119.99883 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47033 * 299.99515 * 15 13 4 30 30 H 1.08997 * 109.47684 * 60.00136 * 15 13 4 31 31 H 1.08996 * 109.46935 * 300.00407 * 18 16 15 32 32 H 1.08997 * 109.46863 * 60.00035 * 18 16 15 33 33 H 1.08996 * 109.47336 * 179.97438 * 18 16 15 34 34 H 1.07997 * 120.41994 * 0.02562 * 20 19 16 35 35 H 1.07994 * 119.61834 * 180.24847 * 21 20 19 36 36 H 1.07990 * 119.61669 * 179.97438 * 23 22 21 37 37 H 1.07995 * 120.41633 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -0.9453 -1.0062 5 6 3.4823 -2.2192 -0.6378 6 1 4.1259 -2.8087 -1.2739 7 6 3.0066 -2.7519 0.5542 8 7 1.9253 -2.2543 1.1110 9 14 3.9041 -4.1755 1.3650 10 1 5.0841 -4.5485 0.5442 11 1 4.3533 -3.7695 2.7210 12 1 2.9888 -5.3397 1.4746 13 6 3.2428 -0.5631 -2.2941 14 8 3.6428 -1.3478 -3.1281 15 6 2.8613 0.8375 -2.6990 16 6 3.0759 1.0095 -4.2041 17 1 2.5251 0.2368 -4.7404 18 6 4.5672 0.8879 -4.5238 19 6 2.5801 2.3673 -4.6302 20 6 3.1194 3.5229 -4.0860 21 6 2.6428 4.7507 -4.5050 22 7 1.6802 4.8299 -5.4028 23 6 1.1401 3.7522 -5.9375 24 6 1.5695 2.4906 -5.5716 25 1 -1.0498 -0.0001 -0.0004 26 1 3.0094 -0.2955 0.9840 27 1 3.0088 1.0012 -0.2353 28 1 1.5931 -2.6264 1.9429 29 1 1.8122 1.0118 -2.4597 30 1 3.4810 1.5534 -2.1591 31 1 5.1179 1.6607 -3.9875 32 1 4.9259 -0.0941 -4.2156 33 1 4.7201 1.0100 -5.5961 34 1 3.9051 3.4644 -3.3473 35 1 3.0605 5.6555 -4.0890 36 1 0.3533 3.8568 -6.6697 37 1 1.1230 1.6117 -6.0127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798804235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = 58.408436 kcal Electronic energy + Delta-G solvation = -20393.691783 eV Core-core repulsion = 17330.947840 eV Total energy + Delta-G solvation = -3062.743943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25160 -38.79317 -35.87354 -34.76160 -32.17685 -31.25101 -31.20070 -30.65427 -27.67954 -26.38087 -24.65007 -23.84120 -23.29496 -20.64504 -18.78116 -17.86877 -17.01393 -16.59461 -16.12638 -15.79256 -15.43457 -14.69136 -14.62236 -14.17845 -13.88914 -13.71326 -13.34154 -13.21598 -12.76733 -12.34296 -12.25764 -11.92265 -11.70218 -11.60992 -11.08719 -11.05542 -10.86230 -10.54156 -10.46243 -10.30548 -9.43815 -9.40977 -9.38818 -9.24261 -9.11287 -8.93694 -8.38570 -7.86669 -6.35414 -3.89403 1.17788 1.32815 3.11319 3.23950 3.30176 3.64267 3.86176 3.89752 4.02237 4.16071 4.47673 4.61034 4.80436 5.00420 5.08155 5.17640 5.20368 5.32931 5.43955 5.46738 5.57522 5.75609 5.82796 5.89950 5.96662 6.04230 6.12938 6.27733 6.31022 6.38163 6.65111 6.67776 6.73854 6.80857 6.99502 7.54156 7.99260 8.03903 8.39675 8.78667 9.11334 9.33307 9.88589 10.65275 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.004682 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.153884 B = 5978.417226 C = 6515.180759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.114 4.114 3 C 0.233 3.767 4 N -0.440 5.440 5 C -0.317 4.317 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.860 5.860 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.453 3.547 14 O -0.580 6.580 15 C -0.124 4.124 16 C -0.036 4.036 17 H 0.088 0.912 18 C -0.145 4.145 19 C -0.022 4.022 20 C -0.168 4.168 21 C 0.095 3.905 22 N -0.496 5.496 23 C 0.095 3.905 24 C -0.171 4.171 25 H 0.198 0.802 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.267 0.733 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 10.695 -5.703 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.109 3.891 4 N -0.159 5.159 5 C -0.444 4.444 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.242 3.758 14 O -0.464 6.464 15 C -0.164 4.164 16 C -0.055 4.055 17 H 0.106 0.894 18 C -0.202 4.202 19 C -0.030 4.030 20 C -0.188 4.188 21 C -0.062 4.062 22 N -0.206 5.206 23 C -0.061 4.061 24 C -0.191 4.191 25 H 0.216 0.784 26 H 0.123 0.877 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.259 11.072 -6.180 12.683 hybrid contribution 0.112 -1.582 1.004 1.877 sum 0.371 9.490 -5.176 10.816 Atomic orbital electron populations 1.24261 0.95379 1.04917 1.03208 1.23142 0.94348 0.96266 0.97847 1.18205 0.84321 0.91085 0.95468 1.43706 1.55934 1.11478 1.04738 1.19666 1.28326 0.90906 1.05491 0.87856 1.25302 0.94989 0.98815 0.98142 1.70098 1.17917 1.42438 1.19335 0.85998 0.79791 0.80713 0.79015 1.19201 1.20632 1.20909 1.19982 0.84136 0.89210 0.82455 1.90483 1.51205 1.55127 1.49616 1.21623 1.02595 0.97022 0.95158 1.19927 0.98084 0.91704 0.95785 0.89402 1.21926 0.93795 1.04089 1.00358 1.20549 0.93182 0.96109 0.93141 1.22046 1.01964 0.92985 1.01782 1.22701 0.92836 0.97255 0.93360 1.67639 1.09822 1.33367 1.09726 1.22693 0.97911 0.87947 0.97573 1.22130 0.98395 0.99281 0.99312 0.78443 0.87650 0.91979 0.92215 0.90144 0.90404 0.93432 0.89207 0.93508 0.84830 0.83041 0.83060 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.32 19.25 29.55 0.57 -4.75 16 2 C -0.11 -2.52 10.75 -37.12 -0.40 -2.92 16 3 C 0.23 4.98 4.91 -6.83 -0.03 4.95 16 4 N -0.44 -10.71 2.60 -117.93 -0.31 -11.02 16 5 C -0.32 -8.48 9.28 -14.93 -0.14 -8.62 16 6 H 0.10 2.92 7.42 -52.49 -0.39 2.53 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.31 9.59 55.50 0.53 -21.78 16 9 Si 0.92 20.10 29.61 -169.99 -5.03 15.07 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.45 10.37 7.28 -10.99 -0.08 10.29 16 14 O -0.58 -14.89 13.64 5.54 0.08 -14.81 16 15 C -0.12 -2.16 3.53 -27.88 -0.10 -2.26 16 16 C -0.04 -0.57 2.24 -91.77 -0.21 -0.77 16 17 H 0.09 1.50 7.76 -51.93 -0.40 1.09 16 18 C -0.14 -2.20 8.76 37.16 0.33 -1.88 16 19 C -0.02 -0.30 4.80 -104.31 -0.50 -0.80 16 20 C -0.17 -2.06 8.89 -39.44 -0.35 -2.41 16 21 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 22 N -0.50 -6.58 10.36 -13.26 -0.14 -6.72 16 23 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 24 C -0.17 -2.15 9.76 -39.44 -0.39 -2.54 16 25 H 0.20 3.34 7.80 -54.10 -0.42 2.91 16 26 H 0.11 2.38 6.60 -51.93 -0.34 2.04 16 27 H 0.06 1.09 6.70 -51.93 -0.35 0.75 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.08 1.44 7.49 -51.93 -0.39 1.05 16 30 H 0.08 1.19 6.93 -51.93 -0.36 0.83 16 31 H 0.05 0.64 7.50 -51.93 -0.39 0.25 16 32 H 0.09 1.64 5.96 -51.93 -0.31 1.33 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.13 1.44 7.35 -52.49 -0.39 1.05 16 35 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 1.48 8.01 -52.49 -0.42 1.06 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -30.74 315.83 -6.44 -37.18 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.56 Total: 6.40 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.77 Total: -9.08 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.09 Total: -39.52 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.08 Total: -14.81 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.74 -6.44 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.589 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds