Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21293 * 119.99756 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.52996 * 109.47159 * 179.72352 * 5 3 2 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 3 8 8 H 1.07991 * 119.99776 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99589 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99815 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00497 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46850 * 89.99901 * 11 9 7 13 13 H 1.48497 * 109.47216 * 209.99802 * 11 9 7 14 14 H 1.48501 * 109.46793 * 330.00249 * 11 9 7 15 15 C 1.40025 * 119.99544 * 180.02562 * 2 1 3 16 16 C 1.38395 * 120.17031 * 269.99714 * 15 2 1 17 17 C 1.38728 * 120.57683 * 180.02562 * 16 15 2 18 18 C 1.36644 * 120.59422 * 359.97438 * 17 16 15 19 19 C 1.39741 * 119.90195 * 359.97438 * 18 17 16 20 20 C 1.46478 * 133.99150 * 179.97438 * 19 18 17 21 21 C 1.34249 * 107.01470 * 180.02562 * 20 19 18 22 22 N 1.36776 * 109.91021 * 359.97438 * 21 20 19 23 23 H 0.97002 * 125.07483 * 180.02562 * 22 21 20 24 24 C 1.37775 * 109.84801 * 359.74257 * 22 21 20 25 25 H 1.09001 * 109.47418 * 89.99102 * 1 2 3 26 26 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 27 27 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 29 29 H 1.09000 * 109.47154 * 59.71645 * 5 3 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 6 5 3 31 31 H 1.09000 * 109.47234 * 59.99288 * 6 5 3 32 32 H 0.96998 * 120.00586 * 180.02562 * 10 9 7 33 33 H 1.08002 * 119.70852 * 0.02562 * 16 15 2 34 34 H 1.07997 * 119.69814 * 180.02562 * 17 16 15 35 35 H 1.08009 * 120.05109 * 179.97438 * 18 17 16 36 36 H 1.08007 * 126.49028 * 0.03869 * 20 19 18 37 37 H 1.08004 * 125.04907 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3519 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3798 3.6351 0.0120 7 6 1.6263 4.9403 0.0178 8 1 0.5464 4.9403 0.0171 9 6 2.3159 6.1342 0.0240 10 7 1.6584 7.2732 0.0295 11 14 4.1839 6.1341 0.0259 12 1 4.6802 6.1405 -1.3736 13 1 4.6782 7.3434 0.7319 14 1 4.6780 4.9184 0.7209 15 6 2.1651 -1.2127 -0.0005 16 6 2.5129 -1.8156 1.1957 17 6 3.2068 -3.0168 1.2050 18 6 3.5586 -3.6258 0.0334 19 6 3.2179 -3.0373 -1.1874 20 6 3.4310 -3.4056 -2.5890 21 6 2.8733 -2.4410 -3.3378 22 7 2.3202 -1.4856 -2.5303 23 1 1.8600 -0.6906 -2.8419 24 6 2.5087 -1.8243 -1.2082 25 1 -0.3634 0.0002 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 0.7588 2.5344 -0.8833 29 1 0.7589 2.5257 0.8966 30 1 3.0065 3.5731 0.9017 31 1 3.0065 3.5817 -0.8782 32 1 2.1433 8.1133 0.0335 33 1 2.2416 -1.3468 2.1300 34 1 3.4707 -3.4750 2.1466 35 1 4.0993 -4.5607 0.0509 36 1 3.9402 -4.2865 -2.9513 37 1 2.8629 -2.4221 -4.4176 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870817687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = 24.665305 kcal Electronic energy + Delta-G solvation = -20251.092396 eV Core-core repulsion = 17186.885241 eV Total energy + Delta-G solvation = -3064.207155 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40782 -39.53492 -37.00235 -35.27232 -33.57782 -31.72290 -30.93160 -29.35696 -28.75877 -26.72008 -26.05121 -23.03593 -21.88694 -21.35299 -20.46816 -19.07895 -17.93484 -17.18100 -16.68305 -15.99688 -15.83474 -15.43072 -14.81862 -14.39285 -14.19916 -14.07645 -13.44605 -13.27526 -13.07780 -12.71327 -12.60353 -12.47204 -12.39795 -11.79711 -11.65996 -11.41501 -11.34468 -10.99972 -10.19521 -10.09018 -9.82187 -9.71604 -9.29707 -9.20667 -8.79816 -8.53818 -8.27687 -7.73785 -6.06232 -4.05330 1.01275 1.60898 2.62437 2.95819 3.06031 3.15715 3.35611 3.42548 3.53930 3.82354 4.48329 4.66378 4.86875 4.99107 5.05038 5.17144 5.23475 5.29191 5.31510 5.42456 5.50831 5.63535 5.65161 5.84827 5.88527 5.97721 6.02170 6.38202 6.44112 6.57827 6.59832 6.67491 6.82445 7.18905 7.31772 7.38546 7.43214 7.47595 7.75109 8.45035 8.56395 8.96170 9.56832 11.06480 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.004329 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.783890 B = 6466.152779 C = 6576.776958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.592 5.592 3 C 0.509 3.491 4 O -0.522 6.522 5 C -0.118 4.118 6 C 0.001 3.999 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.903 5.903 11 Si 0.876 3.124 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.261 1.261 15 C 0.138 3.862 16 C -0.094 4.094 17 C -0.139 4.139 18 C -0.073 4.073 19 C -0.106 4.106 20 C -0.209 4.209 21 C 0.052 3.948 22 N -0.589 5.589 23 H 0.416 0.584 24 C 0.104 3.896 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.024 0.976 31 H 0.018 0.982 32 H 0.264 0.736 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -23.301 -3.043 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.325 5.325 3 C 0.300 3.700 4 O -0.396 6.396 5 C -0.157 4.157 6 C -0.037 4.037 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.131 4.131 10 N -0.541 5.541 11 Si 0.703 3.297 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.185 1.185 15 C 0.045 3.955 16 C -0.114 4.114 17 C -0.158 4.158 18 C -0.092 4.092 19 C -0.111 4.111 20 C -0.234 4.234 21 C -0.074 4.074 22 N -0.191 5.191 23 H 0.253 0.747 24 C -0.006 4.006 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.106 -22.951 -3.115 23.188 hybrid contribution 0.626 0.543 -0.241 0.863 sum -0.479 -22.408 -3.356 22.663 Atomic orbital electron populations 1.21855 0.78623 1.03690 1.01818 1.45685 1.06758 1.03836 1.76266 1.21800 0.88503 0.85248 0.74436 1.90689 1.14387 1.87092 1.47434 1.21707 1.00229 0.90532 1.03282 1.19390 0.94428 0.92172 0.97688 1.21081 0.94937 0.88788 1.51526 0.90898 1.24955 0.98448 0.95438 0.94260 1.69906 1.35859 0.97437 1.50941 0.86816 0.86230 0.77899 0.78758 1.20261 1.21335 1.18532 1.16588 1.00869 0.87992 0.90024 1.21020 0.98431 0.95561 0.96412 1.20500 1.01259 0.96047 0.98026 1.20277 0.99083 0.99402 0.90437 1.19136 1.02675 0.95386 0.93920 1.21636 1.09212 1.01976 0.90573 1.21837 0.99146 0.89972 0.96489 1.41797 1.50559 1.22568 1.04133 0.74749 1.18481 1.01368 0.96213 0.84511 0.92930 0.91186 0.89770 0.89643 0.89321 0.95763 0.96385 0.92671 0.85597 0.85710 0.85970 0.83620 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.24 59.85 0.61 1.50 16 2 N -0.59 -8.86 2.91 -120.69 -0.35 -9.21 16 3 C 0.51 9.69 7.64 -10.98 -0.08 9.61 16 4 O -0.52 -12.20 15.96 5.55 0.09 -12.12 16 5 C -0.12 -2.28 4.19 -27.88 -0.12 -2.40 16 6 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 7 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 10 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 11 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 14 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 15 C 0.14 2.08 4.48 -83.53 -0.37 1.71 16 16 C -0.09 -1.29 9.94 -39.34 -0.39 -1.68 16 17 C -0.14 -1.64 9.97 -39.98 -0.40 -2.04 16 18 C -0.07 -0.87 10.05 -39.60 -0.40 -1.27 16 19 C -0.11 -1.42 6.37 -105.16 -0.67 -2.09 16 20 C -0.21 -2.30 11.08 -37.67 -0.42 -2.72 16 21 C 0.05 0.53 11.82 -16.75 -0.20 0.33 16 22 N -0.59 -7.26 6.07 -10.55 -0.06 -7.32 16 23 H 0.42 4.62 8.96 -40.82 -0.37 4.25 16 24 C 0.10 1.51 7.20 -83.80 -0.60 0.90 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.08 0.87 6.43 -51.93 -0.33 0.53 16 28 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 29 H 0.09 1.58 7.40 -51.93 -0.38 1.19 16 30 H 0.02 0.64 7.15 -51.93 -0.37 0.27 16 31 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -35.83 316.92 -7.82 -43.65 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.81 Total: 0.82 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.56 Total: -11.51 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.36 Total: -43.64 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.83 -7.82 -43.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870817687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.317 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds