Wall clock time and date at job start Mon Mar 30 2020 01:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47476 * 46.76148 * 3 2 1 5 5 C 1.37093 * 120.00243 * 263.92589 * 4 3 2 6 6 H 1.07993 * 120.00059 * 199.75892 * 5 4 3 7 7 C 1.38954 * 119.99826 * 19.75353 * 5 4 3 8 8 N 1.31413 * 120.00085 * 21.74805 * 7 5 4 9 9 Si 1.86804 * 120.00125 * 201.74995 * 7 5 4 10 10 H 1.48503 * 109.46668 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47094 * 119.99773 * 9 7 5 12 12 H 1.48495 * 109.47025 * 240.00313 * 9 7 5 13 13 C 1.34779 * 119.99736 * 83.92542 * 4 3 2 14 14 O 1.21295 * 119.99769 * 180.27313 * 13 4 3 15 15 C 1.50697 * 120.00017 * 0.02562 * 13 4 3 16 16 C 1.53002 * 109.46861 * 180.02562 * 15 13 4 17 17 H 1.09003 * 109.47510 * 55.00272 * 16 15 13 18 18 C 1.53001 * 109.47295 * 294.99487 * 16 15 13 19 19 C 1.50701 * 109.47044 * 175.00011 * 16 15 13 20 20 C 1.38650 * 120.79208 * 59.71693 * 19 16 15 21 21 C 1.38207 * 119.16183 * 179.75687 * 20 19 16 22 22 N 1.31868 * 120.76294 * 0.53039 * 21 20 19 23 23 C 1.31874 * 121.72912 * 359.74494 * 22 21 20 24 24 C 1.38200 * 120.76129 * 359.97332 * 23 22 21 25 25 H 4.40634 * 5.51479 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47085 * 286.75844 * 3 2 1 27 27 H 1.09006 * 109.47159 * 166.76646 * 3 2 1 28 28 H 0.97001 * 119.99883 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47033 * 299.99515 * 15 13 4 30 30 H 1.08997 * 109.47684 * 60.00136 * 15 13 4 31 31 H 1.08996 * 109.46935 * 300.00407 * 18 16 15 32 32 H 1.08997 * 109.46863 * 60.00035 * 18 16 15 33 33 H 1.08996 * 109.47336 * 179.97438 * 18 16 15 34 34 H 1.07997 * 120.41994 * 0.02562 * 20 19 16 35 35 H 1.07994 * 119.61834 * 180.24847 * 21 20 19 36 36 H 1.07990 * 119.61669 * 179.97438 * 23 22 21 37 37 H 1.07995 * 120.41633 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -0.9453 -1.0062 5 6 3.4823 -2.2192 -0.6378 6 1 4.1259 -2.8087 -1.2739 7 6 3.0066 -2.7519 0.5542 8 7 1.9253 -2.2543 1.1110 9 14 3.9041 -4.1755 1.3650 10 1 5.0841 -4.5485 0.5442 11 1 4.3533 -3.7695 2.7210 12 1 2.9888 -5.3397 1.4746 13 6 3.2428 -0.5631 -2.2941 14 8 3.6428 -1.3478 -3.1281 15 6 2.8613 0.8375 -2.6990 16 6 3.0759 1.0095 -4.2041 17 1 2.5251 0.2368 -4.7404 18 6 4.5672 0.8879 -4.5238 19 6 2.5801 2.3673 -4.6302 20 6 3.1194 3.5229 -4.0860 21 6 2.6428 4.7507 -4.5050 22 7 1.6802 4.8299 -5.4028 23 6 1.1401 3.7522 -5.9375 24 6 1.5695 2.4906 -5.5716 25 1 -1.0498 -0.0001 -0.0004 26 1 3.0094 -0.2955 0.9840 27 1 3.0088 1.0012 -0.2353 28 1 1.5931 -2.6264 1.9429 29 1 1.8122 1.0118 -2.4597 30 1 3.4810 1.5534 -2.1591 31 1 5.1179 1.6607 -3.9875 32 1 4.9259 -0.0941 -4.2156 33 1 4.7201 1.0100 -5.5961 34 1 3.9051 3.4644 -3.3473 35 1 3.0605 5.6555 -4.0890 36 1 0.3533 3.8568 -6.6697 37 1 1.1230 1.6117 -6.0127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798804235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:29 Heat of formation + Delta-G solvation = 41.303875 kcal Electronic energy + Delta-G solvation = -20394.433492 eV Core-core repulsion = 17330.947840 eV Total energy + Delta-G solvation = -3063.485652 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31102 -40.43830 -37.42578 -36.29255 -34.01696 -33.01130 -32.14759 -31.76659 -29.18332 -28.07556 -26.31605 -25.05985 -24.25809 -21.93561 -20.37687 -19.64222 -18.45474 -18.22274 -17.30760 -17.07568 -16.48153 -16.31563 -16.20669 -15.88633 -15.06109 -14.92271 -14.72327 -14.35563 -14.12501 -14.01615 -13.85724 -13.47952 -13.29777 -12.81411 -12.72123 -12.56026 -12.27580 -12.19668 -12.11140 -11.70417 -11.13004 -11.07617 -10.64958 -10.46885 -10.37197 -10.18032 -10.01117 -9.77357 -8.29929 -5.91190 0.27505 0.34081 1.35583 1.43378 1.56057 1.91727 2.16519 2.33537 2.39163 2.92197 3.06708 3.17077 3.64057 3.70943 3.76672 3.89610 4.08899 4.17470 4.26814 4.28046 4.29710 4.46959 4.63917 4.74754 4.79274 4.83621 4.95251 4.97236 5.00066 5.12492 5.19689 5.41804 5.46342 5.50479 5.57960 5.84690 6.10254 6.47301 7.08267 7.14791 7.18625 7.46128 8.03481 8.68630 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.004682 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.153884 B = 5978.417226 C = 6515.180759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.151 4.151 3 C 0.235 3.765 4 N -0.455 5.455 5 C -0.350 4.350 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.873 5.873 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.266 1.266 12 H -0.283 1.283 13 C 0.445 3.555 14 O -0.617 6.617 15 C -0.109 4.109 16 C -0.028 4.028 17 H 0.065 0.935 18 C -0.139 4.139 19 C -0.034 4.034 20 C -0.169 4.169 21 C 0.093 3.907 22 N -0.515 5.515 23 C 0.093 3.907 24 C -0.179 4.179 25 H 0.230 0.770 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.270 0.730 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.151 0.849 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 12.428 -5.370 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.153 4.153 3 C 0.112 3.888 4 N -0.173 5.173 5 C -0.477 4.477 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.510 5.510 9 Si 0.804 3.196 10 H -0.198 1.198 11 H -0.191 1.191 12 H -0.209 1.209 13 C 0.236 3.764 14 O -0.504 6.504 15 C -0.149 4.149 16 C -0.047 4.047 17 H 0.084 0.916 18 C -0.196 4.196 19 C -0.042 4.042 20 C -0.188 4.188 21 C -0.063 4.063 22 N -0.224 5.224 23 C -0.063 4.063 24 C -0.199 4.199 25 H 0.246 0.754 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.197 0.803 36 H 0.194 0.806 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.148 12.828 -5.835 14.094 hybrid contribution 0.186 -2.107 0.855 2.282 sum 0.038 10.721 -4.980 11.821 Atomic orbital electron populations 1.25100 0.96373 1.03535 1.01733 1.23476 0.95056 0.97567 0.99206 1.18275 0.84440 0.92092 0.93979 1.43911 1.56267 1.11252 1.05918 1.19554 1.29397 0.92446 1.06331 0.90724 1.25942 0.95300 1.00915 0.97885 1.70184 1.18243 1.43210 1.19359 0.85092 0.78323 0.77815 0.78360 1.19816 1.19093 1.20911 1.20917 0.82715 0.91076 0.81733 1.90459 1.52484 1.56853 1.50584 1.21542 1.02811 0.93754 0.96773 1.19756 0.98105 0.92679 0.94185 0.91613 1.21831 0.93747 1.02623 1.01409 1.20374 0.94260 0.95173 0.94385 1.22227 1.02148 0.92562 1.01887 1.23165 0.92236 0.98177 0.92729 1.67705 1.10481 1.33892 1.10350 1.23084 0.98176 0.87375 0.97689 1.22294 0.98275 1.00067 0.99267 0.75371 0.89355 0.88215 0.91986 0.90128 0.87630 0.91390 0.92765 0.92277 0.83167 0.80302 0.80628 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.82 19.25 74.32 1.43 -8.38 16 2 C -0.15 -6.53 10.75 31.13 0.33 -6.20 16 3 C 0.23 9.96 4.91 84.57 0.42 10.38 16 4 N -0.46 -22.52 2.60 -645.41 -1.68 -24.19 16 5 C -0.35 -19.30 9.28 84.04 0.78 -18.52 16 6 H 0.07 4.44 7.42 -2.91 -0.02 4.42 16 7 C 0.00 0.15 4.83 84.93 0.41 0.57 16 8 N -0.87 -45.20 9.59 21.66 0.21 -45.00 16 9 Si 0.98 41.60 29.61 68.60 2.03 43.63 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.45 20.73 7.28 87.66 0.64 21.37 16 14 O -0.62 -33.01 13.64 -3.08 -0.04 -33.05 16 15 C -0.11 -3.71 3.53 29.85 0.11 -3.60 16 16 C -0.03 -0.87 2.24 -11.54 -0.03 -0.89 16 17 H 0.07 2.29 7.76 -2.39 -0.02 2.27 16 18 C -0.14 -4.16 8.76 71.98 0.63 -3.53 16 19 C -0.03 -0.86 4.80 -19.67 -0.09 -0.95 16 20 C -0.17 -3.67 8.89 22.36 0.20 -3.47 16 21 C 0.09 1.94 11.18 84.68 0.95 2.88 16 22 N -0.51 -12.33 10.36 -195.85 -2.03 -14.35 16 23 C 0.09 2.03 11.18 84.68 0.95 2.98 16 24 C -0.18 -4.22 9.76 22.36 0.22 -4.00 16 25 H 0.23 7.09 7.80 -4.43 -0.03 7.06 16 26 H 0.09 4.01 6.60 -2.39 -0.02 3.99 16 27 H 0.10 3.35 6.70 -2.38 -0.02 3.33 16 28 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 29 H 0.08 2.78 7.49 -2.39 -0.02 2.76 16 30 H 0.11 2.99 6.93 -2.39 -0.02 2.97 16 31 H 0.07 1.71 7.50 -2.39 -0.02 1.70 16 32 H 0.05 2.03 5.96 -2.39 -0.01 2.02 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.15 2.69 7.35 -2.91 -0.02 2.67 16 35 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.18 2.79 8.06 -2.92 -0.02 2.77 16 37 H 0.14 2.98 8.01 -2.91 -0.02 2.96 16 Total: -1.00 -67.51 315.83 6.49 -61.02 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 1.07 Total: 23.31 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 6.94 Total: -11.37 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -3.50 Total: -83.54 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.04 Total: -33.05 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -67.51 6.49 -61.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.322 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds