Wall clock time and date at job start Mon Mar 30 2020 01:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36203 * 125.56199 * 2 1 4 4 C 1.34841 * 109.48648 * 180.02562 * 3 2 1 5 5 C 1.41024 * 107.73583 * 359.97438 * 4 3 2 6 6 C 1.46144 * 134.51572 * 180.02562 * 5 4 3 7 7 C 1.34661 * 118.86942 * 179.97438 * 6 5 4 8 8 N 1.36509 * 121.19856 * 0.02562 * 7 6 5 9 9 C 1.46498 * 118.91065 * 180.28308 * 8 7 6 10 10 C 1.53007 * 109.46732 * 272.57788 * 9 8 7 11 11 C 1.50700 * 115.54534 * 185.79649 * 10 9 8 12 12 H 1.08000 * 120.00074 * 144.69711 * 11 10 9 13 13 C 1.37881 * 120.00175 * 324.68906 * 11 10 9 14 14 N 1.31507 * 120.00027 * 163.02429 * 13 11 10 15 15 Si 1.86800 * 119.99997 * 343.02671 * 13 11 10 16 16 H 1.48497 * 109.47202 * 95.25197 * 15 13 11 17 17 H 1.48500 * 109.47247 * 215.25657 * 15 13 11 18 18 H 1.48506 * 109.47223 * 335.25589 * 15 13 11 19 19 C 1.52988 * 117.50057 * 40.11937 * 10 9 8 20 20 C 1.52999 * 117.49761 * 331.45999 * 10 9 8 21 21 C 1.34539 * 122.17505 * 359.97438 * 8 7 6 22 22 O 1.22033 * 119.83263 * 180.02562 * 21 8 7 23 23 C 1.37597 * 125.55847 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47490 * 270.00116 * 1 2 3 25 25 H 1.09001 * 109.47108 * 30.00500 * 1 2 3 26 26 H 1.09004 * 109.47331 * 149.99812 * 1 2 3 27 27 H 1.08001 * 125.25558 * 359.97438 * 3 2 1 28 28 H 1.08002 * 126.12952 * 179.97438 * 4 3 2 29 29 H 1.07990 * 120.56398 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.39745 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47097 * 32.57256 * 9 8 7 32 32 H 1.08996 * 109.47192 * 152.57580 * 9 8 7 33 33 H 0.97004 * 120.00267 * 179.97438 * 14 13 11 34 34 H 1.09004 * 117.50488 * 0.02562 * 19 10 9 35 35 H 1.09005 * 117.49963 * 145.01810 * 19 10 9 36 36 H 1.08999 * 117.49783 * 214.98201 * 20 10 9 37 37 H 1.08997 * 117.49614 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1080 0.0000 4 6 3.5528 0.7346 -0.0006 5 6 3.5936 -0.6750 -0.0003 6 6 4.6650 -1.6690 -0.0002 7 6 4.3395 -2.9757 0.0005 8 7 3.0356 -3.3797 0.0006 9 6 2.7385 -4.8142 0.0078 10 6 2.7009 -5.3343 -1.4307 11 6 2.2715 -6.7699 -1.5916 12 1 1.6860 -7.0654 -2.4497 13 6 2.6261 -7.7060 -0.6435 14 7 1.9957 -8.8589 -0.5898 15 14 4.0020 -7.3367 0.5648 16 1 3.4244 -6.8064 1.8258 17 1 4.7567 -8.5831 0.8516 18 1 4.9189 -6.3270 -0.0227 19 6 3.7530 -4.7983 -2.4034 20 6 2.2953 -4.3483 -2.5280 21 6 2.0142 -2.5039 0.0005 22 8 0.8643 -2.9124 0.0011 23 6 2.2651 -1.1194 -0.0005 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.9022 2.1280 -0.0004 28 1 4.4062 1.3965 -0.0011 29 1 5.7000 -1.3609 -0.0007 30 1 5.1245 -3.7176 0.0010 31 1 3.5121 -5.3427 0.5651 32 1 1.7709 -4.9825 0.4805 33 1 2.2454 -9.5177 0.0770 34 1 4.4724 -4.0754 -2.0187 35 1 4.1345 -5.4839 -3.1602 36 1 1.7183 -4.7380 -3.3666 37 1 2.0557 -3.3291 -2.2252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853667610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:28 Heat of formation + Delta-G solvation = 81.905114 kcal Electronic energy + Delta-G solvation = -21320.242218 eV Core-core repulsion = 18258.517168 eV Total energy + Delta-G solvation = -3061.725050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79669 -39.76487 -36.87318 -35.96303 -32.99519 -32.26707 -31.11001 -29.19010 -27.44052 -26.36179 -25.19529 -22.98124 -22.10614 -21.24281 -20.11190 -19.13939 -17.83318 -17.04603 -16.77053 -16.44489 -15.71852 -15.33199 -14.77897 -14.52550 -14.34196 -13.52411 -13.30552 -13.16114 -13.11315 -12.68832 -12.45572 -12.35654 -12.14594 -12.00459 -11.48439 -11.35055 -11.03340 -10.64449 -10.38462 -10.14625 -9.73377 -9.63135 -9.27786 -9.12351 -8.75995 -8.35656 -8.32848 -7.24275 -6.25867 -4.15568 1.42991 1.89179 2.58704 2.91757 3.10823 3.22137 3.24432 3.40159 4.01954 4.24721 4.67719 4.75139 4.77219 4.83720 5.08717 5.18700 5.23646 5.31968 5.47724 5.56719 5.65268 5.75604 5.79563 5.87260 6.04708 6.17576 6.29538 6.40912 6.46174 6.56932 6.69102 6.77222 6.88087 6.99088 7.07189 7.17544 7.23357 7.63027 7.66230 8.37665 8.45211 8.82392 9.38063 10.86823 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.006246 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.783310 B = 4481.573669 C = 4798.298215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.418 5.418 3 C 0.035 3.965 4 C -0.203 4.203 5 C -0.050 4.050 6 C -0.187 4.187 7 C 0.104 3.896 8 N -0.497 5.497 9 C 0.120 3.880 10 C 0.002 3.998 11 C -0.480 4.480 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.880 5.880 15 Si 0.871 3.129 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.259 1.259 19 C -0.211 4.211 20 C -0.177 4.177 21 C 0.561 3.439 22 O -0.547 6.547 23 C -0.062 4.062 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.171 0.829 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.268 0.732 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 18.706 2.930 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.093 5.093 3 C -0.098 4.098 4 C -0.228 4.228 5 C -0.059 4.059 6 C -0.211 4.211 7 C -0.019 4.019 8 N -0.211 5.211 9 C 0.001 3.999 10 C 0.000 4.000 11 C -0.518 4.518 12 H 0.099 0.901 13 C -0.126 4.126 14 N -0.516 5.516 15 Si 0.701 3.299 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.185 1.185 19 C -0.249 4.249 20 C -0.215 4.215 21 C 0.358 3.642 22 O -0.429 6.429 23 C -0.174 4.174 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.188 0.812 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.173 0.827 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.848 18.177 3.031 18.647 hybrid contribution 0.814 0.198 0.588 1.024 sum 3.663 18.376 3.619 19.083 Atomic orbital electron populations 1.22167 0.76268 1.04945 1.03647 1.43551 1.06418 1.04093 1.55261 1.21933 0.90385 0.91135 1.06344 1.20500 0.95985 0.93369 1.12978 1.19298 0.91374 0.93665 1.01560 1.20782 0.98024 0.89623 1.12701 1.21546 0.86076 0.96658 0.97586 1.45033 1.05043 1.09177 1.61870 1.22138 1.03160 0.75056 0.99585 1.19599 0.99166 0.95019 0.86183 1.20269 1.34033 0.87879 1.09590 0.90094 1.24982 0.95748 0.95201 0.96688 1.69948 1.38523 1.08038 1.35088 0.87128 0.83834 0.77584 0.81390 1.20432 1.21614 1.18485 1.23274 0.91451 1.03848 1.06343 1.22696 0.97766 0.98267 1.02760 1.15365 0.85102 0.84417 0.79278 1.90932 1.19439 1.80250 1.52287 1.18966 0.90690 0.88949 1.18748 0.90808 0.89939 0.88369 0.81224 0.83769 0.84144 0.82663 0.90663 0.87715 0.92241 0.91197 0.89572 0.90019 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.84 59.84 0.65 1.45 16 2 N -0.42 -5.90 3.17 -121.55 -0.39 -6.29 16 3 C 0.04 0.40 11.34 -16.82 -0.19 0.21 16 4 C -0.20 -2.49 10.84 -39.73 -0.43 -2.92 16 5 C -0.05 -0.77 6.44 -104.98 -0.68 -1.45 16 6 C -0.19 -2.68 10.29 -37.68 -0.39 -3.07 16 7 C 0.10 1.70 7.96 -16.74 -0.13 1.56 16 8 N -0.50 -9.82 1.89 -119.73 -0.23 -10.04 16 9 C 0.12 2.70 4.26 -4.04 -0.02 2.69 16 10 C 0.00 0.05 1.82 -155.66 -0.28 -0.23 16 11 C -0.48 -13.45 9.54 -34.44 -0.33 -13.78 16 12 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 13 C 0.08 2.18 5.38 -17.82 -0.10 2.08 16 14 N -0.88 -26.10 13.96 55.43 0.77 -25.33 16 15 Si 0.87 20.45 24.15 -169.99 -4.11 16.35 16 16 H -0.28 -6.34 7.03 56.52 0.40 -5.94 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.26 -5.62 6.81 56.52 0.38 -5.23 16 19 C -0.21 -4.52 9.60 -26.70 -0.26 -4.78 16 20 C -0.18 -4.01 9.54 -26.70 -0.25 -4.26 16 21 C 0.56 11.43 5.55 -15.43 -0.09 11.34 16 22 O -0.55 -12.57 14.97 4.89 0.07 -12.50 16 23 C -0.06 -1.08 6.86 -83.65 -0.57 -1.65 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 1.35 7.05 -51.93 -0.37 0.99 16 27 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.16 2.25 7.84 -52.48 -0.41 1.84 16 31 H 0.08 1.65 2.86 -51.93 -0.15 1.50 16 32 H 0.10 2.55 7.24 -51.93 -0.38 2.17 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.34 5.63 -51.93 -0.29 1.05 16 35 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 36 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.07 1.53 5.81 -51.93 -0.30 1.23 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -32.78 298.87 -6.87 -39.64 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.43 Total: 6.48 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -3.07 Total: -12.81 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.16 Total: -41.66 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.07 Total: -12.50 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.11 Total: 16.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.78 -6.87 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853667610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.549 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds