Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47212 * 299.99952 * 3 2 1 6 6 H 1.48503 * 109.47080 * 59.99790 * 3 2 1 7 7 C 1.37876 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47245 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99710 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46745 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.47213 * 64.99776 * 12 11 10 14 14 C 1.42898 * 113.99789 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46996 * 180.02562 * 14 13 12 16 16 O 1.45197 * 109.47455 * 65.00066 * 15 14 13 17 17 C 1.34223 * 117.00370 * 180.02562 * 16 15 14 18 18 O 1.20830 * 119.99676 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00330 * 179.97438 * 17 16 15 20 20 C 1.53781 * 113.61615 * 179.97438 * 19 17 16 21 21 C 1.53786 * 87.17350 * 219.89494 * 20 19 17 22 22 C 1.53781 * 113.69134 * 82.46277 * 19 17 16 23 23 H 0.97003 * 119.99871 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47070 * 60.00299 * 9 7 2 25 25 H 1.09000 * 109.47589 * 300.00274 * 9 7 2 26 26 H 1.08993 * 109.47579 * 60.00421 * 11 10 9 27 27 H 1.08999 * 109.47596 * 299.99354 * 11 10 9 28 28 H 1.08998 * 109.46846 * 304.99649 * 12 11 10 29 29 H 1.08998 * 109.46780 * 185.00121 * 12 11 10 30 30 H 1.08996 * 109.46927 * 60.00282 * 14 13 12 31 31 H 1.08996 * 109.47091 * 300.00103 * 14 13 12 32 32 H 1.09009 * 109.46590 * 305.00149 * 15 14 13 33 33 H 1.08993 * 109.47228 * 185.00345 * 15 14 13 34 34 H 1.08999 * 112.84914 * 311.19807 * 19 17 16 35 35 H 1.09002 * 113.61445 * 334.48493 * 20 19 17 36 36 H 1.09002 * 113.61408 * 105.30224 * 20 19 17 37 37 H 1.08992 * 113.61675 * 140.02412 * 21 20 19 38 38 H 1.09000 * 113.60973 * 270.92699 * 21 20 19 39 39 H 1.09005 * 113.61471 * 254.54463 * 22 19 17 40 40 H 1.08996 * 113.61178 * 25.35805 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8753 -0.0011 12 6 2.6481 -5.9562 -0.0004 13 8 3.3866 -5.8897 1.2212 14 6 4.4282 -6.8627 1.3243 15 6 5.1474 -6.6996 2.6648 16 8 4.2288 -7.0042 3.7472 17 6 4.7069 -6.9077 4.9977 18 8 5.8553 -6.5799 5.1817 19 6 3.8116 -7.2080 6.1721 20 6 4.5087 -7.0522 7.5339 21 6 3.7513 -8.3139 7.9804 22 6 3.6948 -8.7075 6.4925 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 0.9453 -4.9822 -0.8913 27 1 0.9447 -4.9827 0.8886 28 1 3.3222 -5.7955 -0.8418 29 1 2.1821 -6.9374 -0.0905 30 1 5.1393 -6.7212 0.5105 31 1 3.9988 -7.8625 1.2620 32 1 5.5000 -5.6730 2.7655 33 1 5.9969 -7.3812 2.7066 34 1 2.8501 -6.6980 6.1125 35 1 5.5897 -7.1849 7.4888 36 1 4.2150 -6.1523 8.0744 37 1 4.3506 -8.9902 8.5897 38 1 2.7735 -8.1054 8.4145 39 1 2.7426 -9.1452 6.1925 40 1 4.5526 -9.2928 6.1614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861318301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = -168.329914 kcal Electronic energy + Delta-G solvation = -20433.542323 eV Core-core repulsion = 17021.364597 eV Total energy + Delta-G solvation = -3412.177726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83566 -38.59302 -37.86923 -36.51890 -36.04501 -32.73041 -31.11366 -29.00201 -27.32927 -26.70090 -25.98829 -23.03861 -22.39256 -21.89699 -21.54884 -19.65238 -18.06722 -17.15786 -16.81075 -16.38900 -16.14894 -16.03010 -15.51470 -14.93936 -14.70278 -14.37418 -14.09966 -13.78443 -13.29010 -12.97993 -12.83691 -12.72794 -12.36599 -12.07668 -11.70579 -11.63431 -11.54610 -11.13759 -10.91759 -10.80417 -10.77497 -10.76059 -10.72829 -10.46342 -10.34024 -9.97663 -9.47638 -9.05348 -8.80619 -8.14156 -6.08124 -4.09241 2.10443 2.59417 3.31574 3.37791 3.45008 3.73718 4.10924 4.20160 4.37613 4.39347 4.45628 4.79254 4.83553 4.89210 5.04147 5.19959 5.25290 5.28432 5.31890 5.38016 5.39949 5.44779 5.53631 5.57755 5.61095 5.66219 5.70413 6.02720 6.03567 6.04699 6.24372 6.38349 7.12463 7.34900 7.46458 7.69685 7.83245 8.18548 8.61302 9.04678 9.55467 11.03604 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.017549 B = 0.003205 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.107992 B = 8734.362781 C = 9471.388519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.062 3.938 15 C 0.069 3.931 16 O -0.344 6.344 17 C 0.471 3.529 18 O -0.513 6.513 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.141 4.141 22 C -0.122 4.122 23 H 0.263 0.737 24 H 0.005 0.995 25 H 0.006 0.994 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.733 -20.265 10.370 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.015 4.015 15 C -0.005 4.005 16 O -0.261 6.261 17 C 0.314 3.686 18 O -0.401 6.401 19 C -0.132 4.132 20 C -0.159 4.159 21 C -0.178 4.178 22 C -0.159 4.159 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.094 -19.869 10.522 23.576 hybrid contribution 0.159 0.792 -0.419 0.910 sum 7.253 -19.078 10.102 22.773 Atomic orbital electron populations 1.69976 1.06095 1.27000 1.50829 1.24954 0.94989 0.99443 0.95204 0.86281 0.80059 0.82573 0.77590 1.19471 1.20859 1.20826 1.21107 0.94130 0.89360 1.50444 0.91500 1.20213 0.88798 0.83677 0.95346 1.87911 1.35191 1.12666 1.95165 1.22254 0.93705 0.85623 0.99858 1.22593 0.94082 0.97357 0.86788 1.88103 1.47140 1.54871 1.38574 1.22494 0.91278 0.93038 0.94708 1.23134 0.90988 1.02747 0.83593 1.86565 1.44496 1.79744 1.15246 1.23595 0.87476 0.73249 0.84285 1.90645 1.19592 1.43633 1.86214 1.22607 1.00056 1.00136 0.90376 1.22927 1.01012 0.99019 0.92936 1.22870 1.01255 0.97737 0.95961 1.22885 1.03316 0.93200 0.96531 0.92744 0.97754 0.97648 0.92943 0.93609 0.92700 0.92696 0.91045 0.92549 0.89908 0.89946 0.85504 0.88630 0.90366 0.90666 0.89460 0.90008 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -15.57 9.43 -34.44 -0.32 -15.90 16 8 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 9 C 0.19 5.51 5.69 36.00 0.20 5.71 16 10 O -0.39 -9.90 10.29 -40.08 -0.41 -10.31 16 11 C 0.06 1.22 6.32 37.16 0.23 1.46 16 12 C 0.07 1.06 6.32 37.16 0.23 1.29 16 13 O -0.37 -6.31 10.28 -48.79 -0.50 -6.81 16 14 C 0.06 0.76 6.33 37.16 0.24 0.99 16 15 C 0.07 0.88 5.84 37.16 0.22 1.09 16 16 O -0.34 -4.78 10.19 -42.00 -0.43 -5.21 16 17 C 0.47 6.20 7.49 36.00 0.27 6.47 16 18 O -0.51 -7.92 15.65 -18.75 -0.29 -8.21 16 19 C -0.11 -1.08 4.26 -90.96 -0.39 -1.47 16 20 C -0.12 -1.02 7.40 -25.92 -0.19 -1.22 16 21 C -0.14 -0.89 8.10 -25.80 -0.21 -1.10 16 22 C -0.12 -0.89 7.64 -25.80 -0.20 -1.09 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.18 8.13 -51.92 -0.42 0.76 16 33 H 0.08 0.85 8.13 -51.93 -0.42 0.42 16 34 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.91 7.44 -51.93 -0.39 0.52 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -35.27 344.60 -7.43 -42.70 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -6.69 Total: -5.76 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.01 Total: -2.23 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.74 Total: -26.67 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.64 Total: -30.55 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.27 -7.43 -42.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861318301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.625 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds