Wall clock time and date at job start Mon Mar 30 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35984 * 116.99921 * 2 1 4 4 C 1.38967 * 119.10310 * 0.02562 * 3 2 1 5 5 C 1.38339 * 122.22021 * 179.97438 * 4 3 2 6 6 C 1.39316 * 117.13280 * 0.03971 * 5 4 3 7 7 N 1.36740 * 131.96198 * 179.97438 * 6 5 4 8 8 H 0.96994 * 125.14157 * 0.29673 * 7 6 5 9 9 C 1.36915 * 109.71609 * 180.02562 * 7 6 5 10 10 C 1.35068 * 109.93901 * 359.87197 * 9 7 6 11 11 C 1.41798 * 120.77007 * 359.92111 * 6 5 4 12 12 C 1.38715 * 119.09845 * 180.02562 * 3 2 1 13 13 C 1.50743 * 124.77905 * 180.23760 * 10 9 7 14 14 C 1.53343 * 108.97005 * 342.08526 * 13 10 9 15 15 N 1.47067 * 108.94766 * 45.25169 * 14 13 10 16 16 C 1.36936 * 120.84659 * 115.60387 * 15 14 13 17 17 H 1.08002 * 120.00606 * 335.25881 * 16 15 14 18 18 C 1.38812 * 120.00209 * 155.25917 * 16 15 14 19 19 N 1.31627 * 119.99802 * 344.16618 * 18 16 15 20 20 Si 1.86799 * 120.00484 * 164.16784 * 18 16 15 21 21 H 1.48503 * 109.46880 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47320 * 120.00110 * 20 18 16 23 23 H 1.48505 * 109.47116 * 240.00305 * 20 18 16 24 24 C 1.47297 * 118.29891 * 295.62996 * 15 14 13 25 25 H 1.08996 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46878 * 299.99960 * 1 2 3 27 27 H 1.08996 * 109.47074 * 59.99773 * 1 2 3 28 28 H 1.08001 * 118.89010 * 0.02562 * 4 3 2 29 29 H 1.08000 * 121.43199 * 180.02562 * 5 4 3 30 30 H 1.08005 * 121.62911 * 359.97438 * 12 3 2 31 31 H 1.08994 * 109.55372 * 101.93230 * 13 10 9 32 32 H 1.09000 * 109.55099 * 222.14311 * 13 10 9 33 33 H 1.08998 * 109.55915 * 165.09186 * 14 13 10 34 34 H 1.09002 * 109.55898 * 285.41564 * 14 13 10 35 35 H 0.96991 * 120.00424 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.86312 * 284.94876 * 24 15 14 37 37 H 1.08997 * 109.84479 * 163.94408 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2713 2.3651 0.0005 5 6 1.8314 3.6300 0.0011 6 6 3.2223 3.7090 0.0002 7 7 4.0775 4.7760 0.0000 8 1 3.8077 5.7077 0.0045 9 6 5.3721 4.3304 -0.0015 10 6 5.3943 2.9799 0.0005 11 6 4.0157 2.5338 0.0005 12 6 3.4326 1.2624 -0.0005 13 6 6.6465 2.1406 0.0048 14 6 7.8299 3.0085 -0.4397 15 7 7.7650 4.2997 0.2614 16 6 8.7440 4.6690 1.1448 17 1 9.3369 3.9144 1.6404 18 6 8.9745 6.0132 1.4034 19 7 8.4899 6.9315 0.5944 20 14 9.9725 6.5189 2.8993 21 1 10.3998 5.3062 3.6423 22 1 11.1704 7.2794 2.4612 23 1 9.1400 7.3731 3.7840 24 6 6.6197 5.1852 -0.0105 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.1954 2.2708 0.0014 29 1 1.2168 4.5181 0.0019 30 1 4.0323 0.3642 -0.0006 31 1 6.8288 1.7625 1.0107 32 1 6.5271 1.3038 -0.6834 33 1 8.7646 2.5055 -0.1921 34 1 7.7768 3.1745 -1.5157 35 1 8.6507 7.8707 0.7752 36 1 6.7390 5.6558 -0.9864 37 1 6.5507 5.9491 0.7639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880369110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:46 Heat of formation + Delta-G solvation = 42.061182 kcal Electronic energy + Delta-G solvation = -20440.283187 eV Core-core repulsion = 17376.830374 eV Total energy + Delta-G solvation = -3063.452813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98105 -39.11663 -36.47776 -34.94369 -32.87911 -31.27464 -29.83224 -28.73606 -28.19661 -26.66720 -25.43428 -23.54442 -21.73564 -21.29453 -20.66452 -18.35275 -17.60052 -17.22913 -16.30908 -15.70565 -15.59090 -15.23977 -14.49757 -14.40443 -13.76914 -13.59367 -13.43399 -13.18355 -12.75524 -12.52450 -12.22247 -12.11260 -11.93507 -11.78809 -11.24932 -11.09630 -10.84665 -10.63849 -10.45729 -10.29594 -10.08513 -9.99951 -9.85473 -9.11330 -8.64933 -7.34691 -6.92297 -6.84860 -5.90460 -3.29104 1.36556 1.96266 3.26807 3.33225 3.41670 3.44290 3.45831 3.64868 4.16627 4.44010 4.90577 5.08038 5.09793 5.12561 5.28955 5.37859 5.40792 5.45480 5.58011 5.66922 5.88628 5.96989 6.09259 6.19255 6.31587 6.34956 6.48739 6.56130 6.72510 6.80450 6.88597 6.94584 7.06364 7.18104 7.44128 7.62623 7.70229 7.73912 8.05722 8.28784 9.08528 9.71652 10.27905 11.20832 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004355 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.024936 B = 6427.400973 C = 6750.372437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.085 3.915 4 C -0.196 4.196 5 C -0.094 4.094 6 C 0.061 3.939 7 N -0.587 5.587 8 H 0.412 0.588 9 C 0.088 3.912 10 C -0.184 4.184 11 C -0.058 4.058 12 C -0.108 4.108 13 C -0.058 4.058 14 C 0.144 3.856 15 N -0.588 5.588 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.001 4.001 19 N -0.911 5.911 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.231 3.769 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.255 0.745 36 H 0.049 0.951 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 -7.759 -2.114 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.040 3.960 4 C -0.216 4.216 5 C -0.115 4.115 6 C -0.046 4.046 7 N -0.190 5.190 8 H 0.249 0.751 9 C -0.022 4.022 10 C -0.190 4.190 11 C -0.063 4.063 12 C -0.127 4.127 13 C -0.098 4.098 14 C 0.018 3.982 15 N -0.310 5.310 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.198 4.198 19 N -0.556 5.556 20 Si 0.736 3.264 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.216 1.216 24 C 0.104 3.896 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.138 0.862 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.819 -7.651 -2.093 15.934 hybrid contribution -0.177 1.031 0.799 1.316 sum -13.996 -6.620 -1.294 15.537 Atomic orbital electron populations 1.22919 0.79524 1.03125 1.00880 1.86058 1.20448 1.27487 1.89942 1.18733 0.91721 0.83613 1.01933 1.20717 0.99110 0.91648 1.10133 1.20064 0.90529 0.96956 1.03952 1.18361 0.91225 0.87572 1.07469 1.41515 1.04872 1.07438 1.65152 0.75143 1.22542 0.85696 0.95678 0.98297 1.19780 0.92072 0.92548 1.14553 1.18805 0.93054 0.91204 1.03240 1.19932 0.90575 0.96308 1.05866 1.20510 0.92084 0.96581 1.00635 1.20997 0.95523 0.87045 0.94608 1.43973 1.21445 1.16519 1.49069 1.19279 1.11260 0.91054 1.15952 0.90935 1.25019 0.99602 0.96287 0.98933 1.69993 1.49574 1.00130 1.35896 0.86151 0.79348 0.78370 0.82523 1.20128 1.21630 1.21593 1.19624 0.78693 0.90289 1.00993 0.88914 0.93135 0.93147 0.86171 0.85722 0.84999 0.92022 0.92456 0.91957 0.95452 0.93524 0.93379 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.78 101.05 0.99 1.27 16 2 O -0.33 -4.51 10.47 -19.69 -0.21 -4.72 16 3 C 0.09 1.31 6.67 -39.14 -0.26 1.05 16 4 C -0.20 -2.71 8.94 -39.27 -0.35 -3.06 16 5 C -0.09 -1.35 10.27 -39.14 -0.40 -1.75 16 6 C 0.06 1.05 7.19 -83.92 -0.60 0.45 16 7 N -0.59 -10.22 6.05 -6.48 -0.04 -10.26 16 8 H 0.41 5.94 8.96 -40.82 -0.37 5.58 16 9 C 0.09 1.82 7.10 -81.18 -0.58 1.24 16 10 C -0.18 -3.71 6.15 -103.09 -0.63 -4.35 16 11 C -0.06 -1.08 6.26 -105.29 -0.66 -1.74 16 12 C -0.11 -1.82 10.23 -38.80 -0.40 -2.22 16 13 C -0.06 -1.11 6.44 -27.68 -0.18 -1.29 16 14 C 0.14 3.03 6.47 -3.55 -0.02 3.01 16 15 N -0.59 -14.54 2.98 -172.98 -0.51 -15.05 16 16 C -0.25 -6.59 9.64 -15.06 -0.15 -6.74 16 17 H 0.07 1.90 7.88 -52.49 -0.41 1.49 16 18 C 0.00 -0.02 4.98 -17.43 -0.09 -0.10 16 19 N -0.91 -25.32 11.09 55.49 0.62 -24.71 16 20 Si 0.91 21.25 29.58 -169.99 -5.03 16.22 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.23 5.40 5.37 -4.49 -0.02 5.38 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.42 7.60 -51.93 -0.39 0.02 16 27 H 0.05 0.41 7.60 -51.93 -0.39 0.02 16 28 H 0.12 1.30 6.06 -52.49 -0.32 0.98 16 29 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.13 2.07 8.06 -52.48 -0.42 1.64 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.24 7.94 -51.93 -0.41 0.83 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.10 2.47 6.39 -51.93 -0.33 2.14 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -30.32 304.53 -8.66 -38.99 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.72 Total: 3.80 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -3.35 Total: -8.85 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.06 Total: -50.02 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.21 Total: -4.72 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.32 -8.66 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880369110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.047 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds