Wall clock time and date at job start Mon Mar 30 2020 01:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47221 * 346.67731 * 3 2 1 5 5 C 1.46497 * 119.99795 * 90.00452 * 4 3 2 6 6 C 1.50707 * 109.47012 * 269.99690 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 C 1.34777 * 120.00250 * 269.99986 * 4 3 2 13 13 O 1.21585 * 119.99922 * 180.02562 * 12 4 3 14 14 N 1.34773 * 119.99972 * 0.02562 * 12 4 3 15 15 C 1.46496 * 120.00262 * 179.97438 * 14 12 4 16 16 C 1.50705 * 109.47487 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00012 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46908 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47566 * 119.99523 * 20 18 16 23 23 H 1.48498 * 109.46630 * 240.00006 * 20 18 16 24 24 H 4.40637 * 5.51316 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47175 * 226.67895 * 3 2 1 26 26 H 1.08999 * 109.47396 * 106.67873 * 3 2 1 27 27 H 1.09005 * 109.47643 * 150.00151 * 5 4 3 28 28 H 1.09000 * 109.47513 * 29.99314 * 5 4 3 29 29 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 30 30 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 32 32 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 33 33 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 34 34 H 0.97010 * 119.99909 * 359.97438 * 14 12 4 35 35 H 1.08999 * 109.47334 * 299.99808 * 15 14 12 36 36 H 1.08997 * 109.47318 * 59.99723 * 15 14 12 37 37 H 0.97006 * 119.99811 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3432 0.3183 5 6 3.3797 -2.3073 -0.7572 6 6 2.1242 -3.0995 -1.0169 7 6 1.2024 -2.6497 -1.9437 8 6 0.0511 -3.3767 -2.1822 9 6 -0.1782 -4.5536 -1.4945 10 6 0.7409 -5.0007 -0.5638 11 6 1.8945 -4.2761 -0.3286 12 6 3.3598 -1.6924 1.6005 13 8 3.7660 -2.8075 1.8645 14 7 3.1343 -0.8055 2.5899 15 6 3.3781 -1.1852 3.9836 16 6 3.0513 -0.0230 4.8856 17 1 2.6977 0.9058 4.4628 18 6 3.2046 -0.1450 6.2503 19 7 3.6356 -1.2759 6.7650 20 14 2.7988 1.2954 7.3683 21 1 2.3364 2.4437 6.5480 22 1 1.7261 0.8998 8.3159 23 1 4.0118 1.6880 8.1296 24 1 -1.0497 -0.0004 -0.0001 25 1 3.0090 0.7059 0.7477 26 1 3.0093 0.2958 -0.9844 27 1 4.1819 -2.9842 -0.4630 28 1 3.6674 -1.7752 -1.6639 29 1 1.3818 -1.7304 -2.4814 30 1 -0.6693 -3.0250 -2.9060 31 1 -1.0776 -5.1217 -1.6812 32 1 0.5597 -5.9179 -0.0233 33 1 2.6150 -4.6279 0.3949 34 1 2.8105 0.0843 2.3791 35 1 2.7483 -2.0359 4.2440 36 1 4.4261 -1.4577 4.1080 37 1 3.7431 -1.3618 7.7252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807183680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:10 Heat of formation + Delta-G solvation = 35.906977 kcal Electronic energy + Delta-G solvation = -20241.471347 eV Core-core repulsion = 17177.751668 eV Total energy + Delta-G solvation = -3063.719679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34319 -39.85689 -37.11974 -36.22982 -34.45462 -33.81069 -32.36753 -31.73313 -29.36457 -28.33714 -26.68098 -24.47383 -23.42887 -22.38630 -21.14085 -19.93353 -18.94013 -18.02270 -17.90191 -17.30450 -16.65537 -16.52694 -15.94448 -15.86178 -15.24994 -15.06041 -14.87951 -14.35347 -14.23230 -14.15047 -13.93898 -13.76790 -13.44496 -12.96606 -12.80359 -12.75540 -12.22239 -12.15112 -11.84515 -11.56160 -11.44502 -11.19981 -10.95382 -10.81600 -10.13790 -9.77929 -9.69990 -9.51943 -8.28997 -6.45536 0.37948 0.53612 1.42202 1.44236 1.50909 1.58141 1.96919 2.21135 2.25208 2.41245 2.93960 3.06029 3.29293 3.56373 3.91543 3.96452 4.17850 4.24464 4.30541 4.32887 4.55712 4.61330 4.75954 4.77926 5.03468 5.11031 5.13429 5.18181 5.26292 5.44042 5.52851 5.58317 5.63578 5.68953 5.74375 5.84762 6.07060 6.15364 6.65827 6.76153 7.15753 7.24782 7.68765 8.83643 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.004492 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.187447 B = 6231.824651 C = 6511.026721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.230 4.230 3 C 0.214 3.786 4 N -0.615 5.615 5 C 0.169 3.831 6 C -0.114 4.114 7 C -0.096 4.096 8 C -0.126 4.126 9 C -0.122 4.122 10 C -0.141 4.141 11 C -0.122 4.122 12 C 0.694 3.306 13 O -0.637 6.637 14 N -0.723 5.723 15 C 0.288 3.712 16 C -0.553 4.553 17 H 0.080 0.920 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.985 3.015 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.277 1.277 24 H 0.235 0.765 25 H 0.101 0.899 26 H 0.146 0.854 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.400 0.600 35 H -0.020 1.020 36 H -0.012 1.012 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 2.825 -20.943 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.232 4.232 3 C 0.092 3.908 4 N -0.350 5.350 5 C 0.047 3.953 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.144 4.144 9 C -0.140 4.140 10 C -0.159 4.159 11 C -0.141 4.141 12 C 0.395 3.605 13 O -0.519 6.519 14 N -0.377 5.377 15 C 0.164 3.836 16 C -0.591 4.591 17 H 0.098 0.902 18 C -0.194 4.194 19 N -0.569 5.569 20 Si 0.808 3.192 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.202 1.202 24 H 0.251 0.749 25 H 0.118 0.882 26 H 0.163 0.837 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.237 0.763 35 H -0.002 1.002 36 H 0.006 0.994 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.847 1.948 -20.566 21.763 hybrid contribution -0.307 0.238 1.214 1.275 sum -7.154 2.186 -19.352 20.747 Atomic orbital electron populations 1.25520 0.96741 0.97906 0.99995 1.23899 0.95622 1.02212 1.01452 1.18704 0.83600 0.83102 1.05346 1.47192 1.69491 1.14721 1.03612 1.20428 0.93990 0.90955 0.89936 1.20371 0.98437 0.95265 0.97460 1.21215 0.93517 0.99710 0.97030 1.21454 0.97719 0.94941 1.00257 1.21443 0.99342 0.97241 0.95943 1.21342 0.94644 1.00600 0.99361 1.21236 0.98040 0.96175 0.98674 1.16291 0.78529 0.84042 0.81618 1.90818 1.55284 1.22516 1.83251 1.45462 1.69968 1.15935 1.06382 1.18379 0.93656 0.95117 0.76422 1.21589 1.46314 0.99135 0.92088 0.90157 1.26045 0.94193 0.99353 0.99817 1.70151 1.46118 1.27461 1.13171 0.85106 0.77881 0.78251 0.77940 1.17692 1.20484 1.20208 0.74872 0.88164 0.83666 0.91125 0.85402 0.84043 0.83312 0.83932 0.85904 0.88725 0.76316 1.00214 0.99426 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 19.25 74.32 1.43 -2.75 16 2 C -0.23 -5.62 13.06 31.12 0.41 -5.21 16 3 C 0.21 4.74 5.69 84.57 0.48 5.22 16 4 N -0.61 -18.82 2.42 -854.82 -2.06 -20.88 16 5 C 0.17 4.42 5.58 85.64 0.48 4.90 16 6 C -0.11 -3.11 5.45 -19.86 -0.11 -3.22 16 7 C -0.10 -2.03 9.10 22.27 0.20 -1.83 16 8 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 9 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 10 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 11 C -0.12 -3.95 9.70 22.27 0.22 -3.74 16 12 C 0.69 30.20 8.27 179.06 1.48 31.68 16 13 O -0.64 -33.46 15.45 -3.98 -0.06 -33.52 16 14 N -0.72 -32.90 5.41 -482.31 -2.61 -35.51 16 15 C 0.29 16.48 5.43 85.64 0.46 16.94 16 16 C -0.55 -30.96 9.28 25.60 0.24 -30.72 16 17 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -57.06 13.29 21.44 0.28 -56.78 16 20 Si 0.99 42.94 29.54 68.60 2.03 44.96 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 24 H 0.23 3.85 7.80 -4.43 -0.03 3.81 16 25 H 0.10 2.21 6.36 -2.39 -0.02 2.19 16 26 H 0.15 1.88 7.89 -2.39 -0.02 1.86 16 27 H 0.07 2.18 7.36 -2.38 -0.02 2.16 16 28 H 0.13 2.10 7.84 -2.39 -0.02 2.08 16 29 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.12 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.09 3.64 7.58 -2.91 -0.02 3.61 16 34 H 0.40 15.58 6.05 -92.70 -0.56 15.01 16 35 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 36 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -77.66 329.13 4.50 -73.15 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.51 Total: 24.79 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.42 Total: 3.79 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -4.39 Total: -113.17 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.06 Total: -33.52 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -77.66 4.50 -73.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807183680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.060 kcal (2) G-P(sol) polarization free energy of solvation -77.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds