Wall clock time and date at job start Mon Mar 30 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47710 * 63.40558 * 3 2 1 5 5 C 1.36938 * 119.99704 * 263.91693 * 4 3 2 6 6 H 1.07998 * 119.99609 * 199.39190 * 5 4 3 7 7 C 1.38809 * 120.00117 * 19.39054 * 5 4 3 8 8 N 1.31612 * 120.00295 * 22.28956 * 7 5 4 9 9 Si 1.86800 * 119.99946 * 202.28257 * 7 5 4 10 10 H 1.48502 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47044 * 120.00046 * 9 7 5 12 12 H 1.48493 * 109.47479 * 240.00211 * 9 7 5 13 13 C 1.46500 * 120.00056 * 83.90705 * 4 3 2 14 14 C 1.53006 * 109.46557 * 90.00645 * 13 4 3 15 15 C 1.50699 * 109.46854 * 179.97438 * 14 13 4 16 16 C 1.38357 * 119.85364 * 89.99780 * 15 14 13 17 17 C 1.37958 * 120.14481 * 180.02562 * 16 15 14 18 18 C 1.39570 * 119.85484 * 0.02562 * 17 16 15 19 19 C 1.47849 * 120.14534 * 179.97438 * 18 17 16 20 20 N 1.34780 * 119.99818 * 179.97438 * 19 18 17 21 21 O 1.21543 * 120.00015 * 0.02562 * 19 18 17 22 22 C 1.39578 * 119.71331 * 0.25483 * 18 17 16 23 23 C 1.37966 * 119.84831 * 359.46998 * 22 18 17 24 24 H 4.40643 * 5.51502 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47136 * 303.39682 * 3 2 1 26 26 H 1.09003 * 109.47037 * 183.40656 * 3 2 1 27 27 H 0.97001 * 120.00542 * 179.97438 * 8 7 5 28 28 H 1.08993 * 109.47274 * 330.00571 * 13 4 3 29 29 H 1.09001 * 109.46914 * 210.00275 * 13 4 3 30 30 H 1.09000 * 109.47352 * 60.00403 * 14 13 4 31 31 H 1.09001 * 109.47207 * 299.99451 * 14 13 4 32 32 H 1.08000 * 119.93036 * 0.02562 * 16 15 14 33 33 H 1.08007 * 120.07421 * 179.97438 * 17 16 15 34 34 H 0.96998 * 120.00549 * 0.02562 * 20 19 18 35 35 H 0.97002 * 119.99689 * 179.72681 * 20 19 18 36 36 H 1.07996 * 120.08024 * 179.72372 * 22 18 17 37 37 H 1.07993 * 119.92553 * 180.27565 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6174 -1.2350 5 6 3.4820 -1.9420 -1.2468 6 1 4.1208 -2.3257 -2.0285 7 6 3.0132 -2.7913 -0.2540 8 7 1.9285 -2.4778 0.4222 9 14 3.9219 -4.3794 0.1224 10 1 5.1023 -4.4980 -0.7709 11 1 4.3718 -4.3689 1.5375 12 1 3.0144 -5.5336 -0.0999 13 6 3.2516 0.1815 -2.4574 14 6 4.6446 0.8110 -2.5238 15 6 4.7652 1.6323 -3.7816 16 6 4.4132 2.9703 -3.7669 17 6 4.5207 3.7276 -4.9150 18 6 4.9852 3.1411 -6.0932 19 6 5.1024 3.9466 -7.3275 20 7 5.5517 3.3773 -8.4635 21 8 4.7944 5.1223 -7.3174 22 6 5.3330 1.7894 -6.1028 23 6 5.2261 1.0446 -4.9463 24 1 -1.0499 0.0000 -0.0003 25 1 3.0096 -0.5648 0.8580 26 1 3.0088 1.0267 0.0611 27 1 1.6006 -3.0714 1.1157 28 1 2.4973 0.9681 -2.4509 29 1 3.1008 -0.4595 -3.3261 30 1 5.3990 0.0243 -2.5304 31 1 4.7954 1.4519 -1.6552 32 1 4.0536 3.4229 -2.8546 33 1 4.2453 4.7719 -4.9023 34 1 5.7979 2.4391 -8.4715 35 1 5.6248 3.9048 -9.2743 36 1 5.6888 1.3284 -7.0123 37 1 5.4991 -0.0002 -4.9512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878551598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:39 Heat of formation + Delta-G solvation = 39.949470 kcal Electronic energy + Delta-G solvation = -19533.573058 eV Core-core repulsion = 16470.028674 eV Total energy + Delta-G solvation = -3063.544384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10228 -39.49055 -37.95703 -35.08228 -34.37409 -33.45081 -32.40674 -31.81423 -29.50954 -27.90935 -26.04431 -23.78447 -23.56191 -22.27575 -21.17791 -19.33943 -19.13029 -18.10980 -17.83002 -17.09098 -16.23888 -16.12671 -15.91344 -15.82036 -15.52030 -15.27768 -14.93121 -14.50423 -14.19048 -13.87526 -13.80265 -13.32247 -13.09934 -12.84120 -12.70548 -12.33383 -12.21669 -12.07913 -11.88865 -11.56175 -11.18620 -10.76913 -10.74466 -10.69159 -10.33429 -9.90737 -9.73321 -8.85384 -7.80423 -5.24089 -0.12829 0.46526 1.48940 1.53060 1.61660 1.84650 2.33435 2.53535 2.55899 2.61577 2.91180 3.31781 3.69168 3.86665 3.92552 4.06189 4.12205 4.20478 4.33456 4.48561 4.58693 4.70049 4.79754 4.92975 4.97035 5.03483 5.19672 5.27113 5.32115 5.42405 5.48963 5.65880 5.71107 5.74951 5.86413 5.98153 6.32445 6.41333 7.12573 7.28402 7.36487 7.85551 8.29309 9.20835 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.003732 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.179289 B = 7499.997608 C = 8248.876253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.134 4.134 3 C 0.270 3.730 4 N -0.600 5.600 5 C -0.268 4.268 6 H 0.078 0.922 7 C -0.046 4.046 8 N -0.914 5.914 9 Si 0.958 3.042 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.301 1.301 13 C 0.159 3.841 14 C -0.091 4.091 15 C -0.046 4.046 16 C -0.133 4.133 17 C -0.069 4.069 18 C -0.167 4.167 19 C 0.564 3.436 20 N -0.829 5.829 21 O -0.592 6.592 22 C -0.070 4.070 23 C -0.132 4.132 24 H 0.220 0.780 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.245 0.755 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.417 0.583 35 H 0.413 0.587 36 H 0.162 0.838 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 8.150 -13.394 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.137 4.137 3 C 0.144 3.856 4 N -0.320 5.320 5 C -0.398 4.398 6 H 0.096 0.904 7 C -0.242 4.242 8 N -0.559 5.559 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.220 1.220 12 H -0.228 1.228 13 C 0.033 3.967 14 C -0.130 4.130 15 C -0.047 4.047 16 C -0.151 4.151 17 C -0.088 4.088 18 C -0.170 4.170 19 C 0.351 3.649 20 N -0.394 5.394 21 O -0.474 6.474 22 C -0.089 4.089 23 C -0.150 4.150 24 H 0.237 0.763 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.249 0.751 35 H 0.245 0.755 36 H 0.180 0.820 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.166 8.740 -13.132 17.763 hybrid contribution -0.168 -1.276 0.275 1.316 sum 7.997 7.465 -12.857 16.881 Atomic orbital electron populations 1.24998 0.96413 1.06890 1.03213 1.24768 0.96296 0.94876 0.97718 1.17691 0.82665 0.95157 0.90041 1.44268 1.74824 1.07191 1.05727 1.19509 1.23648 0.85453 1.11181 0.90382 1.25596 0.96835 1.00682 1.01108 1.70299 1.20791 1.38652 1.26140 0.85355 0.78537 0.79806 0.77557 1.18897 1.22026 1.22842 1.20784 0.94150 0.93507 0.88255 1.21133 0.99442 0.98312 0.94157 1.20311 0.94598 0.93930 0.95841 1.21179 1.01309 0.93743 0.98830 1.21300 0.95516 1.00250 0.91708 1.19917 1.07752 0.95259 0.94068 1.18434 0.75691 0.86102 0.84659 1.43567 1.67686 1.16530 1.11581 1.90776 1.52119 1.18248 1.86225 1.21530 0.96375 0.91702 0.99269 1.21285 1.00550 1.01063 0.92060 0.76334 0.91672 0.91626 0.94500 0.94358 0.93979 0.91018 0.91074 0.84700 0.85375 0.75053 0.75490 0.82046 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.36 19.25 74.32 1.43 -11.93 16 2 C -0.13 -6.48 11.50 31.12 0.36 -6.12 16 3 C 0.27 12.51 5.41 84.57 0.46 12.97 16 4 N -0.60 -28.00 2.49 -712.57 -1.77 -29.77 16 5 C -0.27 -13.78 9.63 84.03 0.81 -12.97 16 6 H 0.08 3.86 7.92 -2.91 -0.02 3.84 16 7 C -0.05 -2.44 4.82 84.86 0.41 -2.03 16 8 N -0.91 -51.86 9.61 21.65 0.21 -51.65 16 9 Si 0.96 43.19 29.61 68.60 2.03 45.23 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 13 C 0.16 6.01 5.66 86.38 0.49 6.50 16 14 C -0.09 -2.74 5.66 29.85 0.17 -2.57 16 15 C -0.05 -1.18 5.14 -19.81 -0.10 -1.28 16 16 C -0.13 -3.30 9.68 22.23 0.22 -3.09 16 17 C -0.07 -1.71 9.60 22.52 0.22 -1.50 16 18 C -0.17 -3.72 5.87 -20.09 -0.12 -3.83 16 19 C 0.56 12.60 8.05 86.79 0.70 13.30 16 20 N -0.83 -9.97 8.82 -175.61 -1.55 -11.52 16 21 O -0.59 -18.35 17.18 -3.85 -0.07 -18.41 16 22 C -0.07 -1.25 9.54 22.53 0.21 -1.04 16 23 C -0.13 -2.86 9.68 22.23 0.22 -2.64 16 24 H 0.22 8.06 7.80 -4.42 -0.03 8.02 16 25 H 0.07 3.35 6.59 -2.39 -0.02 3.33 16 26 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 27 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.04 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.04 1.63 8.04 -2.39 -0.02 1.62 16 30 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 31 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 32 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.13 3.22 7.65 -2.91 -0.02 3.20 16 34 H 0.42 2.36 6.86 -92.71 -0.64 1.72 16 35 H 0.41 3.80 8.93 -92.71 -0.83 2.97 16 36 H 0.16 1.46 6.41 -2.91 -0.02 1.45 16 37 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -69.37 325.50 3.94 -65.43 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -0.37 Total: 16.93 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.46 Total: -16.24 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -3.11 Total: -92.94 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.07 Total: -18.41 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.37 3.94 -65.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878551598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.382 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds