Wall clock time and date at job start Mon Mar 30 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08988 * 109.47094 * 2 1 4 4 C 1.47205 * 109.47025 * 239.99644 * 2 1 3 5 5 N 2.60798 * 109.46959 * 239.99653 * 2 1 3 6 6 N 1.46499 * 109.46911 * 120.00043 * 2 1 3 7 7 C 1.46503 * 120.00005 * 60.00113 * 6 2 1 8 8 C 1.34774 * 120.00005 * 239.99917 * 6 2 1 9 9 O 1.21278 * 119.99526 * 359.97438 * 8 6 2 10 10 C 1.50695 * 120.00256 * 180.02562 * 8 6 2 11 11 C 1.50701 * 109.47556 * 179.97438 * 10 8 6 12 12 C 1.37630 * 120.12796 * 265.00188 * 11 10 8 13 13 C 1.38619 * 120.24694 * 180.29070 * 12 11 10 14 14 C 1.38655 * 120.49866 * 359.44683 * 13 12 11 15 15 C 1.37604 * 120.25111 * 0.55480 * 14 13 12 16 16 C 1.40697 * 120.12236 * 85.01918 * 11 10 8 17 17 C 1.41390 * 120.25030 * 359.96070 * 16 11 10 18 18 H 1.08004 * 119.99865 * 334.08548 * 17 16 11 19 19 C 1.39940 * 120.00399 * 154.08926 * 17 16 11 20 20 N 1.30822 * 119.99912 * 343.61139 * 19 17 16 21 21 Si 1.86803 * 120.00192 * 163.62242 * 19 17 16 22 22 H 1.48494 * 109.47012 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47407 * 119.99663 * 21 19 17 24 24 H 1.48508 * 109.46756 * 239.99409 * 21 19 17 25 25 H 1.08994 * 109.47230 * 60.00046 * 1 2 3 26 26 H 1.09005 * 109.47248 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47449 * 299.99956 * 1 2 3 28 28 H 1.09002 * 109.47078 * 269.99596 * 7 6 2 29 29 H 1.09001 * 109.47637 * 29.99559 * 7 6 2 30 30 H 1.09001 * 109.47363 * 150.00360 * 7 6 2 31 31 H 1.09003 * 109.47324 * 59.99832 * 10 8 6 32 32 H 1.09000 * 109.47440 * 299.99911 * 10 8 6 33 33 H 1.07995 * 119.88141 * 0.02562 * 12 11 10 34 34 H 1.07999 * 119.74930 * 179.69896 * 13 12 11 35 35 H 1.08004 * 119.87487 * 180.29445 * 14 13 12 36 36 H 1.07992 * 120.12974 * 179.74704 * 15 14 13 37 37 H 0.97001 * 120.00439 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2296 -2.1293 6 7 2.0183 -0.6906 1.1962 7 6 1.6644 -2.0932 1.4280 8 6 2.7931 -0.0357 2.0833 9 8 3.0865 1.1253 1.8911 10 6 3.2959 -0.7462 3.3135 11 6 4.1336 0.2008 4.1336 12 6 5.5018 0.2177 3.9860 13 6 6.2752 1.0835 4.7435 14 6 5.6807 1.9493 5.6487 15 6 4.3145 1.9497 5.8128 16 6 3.5198 1.0709 5.0533 17 6 2.1150 1.0628 5.2131 18 1 1.4810 0.7387 4.4011 19 6 1.5460 1.4748 6.4234 20 7 2.2860 1.5591 7.4989 21 14 -0.2703 1.9041 6.5034 22 1 -0.8800 1.7282 5.1609 23 1 -0.9479 1.0100 7.4763 24 1 -0.4265 3.3160 6.9366 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7375 -2.1444 1.9993 29 1 1.5294 -2.5970 0.4708 30 1 2.4627 -2.5820 1.9864 31 1 3.9016 -1.6024 3.0166 32 1 2.4484 -1.0891 3.9070 33 1 5.9751 -0.4491 3.2806 34 1 7.3487 1.0866 4.6247 35 1 6.2926 2.6230 6.2302 36 1 3.8538 2.6220 6.5214 37 1 1.8917 1.8451 8.3378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876450020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:37 Heat of formation + Delta-G solvation = -5.417855 kcal Electronic energy + Delta-G solvation = -20530.479203 eV Core-core repulsion = 17464.967545 eV Total energy + Delta-G solvation = -3065.511658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16863 -39.31347 -38.09739 -36.37869 -35.44412 -33.73408 -32.19269 -31.27887 -28.46424 -27.78603 -26.85221 -25.07942 -22.79119 -22.04641 -20.32731 -18.99836 -18.77061 -18.19810 -17.27816 -16.67183 -16.36662 -16.15051 -15.42513 -15.34574 -15.05438 -14.59610 -14.34227 -14.24220 -13.99607 -13.72598 -13.54837 -13.32707 -13.21948 -13.05759 -12.86057 -12.81767 -12.68393 -12.60482 -12.44001 -12.23142 -12.04418 -11.27406 -11.14995 -10.97754 -10.74607 -9.84611 -9.18429 -9.12334 -8.53900 -6.23315 1.00341 1.13866 1.33733 1.43221 1.56178 1.58625 1.60880 1.75411 2.25746 2.32632 2.81490 2.84264 3.70247 3.96932 4.06155 4.24009 4.26264 4.41870 4.45528 4.60148 4.73688 4.75499 4.77419 4.83564 4.92186 4.97355 5.11905 5.25468 5.26504 5.41241 5.49751 5.59372 5.82005 6.07690 6.20325 6.25930 6.31281 6.38545 6.46468 6.78856 7.04862 7.16478 7.28477 8.42821 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.006641 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.993388 B = 4215.300602 C = 5515.957298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.128 0.872 4 C 0.226 3.774 5 N -0.461 5.461 6 N -0.615 5.615 7 C 0.069 3.931 8 C 0.524 3.476 9 O -0.562 6.562 10 C -0.064 4.064 11 C -0.190 4.190 12 C -0.092 4.092 13 C -0.246 4.246 14 C -0.118 4.118 15 C -0.193 4.193 16 C 0.098 3.902 17 C -0.477 4.477 18 H 0.079 0.921 19 C 0.035 3.965 20 N -0.828 5.828 21 Si 0.971 3.029 22 H -0.253 1.253 23 H -0.264 1.264 24 H -0.275 1.275 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 -6.399 -8.027 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.124 3.876 3 H 0.146 0.854 4 C -0.093 4.093 5 N -0.139 5.139 6 N -0.351 5.351 7 C -0.073 4.073 8 C 0.314 3.686 9 O -0.439 6.439 10 C -0.104 4.104 11 C -0.192 4.192 12 C -0.110 4.110 13 C -0.265 4.265 14 C -0.136 4.136 15 C -0.213 4.213 16 C 0.096 3.904 17 C -0.506 4.506 18 H 0.097 0.903 19 C -0.179 4.179 20 N -0.455 5.455 21 Si 0.793 3.207 22 H -0.176 1.176 23 H -0.189 1.189 24 H -0.200 1.200 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.170 -6.558 -9.257 12.914 hybrid contribution -0.423 0.725 0.769 1.138 sum -6.592 -5.832 -8.488 12.228 Atomic orbital electron populations 1.22095 0.88849 1.04868 1.04854 1.18575 0.97023 0.96122 0.75895 0.85433 1.29818 0.92188 0.92916 0.94405 1.81194 1.09827 1.10174 1.12656 1.48030 1.51780 1.14322 1.20974 1.22103 1.03134 0.78866 1.03171 1.21262 0.76390 0.86617 0.84321 1.90673 1.57955 1.18715 1.76569 1.20303 1.00637 0.97278 0.92160 1.19551 0.93169 1.02098 1.04337 1.20724 0.93522 0.98538 0.98237 1.20683 0.98576 1.03513 1.03694 1.20935 0.94860 0.99151 0.98647 1.21306 0.93395 1.02234 1.04354 1.17734 0.93877 0.88775 0.90025 1.19676 0.91966 1.40136 0.98870 0.90306 1.26701 1.04555 0.92167 0.94464 1.69898 1.39837 1.34974 1.00770 0.85312 0.77178 0.78508 0.79714 1.17609 1.18896 1.19982 0.88874 0.89846 0.90161 0.89843 0.90356 0.89426 0.87184 0.87661 0.86887 0.87087 0.87976 0.88587 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.15 71.98 0.66 -1.54 16 2 C 0.23 5.05 3.10 43.19 0.13 5.19 16 3 H 0.13 3.23 6.90 -2.39 -0.02 3.21 16 4 C 0.23 5.36 13.90 89.44 1.24 6.61 16 5 N -0.46 -12.90 18.54 20.01 0.37 -12.53 16 6 N -0.62 -15.29 2.74 -832.82 -2.28 -17.57 16 7 C 0.07 1.15 9.29 127.77 1.19 2.34 16 8 C 0.52 18.26 7.31 87.66 0.64 18.90 16 9 O -0.56 -24.89 15.36 -3.02 -0.05 -24.93 16 10 C -0.06 -2.27 3.73 29.10 0.11 -2.16 16 11 C -0.19 -8.74 4.43 -19.41 -0.09 -8.83 16 12 C -0.09 -4.06 9.66 22.22 0.21 -3.85 16 13 C -0.25 -11.08 10.05 22.46 0.23 -10.86 16 14 C -0.12 -5.73 10.02 22.22 0.22 -5.51 16 15 C -0.19 -10.47 8.68 22.73 0.20 -10.28 16 16 C 0.10 5.18 5.56 -21.29 -0.12 5.06 16 17 C -0.48 -24.30 8.14 23.46 0.19 -24.11 16 18 H 0.08 3.81 6.68 -2.91 -0.02 3.79 16 19 C 0.04 1.73 5.16 85.26 0.44 2.17 16 20 N -0.83 -42.70 10.97 21.82 0.24 -42.46 16 21 Si 0.97 36.90 29.59 68.60 2.03 38.93 16 22 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 0.97 7.67 -2.38 -0.02 0.96 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.10 7.27 -2.39 -0.02 1.09 16 30 H 0.09 1.36 6.44 -2.39 -0.02 1.35 16 31 H 0.11 3.09 7.31 -2.39 -0.02 3.07 16 32 H 0.11 3.59 7.03 -2.39 -0.02 3.57 16 33 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.10 5.46 6.22 -2.91 -0.02 5.44 16 37 H 0.28 13.33 8.30 -92.71 -0.77 12.56 16 Total: -1.00 -67.61 319.12 6.65 -60.95 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 1.08 Total: 24.49 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 5.26 Total: -26.88 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -1.67 Total: -72.56 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -67.61 6.65 -60.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876450020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.536 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds