Wall clock time and date at job start Mon Mar 30 2020 01:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31514 * 120.00360 * 187.26421 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48507 * 109.47037 * 270.00400 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48493 * 109.47092 * 150.00332 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21551 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.47869 * 119.99777 * 179.97438 * 14 13 3 17 17 C 1.39696 * 120.07047 * 0.02562 * 16 14 13 18 18 C 1.38055 * 120.16099 * 179.97438 * 17 16 14 19 19 C 1.38095 * 120.30348 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.93045 * 180.02562 * 19 18 17 21 21 C 1.39719 * 120.13405 * 359.97438 * 19 18 17 22 22 C 1.43206 * 120.07622 * 180.02562 * 21 19 18 23 23 N 8.85723 * 52.51210 * 37.03083 * 2 1 3 24 24 C 1.39293 * 120.06828 * 179.72167 * 16 14 13 25 25 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 26 26 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 27 27 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 29 29 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 30 30 H 0.96997 * 119.99401 * 354.93876 * 8 7 5 31 31 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 32 32 H 1.08004 * 119.92222 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.85738 * 180.02562 * 18 17 16 34 34 H 1.08993 * 109.47575 * 89.99991 * 20 19 18 35 35 H 1.09005 * 109.47064 * 210.00076 * 20 19 18 36 36 H 1.08996 * 109.47117 * 329.99411 * 20 19 18 37 37 H 1.08000 * 120.14912 * 0.02562 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3380 2.6316 0.4507 16 6 0.0614 3.3188 2.6483 17 6 0.9596 3.3542 3.7176 18 6 0.6042 3.9681 4.9020 19 6 -0.6403 4.5508 5.0387 20 6 -1.0192 5.2193 6.3351 21 6 -1.5484 4.5228 3.9773 22 6 -2.8384 5.1279 4.1202 23 7 -3.8605 5.6106 4.2326 24 6 -1.1933 3.9100 2.7767 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9924 1.1426 -0.6139 31 1 2.2853 2.1184 1.9978 32 1 1.9344 2.9000 3.6177 33 1 1.3026 3.9930 5.7254 34 1 -0.7322 6.2702 6.2995 35 1 -2.0964 5.1416 6.4827 36 1 -0.5032 4.7295 7.1608 37 1 -1.8897 3.8893 1.9514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799721236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:01 Heat of formation + Delta-G solvation = -14.715061 kcal Electronic energy + Delta-G solvation = -20038.732791 eV Core-core repulsion = 16972.817975 eV Total energy + Delta-G solvation = -3065.914815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41623 -39.98241 -37.56640 -37.06804 -34.59722 -34.12421 -33.01121 -32.27970 -29.40439 -28.28650 -24.94291 -24.32259 -23.72341 -22.20182 -21.43845 -20.44698 -19.22672 -17.64822 -17.52172 -16.68013 -16.38764 -16.21249 -15.65988 -15.39139 -15.14149 -14.76879 -14.50664 -14.40113 -14.26035 -14.11932 -14.03078 -13.88875 -13.67695 -13.21772 -12.83216 -12.72716 -12.65397 -12.47187 -12.27715 -12.24416 -11.69955 -11.48330 -10.98004 -10.83027 -10.63577 -10.09198 -9.95782 -9.70763 -8.75556 -6.44229 -0.43800 -0.04843 1.43277 1.49660 1.52836 1.58790 1.69721 2.16965 2.36161 2.41897 2.78232 2.85216 3.05752 3.60577 3.74051 3.89938 4.02079 4.25284 4.31719 4.39679 4.45266 4.55368 4.62360 4.76813 4.84674 4.87801 5.08535 5.09435 5.16186 5.20337 5.22146 5.31441 5.32096 5.55847 5.61259 5.66233 5.71565 6.03210 6.33531 6.54389 6.82554 7.29139 7.41428 8.64443 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030647 B = 0.004308 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.403316 B = 6497.801303 C = 7032.601778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.246 3.754 4 H 0.025 0.975 5 C -0.603 4.603 6 H 0.046 0.954 7 C -0.007 4.007 8 N -0.936 5.936 9 Si 1.076 2.924 10 H -0.258 1.258 11 H -0.266 1.266 12 H -0.289 1.289 13 N -0.694 5.694 14 C 0.544 3.456 15 O -0.579 6.579 16 C -0.150 4.150 17 C -0.045 4.045 18 C -0.113 4.113 19 C -0.003 4.003 20 C -0.126 4.126 21 C -0.052 4.052 22 C 0.281 3.719 23 N -0.455 5.455 24 C -0.016 4.016 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.259 0.741 31 H 0.404 0.596 32 H 0.151 0.849 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.990 4.939 16.315 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.141 3.859 4 H 0.043 0.957 5 C -0.641 4.641 6 H 0.064 0.936 7 C -0.207 4.207 8 N -0.571 5.571 9 Si 0.899 3.101 10 H -0.183 1.183 11 H -0.191 1.191 12 H -0.215 1.215 13 N -0.343 5.343 14 C 0.332 3.668 15 O -0.461 6.461 16 C -0.153 4.153 17 C -0.065 4.065 18 C -0.131 4.131 19 C -0.006 4.006 20 C -0.182 4.182 21 C -0.056 4.056 22 C -0.034 4.034 23 N -0.131 5.131 24 C -0.037 4.037 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.241 0.759 32 H 0.168 0.832 33 H 0.197 0.803 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.032 5.012 14.308 18.750 hybrid contribution 0.966 0.474 1.297 1.685 sum -10.066 5.486 15.605 19.364 Atomic orbital electron populations 1.21792 0.95474 1.00565 1.01541 1.22160 0.95450 0.98288 1.01437 1.18950 0.93651 0.89806 0.83509 0.95669 1.22355 0.91390 1.46501 1.03890 0.93579 1.26726 0.97644 0.93709 1.02645 1.70933 1.05367 1.44736 1.36100 0.83592 0.74447 0.78511 0.73502 1.18304 1.19131 1.21531 1.45976 1.15229 1.55736 1.17328 1.18653 0.81925 0.78411 0.87835 1.90731 1.51978 1.61305 1.42090 1.19757 0.96415 1.04474 0.94689 1.21856 0.98752 0.94241 0.91608 1.21305 0.95921 0.97462 0.98364 1.20436 0.92361 0.93283 0.94497 1.21069 1.02286 1.01765 0.93127 1.15772 0.88450 1.05211 0.96128 1.25650 0.92575 0.92581 0.92586 1.81260 1.12206 1.10797 1.08815 1.21145 0.95087 0.91610 0.95876 0.93075 0.94239 0.92274 0.93052 0.91775 0.93162 0.75922 0.83182 0.80252 0.88772 0.92249 0.87434 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 8.52 71.98 0.61 -4.47 16 2 C -0.13 -5.57 5.20 30.59 0.16 -5.42 16 3 C 0.25 11.12 1.81 44.24 0.08 11.20 16 4 H 0.03 1.29 6.07 -2.39 -0.01 1.27 16 5 C -0.60 -31.46 9.09 25.60 0.23 -31.23 16 6 H 0.05 2.50 7.95 -2.91 -0.02 2.48 16 7 C -0.01 -0.39 5.42 84.65 0.46 0.07 16 8 N -0.94 -55.42 13.70 21.45 0.29 -55.13 16 9 Si 1.08 49.95 25.39 68.60 1.74 51.69 16 10 H -0.26 -10.99 6.73 99.48 0.67 -10.32 16 11 H -0.27 -11.99 6.38 99.48 0.63 -11.36 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 N -0.69 -25.48 4.98 -448.95 -2.23 -27.72 16 14 C 0.54 19.08 6.36 86.79 0.55 19.63 16 15 O -0.58 -24.38 13.48 -3.88 -0.05 -24.43 16 16 C -0.15 -3.83 5.87 -20.12 -0.12 -3.95 16 17 C -0.05 -0.80 9.54 22.58 0.22 -0.58 16 18 C -0.11 -1.33 9.67 22.19 0.21 -1.11 16 19 C 0.00 -0.04 5.92 -19.54 -0.12 -0.16 16 20 C -0.13 -1.09 9.60 71.23 0.68 -0.41 16 21 C -0.05 -1.02 5.73 -21.40 -0.12 -1.14 16 22 C 0.28 6.35 13.77 88.33 1.22 7.56 16 23 N -0.45 -12.13 18.54 19.00 0.35 -11.78 16 24 C -0.02 -0.38 9.30 22.80 0.21 -0.16 16 25 H 0.05 1.88 5.64 -2.39 -0.01 1.87 16 26 H 0.04 1.56 7.87 -2.38 -0.02 1.54 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 2.21 4.43 -2.39 -0.01 2.20 16 29 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.26 15.28 8.72 -92.71 -0.81 14.47 16 31 H 0.40 12.56 6.55 -92.71 -0.61 11.95 16 32 H 0.15 2.24 6.39 -2.91 -0.02 2.22 16 33 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.67 7.08 -2.38 -0.02 0.65 16 36 H 0.11 0.40 8.08 -2.39 -0.02 0.38 16 37 H 0.13 3.49 7.64 -2.91 -0.02 3.47 16 Total: -1.00 -68.41 310.99 4.74 -63.67 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.36 Total: 13.87 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.28 Total: -10.17 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -1.59 Total: -94.62 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.74 Total: 51.69 kcal Total: -68.41 4.74 -63.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799721236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.952 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds