Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46904 * 2 1 4 4 C 1.46505 * 119.99967 * 277.51632 * 3 2 1 5 5 C 1.50694 * 109.47265 * 269.99984 * 4 3 2 6 6 H 1.07996 * 120.00046 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99855 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99740 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99899 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47242 * 89.99825 * 9 7 5 11 11 H 1.48504 * 109.46660 * 209.99521 * 9 7 5 12 12 H 1.48497 * 109.47040 * 329.99398 * 9 7 5 13 13 C 1.34772 * 119.99976 * 97.52170 * 3 2 1 14 14 O 1.21552 * 120.00340 * 185.75809 * 13 3 2 15 15 C 1.47860 * 120.00312 * 5.75705 * 13 3 2 16 16 C 1.39698 * 120.07595 * 134.26580 * 15 13 3 17 17 C 1.38061 * 120.16387 * 180.23501 * 16 15 13 18 18 C 1.38092 * 120.29817 * 359.49259 * 17 16 15 19 19 C 1.50704 * 119.92571 * 180.23268 * 18 17 16 20 20 C 1.39712 * 120.13925 * 0.51164 * 18 17 16 21 21 C 1.43201 * 120.07760 * 179.72805 * 20 18 17 22 22 N 5.34641 * 67.08441 * 113.51904 * 2 1 3 23 23 C 1.39295 * 120.06936 * 314.25098 * 15 13 3 24 24 H 1.09002 * 109.47180 * 69.41596 * 1 2 3 25 25 H 1.08997 * 109.47255 * 189.41688 * 1 2 3 26 26 H 1.08999 * 109.47281 * 309.41377 * 1 2 3 27 27 H 1.09001 * 109.46610 * 240.00416 * 2 1 3 28 28 H 1.08999 * 109.47134 * 119.99879 * 2 1 3 29 29 H 1.08999 * 109.47093 * 30.00591 * 4 3 2 30 30 H 1.09000 * 109.46688 * 150.00331 * 4 3 2 31 31 H 0.97000 * 119.99667 * 180.02562 * 8 7 5 32 32 H 1.08003 * 119.91835 * 359.96250 * 16 15 13 33 33 H 1.07998 * 119.85227 * 179.72561 * 17 16 15 34 34 H 1.08999 * 109.46880 * 270.27447 * 19 18 17 35 35 H 1.08998 * 109.47121 * 30.27624 * 19 18 17 36 36 H 1.09005 * 109.46377 * 150.27672 * 19 18 17 37 37 H 1.07996 * 120.14930 * 359.97438 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1060 2.1272 -1.2579 5 6 3.4640 1.9135 -1.8750 6 1 4.1892 1.2846 -1.3801 7 6 3.7804 2.5201 -3.0722 8 7 4.9655 2.3332 -3.6110 9 14 2.5258 3.6073 -3.9286 10 1 2.6842 5.0081 -3.4620 11 1 2.7395 3.5475 -5.3970 12 1 1.1566 3.1304 -3.6078 13 6 2.3869 1.9656 1.1571 14 8 2.6922 3.1421 1.1737 15 6 2.4201 1.1758 2.4066 16 6 3.5162 1.2727 3.2673 17 6 3.5513 0.5324 4.4321 18 6 2.4999 -0.3006 4.7600 19 6 2.5446 -1.1010 6.0362 20 6 1.3975 -0.4073 3.9084 21 6 0.3105 -1.2760 4.2469 22 7 -0.5517 -1.9651 4.5154 23 6 1.3583 0.3335 2.7283 24 1 -0.3634 0.3613 -0.9621 25 1 -0.3633 -1.0138 0.1681 26 1 -0.3634 0.6525 0.7939 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.3356 1.7748 -1.9437 30 1 1.9592 3.1892 -1.0614 31 1 5.1882 2.7602 -4.4530 32 1 4.3402 1.9252 3.0187 33 1 4.4032 0.6079 5.0916 34 1 3.0159 -2.0649 5.8441 35 1 3.1202 -0.5579 6.7857 36 1 1.5298 -1.2590 6.4015 37 1 0.5083 0.2554 2.0667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799575032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = 5.772267 kcal Electronic energy + Delta-G solvation = -20305.846255 eV Core-core repulsion = 17240.819837 eV Total energy + Delta-G solvation = -3065.026418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59259 -39.86021 -37.48545 -37.17508 -34.99973 -33.92121 -32.61389 -31.74406 -30.05376 -28.27263 -24.88854 -24.77440 -24.36485 -22.96146 -21.05434 -19.19104 -18.95746 -17.88839 -17.45274 -16.83981 -16.71144 -16.04706 -15.88254 -15.42618 -15.19331 -14.78515 -14.49202 -14.38371 -14.10743 -14.04760 -13.83620 -13.74559 -13.48725 -13.25556 -13.13763 -12.92965 -12.81577 -12.52212 -12.44291 -12.13862 -12.06261 -11.90890 -11.73545 -10.86949 -10.81834 -10.04598 -9.78757 -9.47890 -8.33250 -6.38490 -0.36784 -0.01110 1.34275 1.38026 1.46096 1.54731 1.60433 1.94666 2.25927 2.31890 2.71906 2.81638 3.01171 3.45373 3.66979 3.83850 4.00031 4.08444 4.25971 4.29806 4.48154 4.49922 4.64392 4.72386 4.80138 4.84829 4.85501 4.92563 4.94255 5.03353 5.18824 5.27364 5.33664 5.36224 5.45891 5.57859 5.69416 6.23156 6.38704 6.58989 6.63180 7.17539 7.31236 8.83410 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.004813 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.225278 B = 5816.691737 C = 6380.705921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.089 3.911 3 N -0.590 5.590 4 C 0.224 3.776 5 C -0.537 4.537 6 H 0.032 0.968 7 C 0.015 3.985 8 N -0.943 5.943 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.239 1.239 13 C 0.545 3.455 14 O -0.585 6.585 15 C -0.143 4.143 16 C -0.043 4.043 17 C -0.110 4.110 18 C -0.008 4.008 19 C -0.125 4.125 20 C -0.045 4.045 21 C 0.282 3.718 22 N -0.448 5.448 23 C -0.046 4.046 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.023 0.977 31 H 0.269 0.731 32 H 0.130 0.870 33 H 0.176 0.824 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 -7.818 17.172 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.033 4.033 3 N -0.320 5.320 4 C 0.102 3.898 5 C -0.576 4.576 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.583 5.583 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.162 1.162 13 C 0.334 3.666 14 O -0.467 6.467 15 C -0.146 4.146 16 C -0.063 4.063 17 C -0.128 4.128 18 C -0.010 4.010 19 C -0.181 4.181 20 C -0.049 4.049 21 C -0.032 4.032 22 N -0.124 5.124 23 C -0.066 4.066 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.193 0.807 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.242 -8.269 17.406 20.959 hybrid contribution 0.428 1.054 -1.258 1.696 sum -7.814 -7.215 16.149 19.336 Atomic orbital electron populations 1.22330 0.94099 1.03741 1.02651 1.21991 0.95550 0.81496 1.04236 1.47963 1.62318 1.14971 1.06707 1.19370 0.95897 0.92539 0.82031 1.21531 0.99525 1.30251 1.06279 0.94975 1.25795 0.97415 0.97432 0.97725 1.70040 1.22688 1.45588 1.19992 0.85766 0.80575 0.79178 0.77785 1.20078 1.20084 1.16171 1.18863 0.76716 0.86684 0.84367 1.90721 1.51011 1.18019 1.86929 1.19683 0.98343 1.00792 0.95799 1.21575 0.96028 0.96014 0.92676 1.21223 0.99537 0.95582 0.96429 1.20403 0.90902 0.94304 0.95435 1.21056 1.03633 1.00431 0.92948 1.15720 0.92227 0.99694 0.97258 1.25473 0.92436 0.92561 0.92769 1.81281 1.11038 1.11053 1.08999 1.21809 0.98090 0.91615 0.95124 0.92117 0.88595 0.91918 0.90627 0.88435 0.93051 0.95923 0.92236 0.85230 0.80652 0.88673 0.87794 0.91918 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.15 71.98 0.66 -3.24 16 2 C 0.09 2.66 5.60 86.38 0.48 3.14 16 3 N -0.59 -23.76 2.46 -829.55 -2.04 -25.80 16 4 C 0.22 10.74 4.29 85.63 0.37 11.11 16 5 C -0.54 -31.12 9.94 25.60 0.25 -30.86 16 6 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 7 C 0.01 0.85 5.47 84.66 0.46 1.32 16 8 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 9 Si 0.94 43.83 27.47 68.60 1.88 45.71 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 13 C 0.54 22.11 7.27 86.79 0.63 22.74 16 14 O -0.59 -29.09 16.54 -3.88 -0.06 -29.15 16 15 C -0.14 -4.19 5.07 -20.12 -0.10 -4.29 16 16 C -0.04 -1.06 9.68 22.58 0.22 -0.84 16 17 C -0.11 -1.72 9.67 22.19 0.21 -1.51 16 18 C -0.01 -0.12 5.92 -19.54 -0.12 -0.23 16 19 C -0.12 -1.17 9.60 71.24 0.68 -0.48 16 20 C -0.05 -0.86 5.73 -21.40 -0.12 -0.99 16 21 C 0.28 5.79 13.77 88.33 1.22 7.00 16 22 N -0.45 -10.83 18.54 19.00 0.35 -10.48 16 23 C -0.05 -1.05 7.12 22.80 0.16 -0.89 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.39 6.32 -2.39 -0.02 1.37 16 27 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 28 H 0.10 2.48 5.10 -2.39 -0.01 2.47 16 29 H 0.05 2.26 7.13 -2.39 -0.02 2.25 16 30 H 0.02 1.17 6.78 -2.39 -0.02 1.15 16 31 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.53 8.09 -2.39 -0.02 0.51 16 36 H 0.06 0.70 7.07 -2.38 -0.02 0.68 16 37 H 0.15 3.32 3.71 -2.91 -0.01 3.31 16 Total: -1.00 -76.17 317.22 6.48 -69.69 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.04 Total: 6.59 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.01 Total: 1.98 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -1.39 Total: -94.81 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.06 Total: -29.15 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -76.17 6.48 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799575032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.463 kcal (2) G-P(sol) polarization free energy of solvation -76.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds