Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46975 * 2 1 4 4 C 1.50701 * 109.46908 * 119.99952 * 2 1 3 5 5 H 1.07998 * 120.00389 * 120.00258 * 4 2 1 6 6 C 1.37876 * 119.99788 * 299.99712 * 4 2 1 7 7 N 1.31513 * 120.00133 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00106 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47177 * 90.00117 * 8 6 4 10 10 H 1.48505 * 109.47043 * 209.99888 * 8 6 4 11 11 H 1.48500 * 109.47123 * 329.99547 * 8 6 4 12 12 C 1.50706 * 109.47229 * 239.99763 * 2 1 3 13 13 O 1.21293 * 119.99651 * 274.36378 * 12 2 1 14 14 N 1.34767 * 119.99993 * 94.35868 * 12 2 1 15 15 C 1.46502 * 120.00149 * 185.11694 * 14 12 2 16 16 C 1.40021 * 119.99985 * 5.11861 * 14 12 2 17 17 C 1.38400 * 120.17435 * 91.89535 * 16 14 12 18 18 C 1.38719 * 120.57908 * 179.71842 * 17 16 14 19 19 C 1.36659 * 120.59502 * 0.55368 * 18 17 16 20 20 C 1.39737 * 119.89518 * 359.72557 * 19 18 17 21 21 C 1.46486 * 133.98224 * 179.97438 * 20 19 18 22 22 C 1.34250 * 107.00742 * 180.02562 * 21 20 19 23 23 N 1.36770 * 109.91845 * 0.02562 * 22 21 20 24 24 H 0.96992 * 125.08321 * 180.02562 * 23 22 21 25 25 C 1.37784 * 109.84950 * 0.02562 * 23 22 21 26 26 H 1.08999 * 109.46939 * 173.32991 * 1 2 3 27 27 H 1.09002 * 109.46729 * 53.33370 * 1 2 3 28 28 H 1.08994 * 109.47251 * 293.32930 * 1 2 3 29 29 H 0.96998 * 120.00796 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47338 * 94.07093 * 15 14 12 31 31 H 1.08993 * 109.47212 * 214.07148 * 15 14 12 32 32 H 1.09000 * 109.46585 * 334.07360 * 15 14 12 33 33 H 1.08000 * 119.70612 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.70269 * 180.28302 * 18 17 16 35 35 H 1.07991 * 120.05107 * 179.74292 * 19 18 17 36 36 H 1.08000 * 126.49212 * 0.02562 * 21 20 19 37 37 H 1.08005 * 125.04533 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6248 1.2792 2.6540 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9953 3.9067 11 1 0.8472 2.1766 1.4919 12 6 2.0324 -0.7105 -1.2305 13 8 2.1592 -1.9167 -1.2249 14 7 2.3407 -0.0056 -2.3369 15 6 2.7214 -0.7033 -3.5676 16 6 2.2971 1.3937 -2.3103 17 6 3.4333 2.1193 -1.9970 18 6 3.4011 3.5059 -1.9738 19 6 2.2443 4.1794 -2.2490 20 6 1.0825 3.4691 -2.5625 21 6 -0.2888 3.8593 -2.8992 22 6 -0.9801 2.7269 -3.1045 23 7 -0.1639 1.6440 -2.9263 24 1 -0.4375 0.7182 -3.0206 25 6 1.1051 2.0643 -2.5928 26 1 -0.3633 -1.0207 -0.1194 27 1 -0.3633 0.6137 -0.8243 28 1 -0.3633 0.4069 0.9436 29 1 1.9033 -0.5277 4.4376 30 1 1.8412 -0.8373 -4.1964 31 1 3.4649 -0.1140 -4.1042 32 1 3.1412 -1.6776 -3.3177 33 1 4.3540 1.6013 -1.7725 34 1 4.2972 4.0580 -1.7319 35 1 2.2281 5.2589 -2.2244 36 1 -0.6710 4.8670 -2.9689 37 1 -2.0258 2.6782 -3.3701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870817189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = 38.684752 kcal Electronic energy + Delta-G solvation = -21457.827604 eV Core-core repulsion = 18394.228378 eV Total energy + Delta-G solvation = -3063.599226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29507 -39.24975 -36.90869 -34.87635 -33.86071 -31.29755 -30.87395 -29.13631 -28.56006 -26.69343 -25.17068 -23.20650 -21.97350 -21.68578 -20.66779 -19.16943 -17.46686 -16.88960 -16.42414 -15.81867 -15.62198 -14.95041 -14.89133 -14.34817 -14.24415 -13.70306 -13.23848 -13.11646 -12.90739 -12.54852 -12.44889 -12.28705 -12.16182 -11.64425 -11.56721 -11.51816 -11.10657 -10.94548 -10.60385 -10.27701 -9.68536 -9.59131 -9.16274 -8.79340 -8.58167 -8.50728 -8.10969 -7.52474 -6.07291 -4.07504 1.17656 1.78050 2.77357 3.20074 3.24052 3.36861 3.38909 3.41791 3.43814 3.99786 4.38551 4.81450 5.00757 5.12428 5.23225 5.24079 5.35625 5.52275 5.63075 5.66467 5.70416 5.88381 6.00013 6.04635 6.08585 6.14535 6.37433 6.44034 6.58268 6.62705 6.74010 6.79095 6.83877 6.93106 7.12845 7.23514 7.55228 7.56914 7.97714 8.50047 8.92355 9.03751 9.51573 11.05461 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.008486 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.111623 B = 3298.734398 C = 3841.091508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.001 3.999 3 H 0.049 0.951 4 C -0.504 4.504 5 H 0.085 0.915 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.881 3.119 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.262 1.262 12 C 0.536 3.464 13 O -0.527 6.527 14 N -0.594 5.594 15 C 0.087 3.913 16 C 0.138 3.862 17 C -0.094 4.094 18 C -0.136 4.136 19 C -0.074 4.074 20 C -0.105 4.105 21 C -0.207 4.207 22 C 0.051 3.949 23 N -0.588 5.588 24 H 0.415 0.585 25 C 0.103 3.897 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.265 0.735 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 10.959 -15.761 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.067 0.933 4 C -0.543 4.543 5 H 0.103 0.897 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.710 3.290 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.187 1.187 12 C 0.328 3.672 13 O -0.400 6.400 14 N -0.327 5.327 15 C -0.055 4.055 16 C 0.045 3.955 17 C -0.115 4.115 18 C -0.156 4.156 19 C -0.093 4.093 20 C -0.110 4.110 21 C -0.232 4.232 22 C -0.076 4.076 23 N -0.190 5.190 24 H 0.252 0.748 25 C -0.006 4.006 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.399 10.105 -15.571 18.871 hybrid contribution -0.813 0.376 0.230 0.925 sum -4.212 10.481 -15.341 19.051 Atomic orbital electron populations 1.22085 0.97202 1.00808 0.99793 1.19286 0.93199 0.97572 0.91969 0.93318 1.20800 1.32471 1.13594 0.87389 0.89702 1.24924 0.95704 0.96529 0.95651 1.69874 1.45351 1.40122 0.97877 0.86944 0.80605 0.83953 0.77459 1.20581 1.22138 1.18707 1.21563 0.74798 0.87567 0.83267 1.90580 1.51883 1.14897 1.82682 1.45663 1.71028 1.03635 1.12416 1.21590 0.99531 0.98604 0.85743 1.16513 0.90983 0.82496 1.05522 1.21115 0.97405 0.94081 0.98879 1.20516 0.98289 0.93518 1.03264 1.20276 0.91026 0.99323 0.98637 1.19122 0.94648 0.91356 1.05900 1.21612 0.92105 0.97926 1.11604 1.21793 0.96360 0.85953 1.03502 1.41851 1.07749 1.08774 1.60667 0.74764 1.18471 0.85856 0.93582 1.02724 0.92586 0.95137 0.92890 0.92498 0.93761 0.91797 0.90040 0.85229 0.85624 0.86015 0.83732 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.67 37.16 0.32 -2.85 16 2 C 0.00 0.03 1.78 -92.92 -0.17 -0.13 16 3 H 0.05 1.22 5.68 -51.93 -0.30 0.92 16 4 C -0.50 -14.95 8.90 -34.44 -0.31 -15.26 16 5 H 0.08 2.83 7.49 -52.49 -0.39 2.43 16 6 C 0.07 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -27.98 13.96 55.43 0.77 -27.20 16 8 Si 0.88 22.22 24.42 -169.99 -4.15 18.07 16 9 H -0.28 -6.82 6.82 56.52 0.39 -6.44 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 12 C 0.54 12.29 6.63 -10.99 -0.07 12.22 16 13 O -0.53 -13.68 15.59 5.55 0.09 -13.60 16 14 N -0.59 -10.82 2.91 -120.70 -0.35 -11.17 16 15 C 0.09 1.28 10.51 59.85 0.63 1.91 16 16 C 0.14 2.34 3.38 -83.53 -0.28 2.06 16 17 C -0.09 -1.48 9.76 -39.34 -0.38 -1.86 16 18 C -0.14 -1.85 9.97 -39.97 -0.40 -2.24 16 19 C -0.07 -0.99 10.05 -39.59 -0.40 -1.39 16 20 C -0.11 -1.55 6.37 -105.15 -0.67 -2.22 16 21 C -0.21 -2.52 11.08 -37.67 -0.42 -2.94 16 22 C 0.05 0.57 11.81 -16.75 -0.20 0.37 16 23 N -0.59 -7.90 4.72 -10.55 -0.05 -7.95 16 24 H 0.42 5.17 8.67 -40.82 -0.35 4.82 16 25 C 0.10 1.63 6.78 -83.80 -0.57 1.06 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.03 0.58 5.87 -51.93 -0.31 0.27 16 28 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 29 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.08 1.29 7.24 -51.93 -0.38 0.91 16 33 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -35.07 304.32 -6.57 -41.63 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.45 Total: 4.81 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -3.01 Total: -9.19 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.37 Total: -46.32 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.15 Total: 18.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.07 -6.57 -41.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870817189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.319 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds