Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46975 * 2 1 4 4 C 1.50701 * 109.46908 * 119.99952 * 2 1 3 5 5 H 1.07998 * 120.00389 * 120.00258 * 4 2 1 6 6 C 1.37876 * 119.99788 * 299.99712 * 4 2 1 7 7 N 1.31513 * 120.00133 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00106 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47177 * 90.00117 * 8 6 4 10 10 H 1.48505 * 109.47043 * 209.99888 * 8 6 4 11 11 H 1.48500 * 109.47123 * 329.99547 * 8 6 4 12 12 C 1.50706 * 109.47229 * 239.99763 * 2 1 3 13 13 O 1.21293 * 119.99651 * 274.36378 * 12 2 1 14 14 N 1.34767 * 119.99993 * 94.35868 * 12 2 1 15 15 C 1.46502 * 120.00149 * 185.11694 * 14 12 2 16 16 C 1.40021 * 119.99985 * 5.11861 * 14 12 2 17 17 C 1.38400 * 120.17435 * 91.89535 * 16 14 12 18 18 C 1.38719 * 120.57908 * 179.71842 * 17 16 14 19 19 C 1.36659 * 120.59502 * 0.55368 * 18 17 16 20 20 C 1.39737 * 119.89518 * 359.72557 * 19 18 17 21 21 C 1.46486 * 133.98224 * 179.97438 * 20 19 18 22 22 C 1.34250 * 107.00742 * 180.02562 * 21 20 19 23 23 N 1.36770 * 109.91845 * 0.02562 * 22 21 20 24 24 H 0.96992 * 125.08321 * 180.02562 * 23 22 21 25 25 C 1.37784 * 109.84950 * 0.02562 * 23 22 21 26 26 H 1.08999 * 109.46939 * 173.32991 * 1 2 3 27 27 H 1.09002 * 109.46729 * 53.33370 * 1 2 3 28 28 H 1.08994 * 109.47251 * 293.32930 * 1 2 3 29 29 H 0.96998 * 120.00796 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47338 * 94.07093 * 15 14 12 31 31 H 1.08993 * 109.47212 * 214.07148 * 15 14 12 32 32 H 1.09000 * 109.46585 * 334.07360 * 15 14 12 33 33 H 1.08000 * 119.70612 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.70269 * 180.28302 * 18 17 16 35 35 H 1.07991 * 120.05107 * 179.74292 * 19 18 17 36 36 H 1.08000 * 126.49212 * 0.02562 * 21 20 19 37 37 H 1.08005 * 125.04533 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6248 1.2792 2.6540 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9953 3.9067 11 1 0.8472 2.1766 1.4919 12 6 2.0324 -0.7105 -1.2305 13 8 2.1592 -1.9167 -1.2249 14 7 2.3407 -0.0056 -2.3369 15 6 2.7214 -0.7033 -3.5676 16 6 2.2971 1.3937 -2.3103 17 6 3.4333 2.1193 -1.9970 18 6 3.4011 3.5059 -1.9738 19 6 2.2443 4.1794 -2.2490 20 6 1.0825 3.4691 -2.5625 21 6 -0.2888 3.8593 -2.8992 22 6 -0.9801 2.7269 -3.1045 23 7 -0.1639 1.6440 -2.9263 24 1 -0.4375 0.7182 -3.0206 25 6 1.1051 2.0643 -2.5928 26 1 -0.3633 -1.0207 -0.1194 27 1 -0.3633 0.6137 -0.8243 28 1 -0.3633 0.4069 0.9436 29 1 1.9033 -0.5277 4.4376 30 1 1.8412 -0.8373 -4.1964 31 1 3.4649 -0.1140 -4.1042 32 1 3.1412 -1.6776 -3.3177 33 1 4.3540 1.6013 -1.7725 34 1 4.2972 4.0580 -1.7319 35 1 2.2281 5.2589 -2.2244 36 1 -0.6710 4.8670 -2.9689 37 1 -2.0258 2.6782 -3.3701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870817189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = 15.050855 kcal Electronic energy + Delta-G solvation = -21458.852447 eV Core-core repulsion = 18394.228378 eV Total energy + Delta-G solvation = -3064.624068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38730 -40.82572 -38.12434 -36.26963 -35.91964 -33.39598 -31.99029 -30.20024 -29.57899 -28.11478 -27.28657 -24.68112 -23.49384 -22.75429 -21.72270 -20.49460 -18.97896 -18.70378 -17.99677 -17.37114 -16.95981 -16.47485 -16.26825 -15.73140 -15.35074 -15.07350 -14.98875 -14.72757 -14.21555 -14.09731 -13.84013 -13.64246 -13.49777 -13.24088 -12.95178 -12.68674 -12.61040 -12.51908 -12.29613 -12.10822 -11.60380 -11.33845 -10.99936 -10.78701 -10.34987 -9.97648 -9.15603 -8.55800 -8.36132 -6.43515 0.10001 0.70279 1.24597 1.32340 1.43477 1.60406 1.85896 1.98732 2.25805 2.29494 2.92342 2.97148 3.67518 3.89439 4.12386 4.16776 4.29214 4.31862 4.38341 4.42947 4.50035 4.58663 4.62177 4.73281 4.77416 4.83189 4.93907 5.01793 5.12712 5.24795 5.42053 5.44014 5.53991 5.65563 5.81524 5.86736 6.09382 6.19690 6.48681 6.64150 6.66767 7.14066 7.26324 8.81275 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.008486 C = 0.007288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.111623 B = 3298.734398 C = 3841.091508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 H 0.052 0.948 4 C -0.520 4.520 5 H 0.026 0.974 6 C 0.018 3.982 7 N -0.944 5.944 8 Si 0.952 3.048 9 H -0.261 1.261 10 H -0.289 1.289 11 H -0.244 1.244 12 C 0.534 3.466 13 O -0.573 6.573 14 N -0.579 5.579 15 C 0.084 3.916 16 C 0.105 3.895 17 C -0.110 4.110 18 C -0.140 4.140 19 C -0.070 4.070 20 C -0.121 4.121 21 C -0.216 4.216 22 C 0.059 3.941 23 N -0.594 5.594 24 H 0.417 0.583 25 C 0.081 3.919 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.270 0.730 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.172 0.828 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 14.545 -17.432 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 H 0.070 0.930 4 C -0.558 4.558 5 H 0.044 0.956 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.777 3.223 9 H -0.187 1.187 10 H -0.216 1.216 11 H -0.167 1.167 12 C 0.326 3.674 13 O -0.451 6.451 14 N -0.309 5.309 15 C -0.056 4.056 16 C 0.012 3.988 17 C -0.131 4.131 18 C -0.160 4.160 19 C -0.088 4.088 20 C -0.127 4.127 21 C -0.240 4.240 22 C -0.066 4.066 23 N -0.196 5.196 24 H 0.255 0.745 25 C -0.028 4.028 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.189 0.811 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.569 13.728 -17.300 22.776 hybrid contribution -0.063 -0.732 0.665 0.991 sum -5.632 12.996 -16.635 21.848 Atomic orbital electron populations 1.21965 0.95159 1.01195 1.00874 1.19104 0.94796 0.96860 0.90832 0.93008 1.20930 1.32235 1.12404 0.90254 0.95557 1.25866 0.97127 1.00234 0.94785 1.70036 1.47125 1.42425 0.98715 0.85787 0.79007 0.79388 0.78071 1.18672 1.21632 1.16736 1.21234 0.74990 0.86951 0.84242 1.90555 1.54271 1.16624 1.83676 1.45442 1.69024 1.04580 1.11896 1.21796 1.01221 0.97931 0.84696 1.16745 0.92426 0.81337 1.08246 1.21264 0.97021 0.95373 0.99396 1.20810 0.99712 0.92590 1.02862 1.20696 0.90353 1.00936 0.96845 1.19615 0.96270 0.91014 1.05782 1.22003 0.90865 0.99582 1.11580 1.22516 0.97737 0.84854 1.01530 1.42021 1.07361 1.09593 1.60649 0.74529 1.18547 0.86249 0.94342 1.03665 0.93303 0.91491 0.93468 0.92078 0.91500 0.89146 0.91741 0.85899 0.83065 0.82937 0.81081 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.67 71.98 0.62 -5.24 16 2 C 0.01 0.29 1.78 -12.28 -0.02 0.26 16 3 H 0.05 2.56 5.68 -2.39 -0.01 2.54 16 4 C -0.52 -32.21 8.90 25.60 0.23 -31.98 16 5 H 0.03 1.88 7.49 -2.91 -0.02 1.86 16 6 C 0.02 1.06 5.45 84.65 0.46 1.53 16 7 N -0.94 -61.07 13.96 21.45 0.30 -60.77 16 8 Si 0.95 45.46 24.42 68.60 1.68 47.13 16 9 H -0.26 -11.68 6.82 99.48 0.68 -11.00 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.24 -10.82 6.53 99.48 0.65 -10.17 16 12 C 0.53 25.17 6.63 87.66 0.58 25.75 16 13 O -0.57 -31.36 15.59 -3.07 -0.05 -31.41 16 14 N -0.58 -21.05 2.91 -654.18 -1.90 -22.95 16 15 C 0.08 2.45 10.51 127.77 1.34 3.79 16 16 C 0.10 3.44 3.38 38.21 0.13 3.57 16 17 C -0.11 -3.36 9.76 22.42 0.22 -3.14 16 18 C -0.14 -3.45 9.97 22.02 0.22 -3.23 16 19 C -0.07 -1.62 10.05 22.26 0.22 -1.40 16 20 C -0.12 -3.13 6.37 -20.21 -0.13 -3.26 16 21 C -0.22 -4.24 11.08 23.51 0.26 -3.98 16 22 C 0.06 1.05 11.81 83.01 0.98 2.03 16 23 N -0.59 -13.99 4.72 -187.28 -0.88 -14.88 16 24 H 0.42 9.23 8.67 -92.71 -0.80 8.42 16 25 C 0.08 2.37 6.78 39.11 0.27 2.63 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 27 H 0.07 2.38 5.87 -2.39 -0.01 2.37 16 28 H 0.05 2.10 3.22 -2.39 -0.01 2.09 16 29 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 32 H 0.06 2.10 7.24 -2.39 -0.02 2.08 16 33 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.15 2.50 8.06 -2.92 -0.02 2.48 16 36 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -80.53 304.32 4.73 -75.80 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.21 Total: 19.76 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 5.38 Total: -12.67 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -2.49 Total: -98.60 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.05 Total: -31.41 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.68 Total: 47.13 kcal Total: -80.53 4.73 -75.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870817189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.846 kcal (2) G-P(sol) polarization free energy of solvation -80.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds