Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21293 * 119.99756 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.52996 * 109.47159 * 179.72352 * 5 3 2 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 3 8 8 H 1.07991 * 119.99776 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99589 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99815 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00497 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46850 * 89.99901 * 11 9 7 13 13 H 1.48497 * 109.47216 * 209.99802 * 11 9 7 14 14 H 1.48501 * 109.46793 * 330.00249 * 11 9 7 15 15 C 1.40025 * 119.99544 * 180.02562 * 2 1 3 16 16 C 1.38395 * 120.17031 * 269.99714 * 15 2 1 17 17 C 1.38728 * 120.57683 * 180.02562 * 16 15 2 18 18 C 1.36644 * 120.59422 * 359.97438 * 17 16 15 19 19 C 1.39741 * 119.90195 * 359.97438 * 18 17 16 20 20 C 1.46478 * 133.99150 * 179.97438 * 19 18 17 21 21 C 1.34249 * 107.01470 * 180.02562 * 20 19 18 22 22 N 1.36776 * 109.91021 * 359.97438 * 21 20 19 23 23 H 0.97002 * 125.07483 * 180.02562 * 22 21 20 24 24 C 1.37775 * 109.84801 * 359.74257 * 22 21 20 25 25 H 1.09001 * 109.47418 * 89.99102 * 1 2 3 26 26 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 27 27 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 29 29 H 1.09000 * 109.47154 * 59.71645 * 5 3 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 6 5 3 31 31 H 1.09000 * 109.47234 * 59.99288 * 6 5 3 32 32 H 0.96998 * 120.00586 * 180.02562 * 10 9 7 33 33 H 1.08002 * 119.70852 * 0.02562 * 16 15 2 34 34 H 1.07997 * 119.69814 * 180.02562 * 17 16 15 35 35 H 1.08009 * 120.05109 * 179.97438 * 18 17 16 36 36 H 1.08007 * 126.49028 * 0.03869 * 20 19 18 37 37 H 1.08004 * 125.04907 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3519 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3798 3.6351 0.0120 7 6 1.6263 4.9403 0.0178 8 1 0.5464 4.9403 0.0171 9 6 2.3159 6.1342 0.0240 10 7 1.6584 7.2732 0.0295 11 14 4.1839 6.1341 0.0259 12 1 4.6802 6.1405 -1.3736 13 1 4.6782 7.3434 0.7319 14 1 4.6780 4.9184 0.7209 15 6 2.1651 -1.2127 -0.0005 16 6 2.5129 -1.8156 1.1957 17 6 3.2068 -3.0168 1.2050 18 6 3.5586 -3.6258 0.0334 19 6 3.2179 -3.0373 -1.1874 20 6 3.4310 -3.4056 -2.5890 21 6 2.8733 -2.4410 -3.3378 22 7 2.3202 -1.4856 -2.5303 23 1 1.8600 -0.6906 -2.8419 24 6 2.5087 -1.8243 -1.2082 25 1 -0.3634 0.0002 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 0.7588 2.5344 -0.8833 29 1 0.7589 2.5257 0.8966 30 1 3.0065 3.5731 0.9017 31 1 3.0065 3.5817 -0.8782 32 1 2.1433 8.1133 0.0335 33 1 2.2416 -1.3468 2.1300 34 1 3.4707 -3.4750 2.1466 35 1 4.0993 -4.5607 0.0509 36 1 3.9402 -4.2865 -2.9513 37 1 2.8629 -2.4221 -4.4176 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870817687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = 1.866870 kcal Electronic energy + Delta-G solvation = -20252.081010 eV Core-core repulsion = 17186.885241 eV Total energy + Delta-G solvation = -3065.195769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35770 -40.85557 -38.05357 -36.45756 -35.62059 -33.48685 -32.14000 -30.34065 -29.67979 -28.22309 -27.41617 -24.38110 -22.89221 -22.72675 -21.57213 -20.39120 -19.27941 -18.85292 -17.87701 -17.40148 -16.96753 -16.62126 -16.26216 -15.82212 -15.33816 -15.31153 -14.90168 -14.57997 -14.52996 -13.96868 -13.86137 -13.58071 -13.52238 -13.28040 -12.96136 -12.67826 -12.58107 -12.28231 -12.11621 -12.00997 -11.82259 -11.43702 -10.90713 -10.81013 -10.58127 -9.98661 -9.21284 -8.63808 -8.34438 -6.37201 0.06463 0.65132 1.29294 1.32136 1.46958 1.51734 1.77833 1.92070 2.25296 2.31780 2.87305 3.01222 3.75389 3.83551 4.06804 4.08595 4.19174 4.29541 4.33124 4.38717 4.47030 4.60381 4.69594 4.77784 4.79331 4.93652 4.95222 5.06356 5.27758 5.37141 5.44236 5.52262 5.56416 5.65972 5.79471 5.86106 6.16209 6.22421 6.24062 6.59210 6.68808 7.14983 7.28400 8.81080 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.004329 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.783890 B = 6466.152779 C = 6576.776958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.576 5.576 3 C 0.513 3.487 4 O -0.575 6.575 5 C -0.109 4.109 6 C 0.006 3.994 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.018 3.982 10 N -0.941 5.941 11 Si 0.934 3.066 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.266 1.266 15 C 0.108 3.892 16 C -0.108 4.108 17 C -0.142 4.142 18 C -0.075 4.075 19 C -0.126 4.126 20 C -0.220 4.220 21 C 0.056 3.944 22 N -0.595 5.595 23 H 0.418 0.582 24 C 0.075 3.925 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.268 0.732 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 -25.415 -3.683 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.307 5.307 3 C 0.304 3.696 4 O -0.454 6.454 5 C -0.149 4.149 6 C -0.032 4.032 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.180 4.180 10 N -0.581 5.581 11 Si 0.758 3.242 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.190 1.190 15 C 0.015 3.985 16 C -0.129 4.129 17 C -0.161 4.161 18 C -0.093 4.093 19 C -0.132 4.132 20 C -0.245 4.245 21 C -0.070 4.070 22 N -0.197 5.197 23 H 0.255 0.745 24 C -0.034 4.034 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.189 0.811 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.897 -25.101 -3.761 25.397 hybrid contribution 0.458 1.109 -0.063 1.201 sum -0.438 -23.993 -3.824 24.300 Atomic orbital electron populations 1.22151 0.76106 1.04998 1.03404 1.45529 1.08194 1.02867 1.74133 1.21558 0.87704 0.86168 0.74184 1.90661 1.16383 1.87890 1.50443 1.21522 0.99109 0.89099 1.05140 1.19223 0.94953 0.92837 0.96179 1.21377 0.94420 0.90341 1.50405 0.92766 1.25728 1.02711 0.95290 0.94264 1.70006 1.37619 0.98130 1.52367 0.85902 0.81232 0.77903 0.79114 1.19402 1.20125 1.19033 1.16847 1.02516 0.88066 0.91024 1.21227 0.98939 0.96547 0.96153 1.20825 1.00480 0.95387 0.99421 1.20677 0.98472 1.00217 0.89938 1.19642 1.02650 0.95311 0.95586 1.22027 1.09723 1.03196 0.89542 1.22523 0.97562 0.88817 0.98073 1.41954 1.50796 1.23128 1.03799 0.74509 1.18694 1.02397 0.97151 0.85148 0.91170 0.89298 0.89094 0.87658 0.87577 0.97457 0.97592 0.92302 0.85416 0.83012 0.83165 0.81129 0.77593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 10.24 127.77 1.31 2.78 16 2 N -0.58 -16.81 2.91 -654.15 -1.90 -18.72 16 3 C 0.51 19.42 7.64 87.66 0.67 20.09 16 4 O -0.58 -27.32 15.96 -3.07 -0.05 -27.36 16 5 C -0.11 -4.17 4.19 29.85 0.13 -4.05 16 6 C 0.01 0.31 3.33 29.85 0.10 0.40 16 7 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 8 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 9 C 0.02 1.08 5.47 84.65 0.46 1.54 16 10 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 11 Si 0.93 47.12 27.47 68.60 1.88 49.00 16 12 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.27 -13.53 6.54 99.48 0.65 -12.88 16 15 C 0.11 3.20 4.48 38.21 0.17 3.37 16 16 C -0.11 -2.91 9.94 22.42 0.22 -2.69 16 17 C -0.14 -3.13 9.97 22.01 0.22 -2.91 16 18 C -0.07 -1.63 10.05 22.26 0.22 -1.41 16 19 C -0.13 -3.20 6.37 -20.21 -0.13 -3.32 16 20 C -0.22 -4.35 11.08 23.51 0.26 -4.09 16 21 C 0.06 1.01 11.82 83.01 0.98 1.99 16 22 N -0.59 -13.91 6.07 -187.28 -1.14 -15.05 16 23 H 0.42 8.88 8.96 -92.71 -0.83 8.05 16 24 C 0.08 2.13 7.20 39.11 0.28 2.41 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.45 8.05 -2.39 -0.02 1.44 16 27 H 0.09 1.69 6.43 -2.39 -0.02 1.67 16 28 H 0.11 3.58 8.11 -2.38 -0.02 3.56 16 29 H 0.11 3.66 7.40 -2.39 -0.02 3.64 16 30 H 0.01 0.38 7.15 -2.38 -0.02 0.36 16 31 H 0.01 0.30 7.53 -2.39 -0.02 0.28 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -78.46 316.92 4.43 -74.02 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.20 Total: 12.35 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.14 Total: -15.93 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -2.74 Total: -92.08 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.36 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.88 Total: 49.00 kcal Total: -78.46 4.43 -74.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870817687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.890 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds