Wall clock time and date at job start Mon Mar 30 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31757 * 1 3 3 O 1.35642 * 120.00278 * 2 1 4 4 C 1.35965 * 118.00369 * 185.04978 * 3 2 1 5 5 C 1.38736 * 119.98506 * 354.55048 * 4 3 2 6 6 C 1.38092 * 120.01870 * 180.02562 * 5 4 3 7 7 C 1.38869 * 119.98449 * 359.97438 * 6 5 4 8 8 N 1.39914 * 120.01410 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99768 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47119 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47329 * 305.00335 * 10 9 8 12 12 C 1.47202 * 109.46860 * 65.00060 * 10 9 8 13 13 N 9.36365 * 161.82947 * 281.66151 * 2 1 3 14 14 C 1.52999 * 109.47130 * 184.99772 * 10 9 8 15 15 C 1.50696 * 109.47115 * 175.00151 * 14 10 9 16 16 H 1.08001 * 120.00052 * 359.97438 * 15 14 10 17 17 C 1.37881 * 120.00124 * 179.72763 * 15 14 10 18 18 N 1.31514 * 119.99650 * 0.27870 * 17 15 14 19 19 Si 1.86796 * 120.00211 * 180.27529 * 17 15 14 20 20 H 1.48507 * 109.46998 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47058 * 119.99842 * 19 17 15 22 22 H 1.48498 * 109.47216 * 240.00006 * 19 17 15 23 23 C 1.38868 * 119.96670 * 0.27466 * 7 6 5 24 24 C 1.38098 * 119.98346 * 359.47135 * 23 7 6 25 25 H 1.08006 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00110 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99862 * 180.02562 * 2 1 3 28 28 H 1.08002 * 119.99078 * 0.02562 * 5 4 3 29 29 H 1.08002 * 120.00449 * 179.97438 * 6 5 4 30 30 H 0.97000 * 120.00344 * 0.02562 * 8 7 6 31 31 H 1.09005 * 109.47345 * 60.00075 * 9 8 7 32 32 H 1.09002 * 109.47048 * 300.00089 * 9 8 7 33 33 H 1.09005 * 109.46957 * 55.00272 * 14 10 9 34 34 H 1.08998 * 109.47660 * 295.00410 * 14 10 9 35 35 H 0.97006 * 119.99723 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.00803 * 179.72633 * 23 7 6 37 37 H 1.08000 * 119.99090 * 180.22728 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3176 0.0000 0.0000 3 8 1.9958 1.1747 0.0000 4 6 3.3506 1.1296 -0.1057 5 6 4.0066 -0.0929 -0.0953 6 6 5.3826 -0.1395 -0.2021 7 6 6.1098 1.0377 -0.3203 8 7 7.5039 0.9912 -0.4291 9 6 8.2707 2.2332 -0.5544 10 6 9.7615 1.9043 -0.6556 11 1 10.0578 1.2948 0.1981 12 6 10.0166 1.1618 -1.9007 13 7 10.2143 0.5902 -2.8597 14 6 10.5710 3.2025 -0.6610 15 6 12.0422 2.8772 -0.6368 16 1 12.3674 1.8475 -0.6189 17 6 12.9733 3.8942 -0.6426 18 7 12.5774 5.1481 -0.6638 19 14 14.7971 3.4908 -0.6204 20 1 14.9779 2.0170 -0.5986 21 1 15.4426 4.0503 -1.8351 22 1 15.4206 4.0845 0.5896 23 6 5.4530 2.2612 -0.3254 24 6 4.0765 2.3060 -0.2239 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8575 -0.9353 -0.0004 28 1 3.4409 -1.0083 -0.0037 29 1 5.8931 -1.0912 -0.1936 30 1 7.9627 0.1366 -0.4222 31 1 8.0955 2.8583 0.3213 32 1 7.9542 2.7667 -1.4507 33 1 10.3151 3.7939 0.2182 34 1 10.3395 3.7715 -1.5614 35 1 13.2324 5.8636 -0.6675 36 1 6.0182 3.1773 -0.4129 37 1 3.5652 3.2573 -0.2315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842159252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:19 Heat of formation + Delta-G solvation = 20.549786 kcal Electronic energy + Delta-G solvation = -18995.670606 eV Core-core repulsion = 15931.284989 eV Total energy + Delta-G solvation = -3064.385617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41294 -39.67815 -38.37646 -36.23836 -35.30608 -33.54324 -32.64212 -31.84302 -29.69750 -27.78745 -25.44772 -24.09407 -23.51801 -23.06403 -21.07800 -19.67846 -18.73282 -18.43659 -17.87828 -17.11184 -16.54902 -16.28308 -15.98158 -15.57889 -15.20061 -14.84083 -14.69511 -14.42856 -14.28377 -14.21860 -14.02552 -13.84674 -13.32847 -13.22872 -13.09208 -12.85792 -12.67026 -12.49687 -12.37906 -12.04314 -11.57259 -11.47134 -11.20891 -10.99458 -10.56278 -9.94471 -9.75713 -8.20638 -8.01804 -6.28460 0.42001 0.55255 1.38857 1.42643 1.48748 1.51844 1.92183 1.94748 2.28872 2.39700 2.56260 2.93545 3.14026 3.19463 3.74764 3.90223 3.99776 4.13020 4.30122 4.38770 4.47138 4.67500 4.72161 4.82111 4.89040 5.00654 5.01955 5.09976 5.32152 5.38108 5.44229 5.46529 5.59272 5.60270 5.76505 5.79027 6.16230 6.37371 6.71195 6.78471 6.84595 6.88917 7.40363 8.90329 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046459 B = 0.002834 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.536954 B = 9877.520842 C =10253.250343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.001 4.001 3 O -0.275 6.275 4 C 0.033 3.967 5 C -0.150 4.150 6 C -0.165 4.165 7 C 0.187 3.813 8 N -0.745 5.745 9 C 0.142 3.858 10 C 0.012 3.988 11 H 0.130 0.870 12 C 0.250 3.750 13 N -0.501 5.501 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.056 0.944 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.947 3.053 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.170 4.170 24 C -0.100 4.100 25 H 0.098 0.902 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.141 0.859 30 H 0.403 0.597 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.140 0.860 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.756 -9.375 4.873 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.062 4.062 3 O -0.186 6.186 4 C -0.012 4.012 5 C -0.169 4.169 6 C -0.188 4.188 7 C 0.084 3.916 8 N -0.376 5.376 9 C 0.017 3.983 10 C -0.010 4.010 11 H 0.148 0.852 12 C -0.066 4.066 13 N -0.178 5.178 14 C -0.001 4.001 15 C -0.576 4.576 16 H 0.074 0.926 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.193 4.193 24 C -0.119 4.119 25 H 0.116 0.884 26 H 0.167 0.833 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.158 0.842 30 H 0.238 0.762 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.394 -9.689 3.424 21.948 hybrid contribution 1.427 -0.025 0.118 1.432 sum -17.967 -9.714 3.542 20.730 Atomic orbital electron populations 1.23790 0.93108 1.04144 1.06961 1.22948 0.93899 0.88276 1.01040 1.84298 1.17457 1.32309 1.84566 1.18934 0.81209 0.95044 1.05993 1.21155 0.94850 0.97258 1.03603 1.20613 0.93399 0.97359 1.07404 1.17977 0.83916 0.94178 0.95505 1.44731 1.02667 1.08452 1.81776 1.21343 0.87072 0.87075 1.02840 1.19374 0.95913 0.97243 0.88488 0.85226 1.29441 0.90837 0.91763 0.94555 1.80959 1.10989 1.12801 1.13091 1.18983 0.92867 0.90356 0.97911 1.21565 0.92691 0.92763 1.50611 0.92616 1.25694 1.03024 0.95064 0.95003 1.70030 1.35392 0.99441 1.51303 0.85661 0.80887 0.78437 0.77673 1.19353 1.21311 1.19924 1.20688 0.93579 0.97235 1.07760 1.20364 0.92986 0.96985 1.01530 0.88402 0.83302 0.83646 0.83176 0.84162 0.76187 0.88536 0.92091 0.93991 0.97684 0.92710 0.84238 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.42 14.63 67.09 0.98 -2.43 16 2 C 0.00 -0.03 10.00 67.09 0.67 0.65 16 3 O -0.28 -6.28 10.01 -33.74 -0.34 -6.62 16 4 C 0.03 0.74 6.66 22.51 0.15 0.89 16 5 C -0.15 -2.94 9.19 22.35 0.21 -2.73 16 6 C -0.17 -3.37 9.89 22.39 0.22 -3.14 16 7 C 0.19 4.30 6.66 38.15 0.25 4.56 16 8 N -0.75 -17.01 5.53 -339.26 -1.88 -18.89 16 9 C 0.14 3.60 4.28 86.38 0.37 3.97 16 10 C 0.01 0.37 2.26 -12.60 -0.03 0.34 16 11 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 12 C 0.25 9.32 13.44 89.47 1.20 10.52 16 13 N -0.50 -20.80 18.52 19.98 0.37 -20.43 16 14 C 0.04 1.62 4.42 29.85 0.13 1.75 16 15 C -0.54 -27.20 8.60 25.60 0.22 -26.98 16 16 H 0.06 2.78 7.59 -2.91 -0.02 2.76 16 17 C 0.01 0.60 5.46 84.66 0.46 1.06 16 18 N -0.92 -51.52 13.29 21.45 0.28 -51.23 16 19 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.17 -3.89 9.31 22.39 0.21 -3.68 16 24 C -0.10 -2.26 9.98 22.36 0.22 -2.04 16 25 H 0.10 1.49 8.06 -2.91 -0.02 1.47 16 26 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 27 H 0.15 1.74 5.57 -2.91 -0.02 1.73 16 28 H 0.15 2.10 5.71 -2.91 -0.02 2.08 16 29 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.40 8.51 8.23 -92.71 -0.76 7.75 16 31 H 0.10 2.19 7.94 -2.38 -0.02 2.17 16 32 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 34 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 36 H 0.14 2.94 6.73 -2.91 -0.02 2.92 16 37 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -62.87 327.68 6.06 -56.80 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.32 Total: 13.27 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 5.27 Total: -17.27 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -1.22 Total: -90.55 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.34 Total: -6.62 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -62.87 6.06 -56.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842159252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.352 kcal (2) G-P(sol) polarization free energy of solvation -62.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds