Wall clock time and date at job start Mon Mar 30 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47221 * 346.67731 * 3 2 1 5 5 C 1.46497 * 119.99795 * 90.00452 * 4 3 2 6 6 C 1.50707 * 109.47012 * 269.99690 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 C 1.34777 * 120.00250 * 269.99986 * 4 3 2 13 13 O 1.21585 * 119.99922 * 180.02562 * 12 4 3 14 14 N 1.34773 * 119.99972 * 0.02562 * 12 4 3 15 15 C 1.46496 * 120.00262 * 179.97438 * 14 12 4 16 16 C 1.50705 * 109.47487 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00012 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46908 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47566 * 119.99523 * 20 18 16 23 23 H 1.48498 * 109.46630 * 240.00006 * 20 18 16 24 24 H 4.40637 * 5.51316 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47175 * 226.67895 * 3 2 1 26 26 H 1.08999 * 109.47396 * 106.67873 * 3 2 1 27 27 H 1.09005 * 109.47643 * 150.00151 * 5 4 3 28 28 H 1.09000 * 109.47513 * 29.99314 * 5 4 3 29 29 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 30 30 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 32 32 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 33 33 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 34 34 H 0.97010 * 119.99909 * 359.97438 * 14 12 4 35 35 H 1.08999 * 109.47334 * 299.99808 * 15 14 12 36 36 H 1.08997 * 109.47318 * 59.99723 * 15 14 12 37 37 H 0.97006 * 119.99811 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3432 0.3183 5 6 3.3797 -2.3073 -0.7572 6 6 2.1242 -3.0995 -1.0169 7 6 1.2024 -2.6497 -1.9437 8 6 0.0511 -3.3767 -2.1822 9 6 -0.1782 -4.5536 -1.4945 10 6 0.7409 -5.0007 -0.5638 11 6 1.8945 -4.2761 -0.3286 12 6 3.3598 -1.6924 1.6005 13 8 3.7660 -2.8075 1.8645 14 7 3.1343 -0.8055 2.5899 15 6 3.3781 -1.1852 3.9836 16 6 3.0513 -0.0230 4.8856 17 1 2.6977 0.9058 4.4628 18 6 3.2046 -0.1450 6.2503 19 7 3.6356 -1.2759 6.7650 20 14 2.7988 1.2954 7.3683 21 1 2.3364 2.4437 6.5480 22 1 1.7261 0.8998 8.3159 23 1 4.0118 1.6880 8.1296 24 1 -1.0497 -0.0004 -0.0001 25 1 3.0090 0.7059 0.7477 26 1 3.0093 0.2958 -0.9844 27 1 4.1819 -2.9842 -0.4630 28 1 3.6674 -1.7752 -1.6639 29 1 1.3818 -1.7304 -2.4814 30 1 -0.6693 -3.0250 -2.9060 31 1 -1.0776 -5.1217 -1.6812 32 1 0.5597 -5.9179 -0.0233 33 1 2.6150 -4.6279 0.3949 34 1 2.8105 0.0843 2.3791 35 1 2.7483 -2.0359 4.2440 36 1 4.4261 -1.4577 4.1080 37 1 3.7431 -1.3618 7.7252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807183680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:11 Heat of formation + Delta-G solvation = 56.458288 kcal Electronic energy + Delta-G solvation = -20240.580176 eV Core-core repulsion = 17177.751668 eV Total energy + Delta-G solvation = -3062.828507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92046 -38.68761 -35.74719 -34.31740 -32.89853 -32.29277 -31.18822 -30.74670 -27.47433 -27.21848 -25.27291 -22.54070 -22.43260 -21.19950 -19.58700 -18.48682 -17.72129 -16.82662 -16.02009 -15.89260 -15.46006 -14.86082 -14.73418 -14.59816 -13.73764 -13.66903 -13.32870 -13.24866 -13.04547 -13.02605 -12.42724 -11.98974 -11.83728 -11.74588 -11.15489 -10.93277 -10.89013 -10.83805 -10.44381 -10.28756 -10.09406 -9.40048 -9.33118 -8.77906 -8.73818 -8.69494 -8.53355 -7.74749 -6.13702 -4.19899 1.39312 1.54111 2.65971 2.95299 3.25167 3.32013 3.35130 3.51887 3.86817 4.00915 4.33686 4.48745 4.72479 4.93304 4.97022 5.08220 5.19586 5.21537 5.22682 5.36762 5.51594 5.58863 5.76231 5.83588 6.02328 6.10021 6.18585 6.54202 6.63716 6.64385 6.80271 7.10106 7.12911 7.52593 7.53755 7.59336 7.73586 7.85265 8.03391 8.76982 8.90499 9.31915 9.48894 10.96614 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.004492 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.187447 B = 6231.824651 C = 6511.026721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.205 4.205 3 C 0.221 3.779 4 N -0.628 5.628 5 C 0.173 3.827 6 C -0.102 4.102 7 C -0.101 4.101 8 C -0.130 4.130 9 C -0.121 4.121 10 C -0.126 4.126 11 C -0.090 4.090 12 C 0.698 3.302 13 O -0.592 6.592 14 N -0.726 5.726 15 C 0.267 3.733 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.212 0.788 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 0.077 -18.823 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C 0.098 3.902 4 N -0.366 5.366 5 C 0.050 3.950 6 C -0.104 4.104 7 C -0.119 4.119 8 C -0.148 4.148 9 C -0.140 4.140 10 C -0.144 4.144 11 C -0.108 4.108 12 C 0.400 3.600 13 O -0.471 6.471 14 N -0.379 5.379 15 C 0.145 3.855 16 C -0.578 4.578 17 H 0.080 0.920 18 C -0.139 4.139 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.229 0.771 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.220 0.780 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.932 -0.837 -18.363 19.032 hybrid contribution -0.855 1.169 0.659 1.591 sum -5.787 0.332 -17.704 18.628 Atomic orbital electron populations 1.24810 0.95834 0.99043 1.00651 1.23633 0.95041 1.01255 1.00703 1.18318 0.83751 0.85384 1.02790 1.47244 1.70858 1.12926 1.05541 1.20185 0.94508 0.91042 0.89303 1.20324 0.97685 0.95666 0.96686 1.20946 0.94072 0.98940 0.97962 1.21019 0.97565 0.95693 1.00489 1.21103 0.99113 0.96761 0.97000 1.21173 0.94631 1.00245 0.98353 1.21299 0.97429 0.94272 0.97808 1.16071 0.78945 0.84996 0.80010 1.90846 1.53560 1.20654 1.82007 1.45863 1.69221 1.14939 1.07892 1.18985 0.96956 0.96148 0.73364 1.21250 1.46232 0.98747 0.91609 0.92011 1.24928 0.94843 0.96209 0.97967 1.69990 1.45069 1.24726 1.12508 0.86376 0.78092 0.82042 0.80490 1.19665 1.20827 1.20793 0.77109 0.88280 0.88327 0.88752 0.90162 0.86714 0.86613 0.86601 0.86324 0.85174 0.78038 0.95810 0.95662 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 19.25 29.55 0.57 -1.82 16 2 C -0.20 -2.78 13.06 -37.12 -0.48 -3.26 16 3 C 0.22 2.74 5.69 -6.83 -0.04 2.70 16 4 N -0.63 -9.82 2.42 -184.16 -0.44 -10.26 16 5 C 0.17 2.32 5.58 -5.19 -0.03 2.29 16 6 C -0.10 -1.42 5.45 -104.62 -0.57 -1.99 16 7 C -0.10 -1.22 9.10 -39.58 -0.36 -1.58 16 8 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 9 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 10 C -0.13 -1.70 10.05 -39.58 -0.40 -2.09 16 11 C -0.09 -1.37 9.70 -39.58 -0.38 -1.75 16 12 C 0.70 14.64 8.27 -86.92 -0.72 13.92 16 13 O -0.59 -14.47 15.45 5.29 0.08 -14.39 16 14 N -0.73 -16.03 5.41 -66.42 -0.36 -16.39 16 15 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 16 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.21 2.10 7.80 -54.11 -0.42 1.68 16 25 H 0.10 1.20 6.36 -51.93 -0.33 0.87 16 26 H 0.10 0.87 7.89 -51.93 -0.41 0.46 16 27 H 0.09 1.38 7.36 -51.93 -0.38 1.00 16 28 H 0.08 0.79 7.84 -51.93 -0.41 0.39 16 29 H 0.11 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.13 2.21 7.58 -52.49 -0.40 1.81 16 34 H 0.39 7.53 6.05 -40.82 -0.25 7.29 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -33.49 329.13 -8.37 -41.86 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.67 Total: 7.39 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.65 Total: -3.61 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.07 Total: -52.25 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.49 -8.37 -41.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807183680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.321 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds