Wall clock time and date at job start Mon Mar 30 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31511 * 120.00035 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99998 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46865 * 89.99417 * 9 7 5 11 11 H 1.48498 * 109.47233 * 209.99802 * 9 7 5 12 12 H 1.48508 * 109.47028 * 329.99943 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 3 16 16 C 1.47869 * 119.99621 * 179.72373 * 14 13 3 17 17 C 1.39703 * 120.06914 * 359.97438 * 16 14 13 18 18 C 1.38058 * 120.15130 * 179.97438 * 17 16 14 19 19 C 1.38085 * 120.31023 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.93135 * 180.02562 * 19 18 17 21 21 C 1.39719 * 120.13721 * 359.97399 * 19 18 17 22 22 C 1.43200 * 120.07972 * 180.02562 * 21 19 18 23 23 N 8.86214 * 52.39764 * 323.53615 * 2 1 3 24 24 C 1.39292 * 120.06675 * 179.72435 * 16 14 13 25 25 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 27 27 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 28 28 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 29 29 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 30 30 H 0.97000 * 120.00229 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 32 32 H 1.07994 * 119.91996 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.84237 * 180.02562 * 18 17 16 34 34 H 1.08991 * 109.47570 * 89.99590 * 20 19 18 35 35 H 1.09002 * 109.46825 * 210.00259 * 20 19 18 36 36 H 1.08997 * 109.46903 * 329.99573 * 20 19 18 37 37 H 1.08001 * 120.15342 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4301 16 6 0.0483 3.3358 -2.6263 17 6 0.9396 3.3741 -3.7014 18 6 0.5780 3.9954 -4.8801 19 6 -0.6651 4.5834 -5.0051 20 6 -1.0511 5.2588 -6.2958 21 6 -1.5663 4.5525 -3.9378 22 6 -2.8553 5.1621 -4.0690 23 7 -3.8775 5.6466 -4.1728 24 6 -1.2094 3.9222 -2.7468 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8771 0.4817 2.1127 31 1 2.2719 2.1232 -1.9977 32 1 1.9132 2.9158 -3.6105 33 1 1.2708 4.0217 -5.7082 34 1 -1.5283 4.5349 -6.9562 35 1 -1.7452 6.0727 -6.0865 36 1 -0.1586 5.6575 -6.7782 37 1 -1.9038 3.8915 -1.9202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799721237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:04 Heat of formation + Delta-G solvation = 12.815069 kcal Electronic energy + Delta-G solvation = -20035.485763 eV Core-core repulsion = 16970.764744 eV Total energy + Delta-G solvation = -3064.721019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30231 -38.77012 -36.54948 -35.43155 -33.34375 -32.41982 -31.75882 -31.18817 -28.13252 -27.20535 -23.97571 -23.11897 -22.44371 -21.10186 -19.94861 -18.91544 -17.01190 -16.33193 -16.25010 -15.53436 -15.25948 -14.86544 -14.64335 -14.35673 -14.01985 -13.58599 -13.37954 -13.28664 -13.00871 -12.95362 -12.65302 -12.55902 -12.11750 -11.90681 -11.85480 -11.73943 -11.42823 -11.12374 -10.94904 -10.66730 -9.96978 -9.65509 -9.32578 -9.26795 -9.24123 -8.97758 -8.79896 -8.15638 -6.25381 -4.28512 0.43694 0.86428 2.45850 2.54725 3.20772 3.29522 3.33443 3.37767 3.56408 3.84482 3.89606 4.27976 4.41485 4.48714 4.81764 4.96435 5.08435 5.08892 5.22126 5.28419 5.34893 5.58849 5.72704 5.92229 5.96766 5.99076 6.07471 6.08479 6.14871 6.46818 6.61874 6.66367 6.78995 6.91266 7.18253 7.23403 7.27773 7.44650 8.06789 8.43073 8.69006 8.81135 9.35014 10.86502 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031622 B = 0.004280 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.254106 B = 6540.420909 C = 7084.254719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.692 5.692 14 C 0.544 3.456 15 O -0.542 6.542 16 C -0.128 4.128 17 C -0.052 4.052 18 C -0.127 4.127 19 C -0.021 4.021 20 C -0.125 4.125 21 C -0.045 4.045 22 C 0.262 3.738 23 N -0.421 5.421 24 C -0.011 4.011 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.268 0.732 31 H 0.394 0.606 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 4.447 -13.785 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.340 5.340 14 C 0.330 3.670 15 O -0.422 6.422 16 C -0.132 4.132 17 C -0.072 4.072 18 C -0.145 4.145 19 C -0.024 4.024 20 C -0.182 4.182 21 C -0.049 4.049 22 C -0.053 4.053 23 N -0.096 5.096 24 C -0.033 4.033 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.322 5.105 -13.133 17.467 hybrid contribution 0.402 -0.735 0.485 0.968 sum -9.920 4.369 -12.649 16.658 Atomic orbital electron populations 1.21886 0.96912 0.99157 1.02280 1.22288 0.94387 0.99822 1.01236 1.19208 0.95759 0.88576 0.82572 0.93064 1.21025 0.88481 1.40040 1.07975 0.90133 1.24820 0.94859 0.95075 0.97648 1.69858 1.08693 1.44359 1.29828 0.86915 0.80996 0.79991 0.80928 1.20193 1.22136 1.18404 1.46121 1.14575 1.55120 1.18148 1.18072 0.82935 0.79291 0.86731 1.90761 1.51460 1.60207 1.39782 1.20143 0.95061 1.02346 0.95623 1.21686 0.99048 0.94627 0.91804 1.20923 0.95849 0.99383 0.98387 1.20068 0.92940 0.95055 0.94341 1.20955 1.02808 1.00389 0.94009 1.15779 0.88437 1.04615 0.96055 1.25547 0.92719 0.93456 0.93561 1.81243 1.11186 1.09453 1.07755 1.21285 0.95427 0.91014 0.95553 0.94888 0.92813 0.92929 0.92195 0.92676 0.92223 0.77098 0.84292 0.84281 0.90092 0.91431 0.90205 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.52 37.16 0.32 -2.48 16 2 C -0.14 -2.94 5.11 -26.73 -0.14 -3.07 16 3 C 0.24 5.43 1.83 -69.08 -0.13 5.31 16 4 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -13.84 9.31 -34.44 -0.32 -14.16 16 6 H 0.08 2.17 7.98 -52.49 -0.42 1.75 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 9 Si 0.88 21.11 24.41 -169.99 -4.15 16.96 16 10 H -0.28 -6.38 6.83 56.52 0.39 -6.00 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.69 -12.58 4.97 -55.87 -0.28 -12.86 16 14 C 0.54 9.44 6.35 -12.32 -0.08 9.36 16 15 O -0.54 -11.13 13.49 5.32 0.07 -11.06 16 16 C -0.13 -1.68 5.87 -105.02 -0.62 -2.30 16 17 C -0.05 -0.52 9.54 -39.10 -0.37 -0.90 16 18 C -0.13 -1.02 9.66 -39.70 -0.38 -1.40 16 19 C -0.02 -0.18 5.92 -104.12 -0.62 -0.80 16 20 C -0.13 -0.80 9.60 36.01 0.35 -0.46 16 21 C -0.05 -0.48 5.73 -106.99 -0.61 -1.09 16 22 C 0.26 3.09 13.77 -22.48 -0.31 2.78 16 23 N -0.42 -5.73 18.54 41.83 0.78 -4.95 16 24 C -0.01 -0.14 9.30 -38.76 -0.36 -0.50 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.10 7.85 -51.93 -0.41 0.69 16 27 H 0.05 0.98 5.66 -51.93 -0.29 0.69 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.24 3.21 -51.93 -0.17 1.07 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.39 6.11 6.56 -40.82 -0.27 5.85 16 32 H 0.14 1.21 6.39 -52.49 -0.34 0.87 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.49 7.08 -51.93 -0.37 0.12 16 36 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 37 H 0.15 1.86 7.64 -52.49 -0.40 1.46 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -30.81 309.66 -5.81 -36.62 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.30 Total: 3.12 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.37 Total: -7.64 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 1.27 Total: -42.66 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.15 Total: 16.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.81 -5.81 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799721237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.435 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds