Wall clock time and date at job start Mon Mar 30 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31757 * 1 3 3 O 1.35642 * 120.00278 * 2 1 4 4 C 1.35965 * 118.00369 * 185.04978 * 3 2 1 5 5 C 1.38736 * 119.98506 * 354.55048 * 4 3 2 6 6 C 1.38092 * 120.01870 * 180.02562 * 5 4 3 7 7 C 1.38869 * 119.98449 * 359.97438 * 6 5 4 8 8 N 1.39914 * 120.01410 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99768 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47119 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47329 * 305.00335 * 10 9 8 12 12 C 1.47202 * 109.46860 * 65.00060 * 10 9 8 13 13 N 9.36365 * 161.82947 * 281.66151 * 2 1 3 14 14 C 1.52999 * 109.47130 * 184.99772 * 10 9 8 15 15 C 1.50696 * 109.47115 * 175.00151 * 14 10 9 16 16 H 1.08001 * 120.00052 * 359.97438 * 15 14 10 17 17 C 1.37881 * 120.00124 * 179.72763 * 15 14 10 18 18 N 1.31514 * 119.99650 * 0.27870 * 17 15 14 19 19 Si 1.86796 * 120.00211 * 180.27529 * 17 15 14 20 20 H 1.48507 * 109.46998 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47058 * 119.99842 * 19 17 15 22 22 H 1.48498 * 109.47216 * 240.00006 * 19 17 15 23 23 C 1.38868 * 119.96670 * 0.27466 * 7 6 5 24 24 C 1.38098 * 119.98346 * 359.47135 * 23 7 6 25 25 H 1.08006 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00110 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99862 * 180.02562 * 2 1 3 28 28 H 1.08002 * 119.99078 * 0.02562 * 5 4 3 29 29 H 1.08002 * 120.00449 * 179.97438 * 6 5 4 30 30 H 0.97000 * 120.00344 * 0.02562 * 8 7 6 31 31 H 1.09005 * 109.47345 * 60.00075 * 9 8 7 32 32 H 1.09002 * 109.47048 * 300.00089 * 9 8 7 33 33 H 1.09005 * 109.46957 * 55.00272 * 14 10 9 34 34 H 1.08998 * 109.47660 * 295.00410 * 14 10 9 35 35 H 0.97006 * 119.99723 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.00803 * 179.72633 * 23 7 6 37 37 H 1.08000 * 119.99090 * 180.22728 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3176 0.0000 0.0000 3 8 1.9958 1.1747 0.0000 4 6 3.3506 1.1296 -0.1057 5 6 4.0066 -0.0929 -0.0953 6 6 5.3826 -0.1395 -0.2021 7 6 6.1098 1.0377 -0.3203 8 7 7.5039 0.9912 -0.4291 9 6 8.2707 2.2332 -0.5544 10 6 9.7615 1.9043 -0.6556 11 1 10.0578 1.2948 0.1981 12 6 10.0166 1.1618 -1.9007 13 7 10.2143 0.5902 -2.8597 14 6 10.5710 3.2025 -0.6610 15 6 12.0422 2.8772 -0.6368 16 1 12.3674 1.8475 -0.6189 17 6 12.9733 3.8942 -0.6426 18 7 12.5774 5.1481 -0.6638 19 14 14.7971 3.4908 -0.6204 20 1 14.9779 2.0170 -0.5986 21 1 15.4426 4.0503 -1.8351 22 1 15.4206 4.0845 0.5896 23 6 5.4530 2.2612 -0.3254 24 6 4.0765 2.3060 -0.2239 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8575 -0.9353 -0.0004 28 1 3.4409 -1.0083 -0.0037 29 1 5.8931 -1.0912 -0.1936 30 1 7.9627 0.1366 -0.4222 31 1 8.0955 2.8583 0.3213 32 1 7.9542 2.7667 -1.4507 33 1 10.3151 3.7939 0.2182 34 1 10.3395 3.7715 -1.5614 35 1 13.2324 5.8636 -0.6675 36 1 6.0182 3.1773 -0.4129 37 1 3.5652 3.2573 -0.2315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842159252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:19 Heat of formation + Delta-G solvation = 36.906766 kcal Electronic energy + Delta-G solvation = -18994.961314 eV Core-core repulsion = 15931.284989 eV Total energy + Delta-G solvation = -3063.676325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59916 -38.72356 -37.05103 -34.96631 -33.64202 -32.32327 -31.52868 -31.01756 -28.49049 -26.37400 -24.29109 -22.88583 -22.40585 -21.81921 -20.28205 -18.90366 -17.47079 -16.77262 -16.62467 -16.11172 -15.46449 -14.99058 -14.83551 -14.54767 -14.06020 -13.74584 -13.69310 -13.33800 -13.21461 -13.01622 -12.58140 -12.35661 -12.19859 -11.93854 -11.89565 -11.44290 -11.18501 -10.89952 -10.74875 -10.62982 -10.45515 -10.11917 -9.73609 -9.34416 -9.10238 -8.98999 -8.54421 -7.12328 -6.18384 -4.22314 1.26392 1.39701 2.18161 3.04381 3.22864 3.31519 3.34469 3.41518 3.47157 3.58353 3.80239 4.33659 4.40671 4.61533 4.73398 4.87285 5.19265 5.20265 5.22028 5.27163 5.48920 5.54026 5.64389 5.70493 5.87969 5.93474 6.05912 6.13212 6.21134 6.28002 6.32641 6.33979 6.62387 7.28542 7.31480 7.38964 7.56182 7.75554 7.75962 8.11453 8.26722 8.81937 9.43898 10.92390 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046459 B = 0.002834 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.536954 B = 9877.520842 C =10253.250343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.025 3.975 3 O -0.256 6.256 4 C 0.042 3.958 5 C -0.149 4.149 6 C -0.164 4.164 7 C 0.202 3.798 8 N -0.747 5.747 9 C 0.130 3.870 10 C -0.002 4.002 11 H 0.108 0.892 12 C 0.238 3.762 13 N -0.466 5.466 14 C 0.033 3.967 15 C -0.529 4.529 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.162 4.162 24 C -0.087 4.087 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.399 0.601 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.946 -7.949 4.150 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.036 4.036 3 O -0.167 6.167 4 C -0.002 4.002 5 C -0.168 4.168 6 C -0.186 4.186 7 C 0.098 3.902 8 N -0.376 5.376 9 C 0.005 3.995 10 C -0.024 4.024 11 H 0.126 0.874 12 C -0.079 4.079 13 N -0.143 5.143 14 C -0.005 4.005 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.184 4.184 24 C -0.106 4.106 25 H 0.123 0.877 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.233 0.767 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.153 0.847 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.564 -8.243 2.694 20.490 hybrid contribution 1.308 -0.450 0.343 1.425 sum -17.256 -8.693 3.037 19.559 Atomic orbital electron populations 1.23471 0.93367 1.03190 1.09113 1.22548 0.93357 0.88192 0.99522 1.84322 1.17460 1.30725 1.84152 1.18717 0.80855 0.94515 1.06127 1.20885 0.94818 0.96649 1.04443 1.20370 0.93149 0.96971 1.08153 1.17835 0.84080 0.93609 0.94667 1.44914 1.02603 1.08885 1.81195 1.21557 0.89308 0.86379 1.02269 1.19474 0.94396 0.99742 0.88835 0.87424 1.29018 0.91914 0.92423 0.94580 1.80954 1.09756 1.11547 1.12005 1.19164 0.93904 0.88245 0.99216 1.21133 0.90640 0.92994 1.51989 0.92440 1.24954 0.99250 0.94976 0.94764 1.69941 1.34281 0.98708 1.49814 0.86518 0.85080 0.78634 0.77740 1.19714 1.20920 1.20759 1.20564 0.93341 0.96936 1.07586 1.20184 0.92851 0.96333 1.01265 0.87740 0.85873 0.85640 0.85544 0.85841 0.76659 0.90073 0.91573 0.93942 0.95293 0.92714 0.84686 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -2.04 14.63 28.85 0.42 -1.61 16 2 C 0.02 0.23 10.00 28.85 0.29 0.52 16 3 O -0.26 -3.04 10.01 -3.02 -0.03 -3.07 16 4 C 0.04 0.50 6.66 -39.21 -0.26 0.24 16 5 C -0.15 -1.60 9.19 -39.45 -0.36 -1.96 16 6 C -0.16 -1.83 9.89 -39.40 -0.39 -2.22 16 7 C 0.20 2.47 6.66 -83.70 -0.56 1.91 16 8 N -0.75 -9.15 5.53 -58.58 -0.32 -9.48 16 9 C 0.13 1.74 4.28 -4.04 -0.02 1.72 16 10 C 0.00 -0.04 2.26 -93.41 -0.21 -0.25 16 11 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.24 4.53 13.44 -20.83 -0.28 4.25 16 13 N -0.47 -9.80 18.52 42.07 0.78 -9.02 16 14 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 15 C -0.53 -13.51 8.60 -34.44 -0.30 -13.80 16 16 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 19 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.16 -1.92 9.31 -39.40 -0.37 -2.29 16 24 C -0.09 -1.02 9.98 -39.45 -0.39 -1.41 16 25 H 0.10 0.86 8.06 -52.48 -0.42 0.44 16 26 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 27 H 0.13 0.91 5.57 -52.49 -0.29 0.62 16 28 H 0.13 1.05 5.71 -52.49 -0.30 0.75 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.40 4.61 8.23 -40.82 -0.34 4.27 16 31 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 32 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 36 H 0.14 1.48 6.73 -52.49 -0.35 1.12 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -29.73 327.68 -6.17 -35.90 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.60 Total: 1.70 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.65 Total: -12.72 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 1.19 Total: -42.49 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -0.03 Total: -3.07 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.73 -6.17 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842159252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.802 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds