Wall clock time and date at job start Mon Mar 30 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35984 * 116.99921 * 2 1 4 4 C 1.38967 * 119.10310 * 0.02562 * 3 2 1 5 5 C 1.38339 * 122.22021 * 179.97438 * 4 3 2 6 6 C 1.39316 * 117.13280 * 0.03971 * 5 4 3 7 7 N 1.36740 * 131.96198 * 179.97438 * 6 5 4 8 8 H 0.96994 * 125.14157 * 0.29673 * 7 6 5 9 9 C 1.36915 * 109.71609 * 180.02562 * 7 6 5 10 10 C 1.35068 * 109.93901 * 359.87197 * 9 7 6 11 11 C 1.41798 * 120.77007 * 359.92111 * 6 5 4 12 12 C 1.38715 * 119.09845 * 180.02562 * 3 2 1 13 13 C 1.50743 * 124.77905 * 180.23760 * 10 9 7 14 14 C 1.53343 * 108.97005 * 342.08526 * 13 10 9 15 15 N 1.47067 * 108.94766 * 45.25169 * 14 13 10 16 16 C 1.36936 * 120.84659 * 115.60387 * 15 14 13 17 17 H 1.08002 * 120.00606 * 335.25881 * 16 15 14 18 18 C 1.38812 * 120.00209 * 155.25917 * 16 15 14 19 19 N 1.31627 * 119.99802 * 344.16618 * 18 16 15 20 20 Si 1.86799 * 120.00484 * 164.16784 * 18 16 15 21 21 H 1.48503 * 109.46880 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47320 * 120.00110 * 20 18 16 23 23 H 1.48505 * 109.47116 * 240.00305 * 20 18 16 24 24 C 1.47297 * 118.29891 * 295.62996 * 15 14 13 25 25 H 1.08996 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46878 * 299.99960 * 1 2 3 27 27 H 1.08996 * 109.47074 * 59.99773 * 1 2 3 28 28 H 1.08001 * 118.89010 * 0.02562 * 4 3 2 29 29 H 1.08000 * 121.43199 * 180.02562 * 5 4 3 30 30 H 1.08005 * 121.62911 * 359.97438 * 12 3 2 31 31 H 1.08994 * 109.55372 * 101.93230 * 13 10 9 32 32 H 1.09000 * 109.55099 * 222.14311 * 13 10 9 33 33 H 1.08998 * 109.55915 * 165.09186 * 14 13 10 34 34 H 1.09002 * 109.55898 * 285.41564 * 14 13 10 35 35 H 0.96991 * 120.00424 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.86312 * 284.94876 * 24 15 14 37 37 H 1.08997 * 109.84479 * 163.94408 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2713 2.3651 0.0005 5 6 1.8314 3.6300 0.0011 6 6 3.2223 3.7090 0.0002 7 7 4.0775 4.7760 0.0000 8 1 3.8077 5.7077 0.0045 9 6 5.3721 4.3304 -0.0015 10 6 5.3943 2.9799 0.0005 11 6 4.0157 2.5338 0.0005 12 6 3.4326 1.2624 -0.0005 13 6 6.6465 2.1406 0.0048 14 6 7.8299 3.0085 -0.4397 15 7 7.7650 4.2997 0.2614 16 6 8.7440 4.6690 1.1448 17 1 9.3369 3.9144 1.6404 18 6 8.9745 6.0132 1.4034 19 7 8.4899 6.9315 0.5944 20 14 9.9725 6.5189 2.8993 21 1 10.3998 5.3062 3.6423 22 1 11.1704 7.2794 2.4612 23 1 9.1400 7.3731 3.7840 24 6 6.6197 5.1852 -0.0105 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.1954 2.2708 0.0014 29 1 1.2168 4.5181 0.0019 30 1 4.0323 0.3642 -0.0006 31 1 6.8288 1.7625 1.0107 32 1 6.5271 1.3038 -0.6834 33 1 8.7646 2.5055 -0.1921 34 1 7.7768 3.1745 -1.5157 35 1 8.6507 7.8707 0.7752 36 1 6.7390 5.6558 -0.9864 37 1 6.5507 5.9491 0.7639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880369110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:45 Heat of formation + Delta-G solvation = 24.217737 kcal Electronic energy + Delta-G solvation = -20441.056936 eV Core-core repulsion = 17376.830374 eV Total energy + Delta-G solvation = -3064.226563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32476 -40.21958 -38.10761 -36.24276 -34.60598 -32.83482 -31.33605 -30.29752 -29.49615 -27.62714 -27.13278 -25.18853 -23.21184 -22.80789 -21.97366 -19.91852 -18.91907 -18.60048 -17.96014 -17.06538 -16.60620 -16.52699 -16.13028 -15.88731 -15.36864 -15.21180 -14.94665 -14.34321 -14.20673 -13.96547 -13.74600 -13.47029 -13.21232 -13.04709 -12.72189 -12.69215 -12.62749 -12.18438 -12.10844 -11.93861 -11.76063 -11.48718 -11.27369 -10.66220 -10.40697 -8.83222 -8.65195 -8.27387 -7.93735 -5.35329 0.11403 0.73801 1.46551 1.49238 1.59699 1.78768 2.22096 2.51169 2.56581 2.92143 3.26471 3.61694 3.81675 3.95764 4.13696 4.15881 4.32127 4.42121 4.49504 4.50991 4.52754 4.70666 4.75919 4.80192 4.85498 5.02056 5.07057 5.09871 5.17938 5.27960 5.35618 5.39534 5.54286 5.62107 5.72255 6.00422 6.19768 6.30322 6.60708 6.76302 7.07459 7.75363 8.29732 9.16171 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004355 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.024936 B = 6427.400973 C = 6750.372437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.087 3.913 4 C -0.186 4.186 5 C -0.087 4.087 6 C 0.048 3.952 7 N -0.579 5.579 8 H 0.423 0.577 9 C 0.062 3.938 10 C -0.194 4.194 11 C -0.084 4.084 12 C -0.127 4.127 13 C -0.050 4.050 14 C 0.142 3.858 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.074 0.926 18 C -0.049 4.049 19 N -0.937 5.937 20 Si 0.969 3.031 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.248 3.752 25 H 0.116 0.884 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.135 0.865 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.252 0.748 36 H 0.025 0.975 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 -8.959 -1.722 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.042 3.958 4 C -0.205 4.205 5 C -0.107 4.107 6 C -0.059 4.059 7 N -0.183 5.183 8 H 0.261 0.739 9 C -0.049 4.049 10 C -0.201 4.201 11 C -0.089 4.089 12 C -0.146 4.146 13 C -0.089 4.089 14 C 0.017 3.983 15 N -0.329 5.329 16 C -0.389 4.389 17 H 0.091 0.909 18 C -0.244 4.244 19 N -0.584 5.584 20 Si 0.797 3.203 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.121 3.879 25 H 0.134 0.866 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.385 -8.871 -1.709 18.710 hybrid contribution 0.418 1.258 0.630 1.468 sum -15.967 -7.613 -1.079 17.722 Atomic orbital electron populations 1.23292 0.76898 1.05262 1.02096 1.86050 1.23147 1.26770 1.89573 1.18865 0.91458 0.84872 1.00619 1.21153 1.00946 0.90709 1.07712 1.20527 0.89331 0.98659 1.02196 1.18722 0.92407 0.86792 1.07953 1.41347 1.03828 1.08270 1.64831 0.73865 1.21930 0.86032 0.95509 1.01395 1.20043 0.93373 0.92596 1.14082 1.18906 0.92401 0.92557 1.05030 1.20044 0.91820 0.95805 1.06933 1.20400 0.90940 0.96693 1.00889 1.21123 0.96890 0.86002 0.94293 1.44219 1.21664 1.17672 1.49382 1.19577 1.11657 0.91380 1.16332 0.90872 1.25745 1.01056 0.96289 1.01310 1.70135 1.50867 1.00093 1.37272 0.85173 0.77739 0.77968 0.79377 1.19195 1.21671 1.21779 1.19121 0.80141 0.89992 0.98666 0.86624 0.91879 0.91763 0.82466 0.82242 0.84740 0.92436 0.89976 0.91307 0.95481 0.93850 0.95731 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.78 113.37 1.11 1.38 16 2 O -0.34 -8.41 10.47 -93.37 -0.98 -9.39 16 3 C 0.09 2.45 6.67 22.56 0.15 2.60 16 4 C -0.19 -4.37 8.94 22.47 0.20 -4.17 16 5 C -0.09 -2.19 10.27 22.55 0.23 -1.95 16 6 C 0.05 1.60 7.19 39.52 0.28 1.89 16 7 N -0.58 -20.16 6.05 -174.40 -1.05 -21.22 16 8 H 0.42 12.20 8.96 -92.71 -0.83 11.37 16 9 C 0.06 2.63 7.10 41.21 0.29 2.93 16 10 C -0.19 -7.94 6.15 -18.87 -0.12 -8.06 16 11 C -0.08 -3.08 6.26 -20.30 -0.13 -3.21 16 12 C -0.13 -4.13 10.23 22.78 0.23 -3.90 16 13 C -0.05 -1.91 6.44 29.98 0.19 -1.71 16 14 C 0.14 6.09 6.47 86.39 0.56 6.64 16 15 N -0.61 -31.02 2.98 -701.17 -2.09 -33.11 16 16 C -0.26 -14.25 9.64 84.03 0.81 -13.44 16 17 H 0.07 3.90 7.88 -2.91 -0.02 3.88 16 18 C -0.05 -2.69 4.98 84.86 0.42 -2.27 16 19 N -0.94 -53.88 11.09 21.65 0.24 -53.64 16 20 Si 0.97 44.42 29.58 68.60 2.03 46.45 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 C 0.25 12.17 5.37 85.65 0.46 12.63 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 0.75 7.60 -2.38 -0.02 0.74 16 27 H 0.06 0.75 7.60 -2.39 -0.02 0.73 16 28 H 0.16 2.51 6.06 -2.91 -0.02 2.49 16 29 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.07 2.78 7.94 -2.39 -0.02 2.76 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.07 3.70 6.39 -2.39 -0.02 3.68 16 Total: -1.00 -66.63 304.53 3.12 -63.51 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.26 Total: 18.04 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.70 Total: -10.65 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -2.90 Total: -107.96 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.98 Total: -9.39 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.63 3.12 -63.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880369110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.732 kcal (2) G-P(sol) polarization free energy of solvation -66.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds