Wall clock time and date at job start Mon Mar 30 2020 01:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36203 * 125.56199 * 2 1 4 4 C 1.34841 * 109.48648 * 180.02562 * 3 2 1 5 5 C 1.41024 * 107.73583 * 359.97438 * 4 3 2 6 6 C 1.46144 * 134.51572 * 180.02562 * 5 4 3 7 7 C 1.34661 * 118.86942 * 179.97438 * 6 5 4 8 8 N 1.36509 * 121.19856 * 0.02562 * 7 6 5 9 9 C 1.46498 * 118.91065 * 180.28308 * 8 7 6 10 10 C 1.53007 * 109.46732 * 272.57788 * 9 8 7 11 11 C 1.50700 * 115.54534 * 185.79649 * 10 9 8 12 12 H 1.08000 * 120.00074 * 144.69711 * 11 10 9 13 13 C 1.37881 * 120.00175 * 324.68906 * 11 10 9 14 14 N 1.31507 * 120.00027 * 163.02429 * 13 11 10 15 15 Si 1.86800 * 119.99997 * 343.02671 * 13 11 10 16 16 H 1.48497 * 109.47202 * 95.25197 * 15 13 11 17 17 H 1.48500 * 109.47247 * 215.25657 * 15 13 11 18 18 H 1.48506 * 109.47223 * 335.25589 * 15 13 11 19 19 C 1.52988 * 117.50057 * 40.11937 * 10 9 8 20 20 C 1.52999 * 117.49761 * 331.45999 * 10 9 8 21 21 C 1.34539 * 122.17505 * 359.97438 * 8 7 6 22 22 O 1.22033 * 119.83263 * 180.02562 * 21 8 7 23 23 C 1.37597 * 125.55847 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47490 * 270.00116 * 1 2 3 25 25 H 1.09001 * 109.47108 * 30.00500 * 1 2 3 26 26 H 1.09004 * 109.47331 * 149.99812 * 1 2 3 27 27 H 1.08001 * 125.25558 * 359.97438 * 3 2 1 28 28 H 1.08002 * 126.12952 * 179.97438 * 4 3 2 29 29 H 1.07990 * 120.56398 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.39745 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47097 * 32.57256 * 9 8 7 32 32 H 1.08996 * 109.47192 * 152.57580 * 9 8 7 33 33 H 0.97004 * 120.00267 * 179.97438 * 14 13 11 34 34 H 1.09004 * 117.50488 * 0.02562 * 19 10 9 35 35 H 1.09005 * 117.49963 * 145.01810 * 19 10 9 36 36 H 1.08999 * 117.49783 * 214.98201 * 20 10 9 37 37 H 1.08997 * 117.49614 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1080 0.0000 4 6 3.5528 0.7346 -0.0006 5 6 3.5936 -0.6750 -0.0003 6 6 4.6650 -1.6690 -0.0002 7 6 4.3395 -2.9757 0.0005 8 7 3.0356 -3.3797 0.0006 9 6 2.7385 -4.8142 0.0078 10 6 2.7009 -5.3343 -1.4307 11 6 2.2715 -6.7699 -1.5916 12 1 1.6860 -7.0654 -2.4497 13 6 2.6261 -7.7060 -0.6435 14 7 1.9957 -8.8589 -0.5898 15 14 4.0020 -7.3367 0.5648 16 1 3.4244 -6.8064 1.8258 17 1 4.7567 -8.5831 0.8516 18 1 4.9189 -6.3270 -0.0227 19 6 3.7530 -4.7983 -2.4034 20 6 2.2953 -4.3483 -2.5280 21 6 2.0142 -2.5039 0.0005 22 8 0.8643 -2.9124 0.0011 23 6 2.2651 -1.1194 -0.0005 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.9022 2.1280 -0.0004 28 1 4.4062 1.3965 -0.0011 29 1 5.7000 -1.3609 -0.0007 30 1 5.1245 -3.7176 0.0010 31 1 3.5121 -5.3427 0.5651 32 1 1.7709 -4.9825 0.4805 33 1 2.2454 -9.5177 0.0770 34 1 4.4724 -4.0754 -2.0187 35 1 4.1345 -5.4839 -3.1602 36 1 1.7183 -4.7380 -3.3666 37 1 2.0557 -3.3291 -2.2252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853667610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:27 Heat of formation + Delta-G solvation = 61.018372 kcal Electronic energy + Delta-G solvation = -21321.147935 eV Core-core repulsion = 18258.517168 eV Total energy + Delta-G solvation = -3062.630767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.99394 -41.06590 -38.52012 -37.44699 -34.47067 -34.08935 -32.28968 -30.39769 -29.17480 -27.37765 -27.05356 -24.24590 -23.43426 -22.93618 -21.23475 -20.97272 -19.02739 -18.74074 -18.17838 -17.91455 -17.20141 -16.77223 -16.06090 -15.97463 -15.61497 -15.11248 -14.97812 -14.60576 -14.33318 -14.11383 -13.94257 -13.58517 -13.34723 -13.12910 -12.91667 -12.82878 -12.60907 -12.53206 -12.15169 -11.91918 -11.55367 -11.28952 -11.05808 -10.75244 -10.39496 -10.28248 -9.35842 -8.48761 -8.41192 -6.37973 0.23116 0.76410 1.22966 1.30019 1.39334 1.51071 1.88179 2.14913 2.26215 2.72429 2.75869 3.31354 3.61977 3.82852 3.87539 3.91551 3.97101 4.09910 4.16890 4.23789 4.33634 4.42741 4.46312 4.56604 4.66617 4.76625 4.79035 4.94883 5.01121 5.10905 5.15946 5.27238 5.39565 5.57549 5.68565 5.77616 5.92723 6.21468 6.29167 6.36520 6.58515 7.01699 7.19624 8.75485 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.006246 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.783310 B = 4481.573669 C = 4798.298215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.428 5.428 3 C 0.060 3.940 4 C -0.207 4.207 5 C -0.058 4.058 6 C -0.157 4.157 7 C 0.066 3.934 8 N -0.501 5.501 9 C 0.134 3.866 10 C -0.020 4.020 11 C -0.499 4.499 12 H 0.031 0.969 13 C 0.022 3.978 14 N -0.932 5.932 15 Si 0.934 3.066 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.221 1.221 19 C -0.178 4.178 20 C -0.179 4.179 21 C 0.545 3.455 22 O -0.600 6.600 23 C -0.109 4.109 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.062 0.938 27 H 0.221 0.779 28 H 0.180 0.820 29 H 0.184 0.816 30 H 0.178 0.822 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.271 0.729 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 23.086 3.849 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.103 5.103 3 C -0.074 4.074 4 C -0.231 4.231 5 C -0.068 4.068 6 C -0.180 4.180 7 C -0.054 4.054 8 N -0.215 5.215 9 C 0.012 3.988 10 C -0.022 4.022 11 C -0.536 4.536 12 H 0.049 0.951 13 C -0.177 4.177 14 N -0.570 5.570 15 Si 0.759 3.241 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.144 1.144 19 C -0.215 4.215 20 C -0.217 4.217 21 C 0.346 3.654 22 O -0.487 6.487 23 C -0.220 4.220 24 H 0.098 0.902 25 H 0.143 0.857 26 H 0.081 0.919 27 H 0.237 0.763 28 H 0.198 0.802 29 H 0.201 0.799 30 H 0.195 0.805 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.326 22.601 3.929 23.796 hybrid contribution -0.366 -0.989 0.233 1.080 sum 5.960 21.612 4.163 22.802 Atomic orbital electron populations 1.22269 0.75416 1.05259 1.04226 1.43897 1.07297 1.04041 1.55030 1.22870 0.89944 0.92190 1.02396 1.20978 0.97625 0.92087 1.12379 1.19815 0.90597 0.95557 1.00834 1.21343 0.99725 0.88511 1.08398 1.22024 0.84775 0.98358 1.00284 1.44879 1.06539 1.07500 1.62601 1.21637 1.01751 0.77537 0.97837 1.19484 1.01738 0.92982 0.88000 1.20375 1.34046 0.90758 1.08456 0.95106 1.25900 0.98215 0.94634 0.98962 1.70091 1.40561 1.09588 1.36749 0.86108 0.80602 0.78541 0.78877 1.19464 1.21232 1.14382 1.23272 0.90890 1.03215 1.04142 1.22609 0.99302 0.97893 1.01866 1.15900 0.84566 0.85921 0.79020 1.90888 1.21322 1.81132 1.55362 1.18926 0.92714 0.88338 1.22062 0.90156 0.85676 0.91920 0.76278 0.80233 0.79865 0.80512 0.89649 0.91269 0.91953 0.87800 0.89497 0.91352 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 10.84 127.77 1.38 2.87 16 2 N -0.43 -11.05 3.17 -538.46 -1.71 -12.76 16 3 C 0.06 1.03 11.34 83.23 0.94 1.97 16 4 C -0.21 -3.92 10.84 22.17 0.24 -3.68 16 5 C -0.06 -1.57 6.44 -20.09 -0.13 -1.70 16 6 C -0.16 -3.76 10.29 23.50 0.24 -3.52 16 7 C 0.07 1.93 7.96 83.14 0.66 2.59 16 8 N -0.50 -19.50 1.89 -650.93 -1.23 -20.73 16 9 C 0.13 6.08 4.26 86.38 0.37 6.45 16 10 C -0.02 -1.00 1.82 -52.93 -0.10 -1.10 16 11 C -0.50 -29.56 9.54 25.60 0.24 -29.32 16 12 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 13 C 0.02 1.30 5.38 84.66 0.46 1.76 16 14 N -0.93 -58.17 13.96 21.45 0.30 -57.87 16 15 Si 0.93 42.13 24.15 68.60 1.66 43.79 16 16 H -0.27 -11.69 7.03 99.48 0.70 -10.99 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.22 -8.53 6.81 99.48 0.68 -7.85 16 19 C -0.18 -7.37 9.60 30.61 0.29 -7.08 16 20 C -0.18 -8.33 9.54 30.62 0.29 -8.04 16 21 C 0.55 22.64 5.55 84.88 0.47 23.11 16 22 O -0.60 -29.46 14.97 -5.42 -0.08 -29.54 16 23 C -0.11 -3.69 6.86 39.29 0.27 -3.42 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.82 7.05 -2.39 -0.02 1.80 16 27 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 28 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 29 H 0.18 2.77 8.06 -2.92 -0.02 2.74 16 30 H 0.18 4.28 7.84 -2.91 -0.02 4.26 16 31 H 0.09 3.62 2.86 -2.38 -0.01 3.62 16 32 H 0.07 3.58 7.24 -2.39 -0.02 3.56 16 33 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 34 H 0.10 3.62 5.63 -2.39 -0.01 3.60 16 35 H 0.09 3.60 8.14 -2.38 -0.02 3.58 16 36 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.07 3.22 5.81 -2.39 -0.01 3.20 16 Total: -1.00 -79.52 298.87 5.63 -73.89 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.05 Total: 22.32 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 5.64 Total: -19.10 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.64 Total: -91.35 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.08 Total: -29.54 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.66 Total: 43.79 kcal Total: -79.52 5.63 -73.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853667610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.913 kcal (2) G-P(sol) polarization free energy of solvation -79.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds