Wall clock time and date at job start Mon Mar 30 2020 00:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33028 * 120.00506 * 2 1 4 4 C 1.47046 * 120.00433 * 172.59535 * 3 2 1 5 5 O 1.21610 * 119.99834 * 2.58543 * 4 3 2 6 6 N 1.34777 * 119.99910 * 182.58676 * 4 3 2 7 7 C 1.39158 * 119.99866 * 184.45255 * 6 4 3 8 8 C 1.39699 * 119.57747 * 343.86451 * 7 6 4 9 9 C 1.38647 * 119.49659 * 180.02562 * 8 7 6 10 10 C 1.38358 * 118.66768 * 0.02562 * 9 8 7 11 11 C 1.40573 * 119.13430 * 359.97438 * 10 9 8 12 12 C 1.41333 * 119.78557 * 179.97438 * 11 10 9 13 13 H 1.08009 * 119.99811 * 5.48652 * 12 11 10 14 14 C 1.40027 * 120.00188 * 185.48713 * 12 11 10 15 15 N 1.30749 * 119.99690 * 184.33252 * 14 12 11 16 16 Si 1.86795 * 120.00058 * 4.33450 * 14 12 11 17 17 H 1.48499 * 109.46972 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47167 * 299.99910 * 16 14 12 19 19 H 1.48495 * 109.47344 * 59.99543 * 16 14 12 20 20 N 1.31923 * 119.57499 * 164.13775 * 7 6 4 21 21 C 1.50704 * 120.00163 * 180.02562 * 2 1 3 22 22 C 1.53001 * 117.49323 * 358.69503 * 21 2 1 23 23 C 1.53000 * 60.00006 * 252.51025 * 22 21 2 24 24 H 1.08991 * 109.47329 * 89.99764 * 1 2 3 25 25 H 1.09004 * 109.46997 * 210.00381 * 1 2 3 26 26 H 1.09005 * 109.47052 * 329.99773 * 1 2 3 27 27 H 1.08008 * 119.99354 * 352.59655 * 3 2 1 28 28 H 0.97005 * 120.00044 * 4.44942 * 6 4 3 29 29 H 1.07999 * 120.25153 * 359.97438 * 8 7 6 30 30 H 1.07994 * 120.66290 * 179.97438 * 9 8 7 31 31 H 1.07995 * 120.42733 * 180.02562 * 10 9 8 32 32 H 0.96993 * 120.00441 * 354.96306 * 15 14 12 33 33 H 1.08998 * 115.55282 * 144.40275 * 21 2 1 34 34 H 1.08991 * 117.50427 * 359.97438 * 22 21 2 35 35 H 1.08999 * 117.49748 * 145.02159 * 22 21 2 36 36 H 1.09002 * 117.50421 * 252.51352 * 23 22 21 37 37 H 1.08999 * 117.51622 * 107.47871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 3.6335 1.1573 0.1641 5 8 4.2392 0.1065 0.2527 6 7 4.3015 2.3267 0.2164 7 6 5.6917 2.3317 0.2784 8 6 6.3707 1.1608 0.6240 9 6 7.7558 1.1678 0.6858 10 6 8.4269 2.3438 0.4013 11 6 7.6866 3.4889 0.0598 12 6 8.3581 4.6976 -0.2329 13 1 9.4369 4.7182 -0.2806 14 6 7.6247 5.8685 -0.4608 15 7 8.2399 6.9667 -0.8146 16 14 5.7677 5.8616 -0.2596 17 1 5.2325 7.2144 -0.5571 18 1 5.1717 4.8767 -1.1977 19 1 5.4223 5.4879 1.1355 20 7 6.3512 3.4435 0.0152 21 6 2.2605 -1.3051 -0.0006 22 6 1.4386 -2.5953 0.0297 23 6 2.2103 -2.1504 1.2737 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6389 2.0835 -0.1205 28 1 3.8132 3.1649 0.2108 29 1 5.8209 0.2572 0.8423 30 1 8.2998 0.2735 0.9514 31 1 9.5055 2.3812 0.4404 32 1 9.2090 6.9904 -0.8482 33 1 3.1881 -1.3122 -0.5730 34 1 0.3531 -2.5002 0.0506 35 1 1.8254 -3.4515 -0.5229 36 1 3.1048 -2.7138 1.5395 37 1 1.6326 -1.7623 2.1126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:45 Heat of formation + Delta-G solvation = 39.463758 kcal Electronic energy + Delta-G solvation = -20188.358756 eV Core-core repulsion = 17124.793311 eV Total energy + Delta-G solvation = -3063.565446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27176 -38.57026 -37.47902 -34.51689 -33.62376 -33.35656 -31.07327 -29.78007 -28.04158 -25.32070 -23.95756 -22.42830 -22.06859 -21.67354 -20.13616 -18.86628 -18.24340 -17.13112 -16.60725 -15.68181 -15.05058 -15.01188 -14.86914 -14.16833 -13.73180 -13.61860 -13.32968 -13.12613 -12.86874 -12.72616 -12.44066 -12.18244 -11.91193 -11.69078 -11.43528 -11.06023 -10.86254 -10.72649 -10.35940 -10.30608 -9.97209 -9.63222 -9.20610 -9.03747 -8.73619 -8.51274 -7.72716 -7.41670 -7.19797 -4.76141 1.22022 2.49689 2.67210 3.36867 3.48682 3.54627 3.66854 3.89728 3.98149 4.40333 4.44930 4.65566 4.68535 4.91609 4.96881 5.04165 5.23148 5.31103 5.40745 5.50918 5.54727 5.66029 5.80833 5.88987 6.04355 6.09729 6.19604 6.25723 6.42303 6.54808 6.56492 6.66682 7.17835 7.23523 7.45393 7.60570 7.71631 7.80774 8.15451 8.33816 8.53174 8.67714 9.43388 10.01454 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.004885 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.207907 B = 5730.900626 C = 6619.154296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.004 4.004 3 C -0.221 4.221 4 C 0.548 3.452 5 O -0.511 6.511 6 N -0.649 5.649 7 C 0.385 3.615 8 C -0.323 4.323 9 C -0.037 4.037 10 C -0.279 4.279 11 C 0.274 3.726 12 C -0.478 4.478 13 H 0.083 0.917 14 C 0.044 3.956 15 N -0.808 5.808 16 Si 1.154 2.846 17 H -0.333 1.333 18 H -0.280 1.280 19 H -0.295 1.295 20 N -0.601 5.601 21 C -0.121 4.121 22 C -0.191 4.191 23 C -0.156 4.156 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.406 0.594 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.283 0.717 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 -12.120 2.001 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.006 4.006 3 C -0.242 4.242 4 C 0.339 3.661 5 O -0.389 6.389 6 N -0.292 5.292 7 C 0.155 3.845 8 C -0.347 4.347 9 C -0.061 4.061 10 C -0.301 4.301 11 C 0.150 3.850 12 C -0.511 4.511 13 H 0.101 0.899 14 C -0.177 4.177 15 N -0.430 5.430 16 Si 0.990 3.010 17 H -0.267 1.267 18 H -0.208 1.208 19 H -0.223 1.223 20 N -0.327 5.327 21 C -0.138 4.138 22 C -0.228 4.228 23 C -0.193 4.193 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.148 0.852 28 H 0.242 0.758 29 H 0.174 0.826 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.167 -11.155 1.646 19.710 hybrid contribution 2.032 -1.004 0.301 2.286 sum -14.135 -12.158 1.947 18.746 Atomic orbital electron populations 1.21014 0.91099 1.03267 1.03051 1.21802 0.95164 0.93306 0.90297 1.22319 0.92929 0.98969 1.10032 1.18489 0.87869 0.83093 0.76682 1.90530 1.68468 1.31241 1.48636 1.43194 1.05578 1.09551 1.70908 1.18179 0.82194 0.91253 0.92911 1.22138 0.94562 1.00135 1.17846 1.20988 0.94040 0.96367 0.94693 1.21611 0.99079 0.94535 1.14911 1.18259 0.85717 0.93312 0.87717 1.20721 0.95769 0.93039 1.41543 0.89912 1.27767 1.10694 0.90800 0.88471 1.70644 1.13050 1.29380 1.29901 0.81844 0.70520 0.70559 0.78064 1.26650 1.20846 1.22300 1.65962 1.10121 1.26471 1.30148 1.21577 1.00941 0.87914 1.03385 1.23128 0.98592 0.98526 1.02510 1.22798 1.02421 1.02683 0.91369 0.90243 0.90779 0.90886 0.85158 0.75845 0.82602 0.87706 0.87804 0.90613 0.84315 0.88764 0.88715 0.88459 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.56 36.00 0.34 -0.61 16 2 C 0.00 -0.04 5.80 -101.16 -0.59 -0.63 16 3 C -0.22 -2.78 9.62 -37.82 -0.36 -3.14 16 4 C 0.55 9.31 7.64 -12.69 -0.10 9.21 16 5 O -0.51 -9.60 9.68 5.27 0.05 -9.55 16 6 N -0.65 -12.42 5.40 -12.49 -0.07 -12.48 16 7 C 0.39 9.03 7.55 -155.06 -1.17 7.86 16 8 C -0.32 -7.38 8.98 -38.88 -0.35 -7.73 16 9 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 10 C -0.28 -6.81 9.83 -38.66 -0.38 -7.19 16 11 C 0.27 7.36 6.40 -85.00 -0.54 6.82 16 12 C -0.48 -13.29 9.57 -37.74 -0.36 -13.65 16 13 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 14 C 0.04 1.20 5.52 -17.34 -0.10 1.10 16 15 N -0.81 -22.28 13.65 55.55 0.76 -21.52 16 16 Si 1.15 28.20 25.59 -169.99 -4.35 23.85 16 17 H -0.33 -8.01 7.11 56.52 0.40 -7.61 16 18 H -0.28 -6.73 6.62 56.52 0.37 -6.36 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 N -0.60 -15.54 4.54 -10.27 -0.05 -15.59 16 21 C -0.12 -1.45 4.35 -91.77 -0.40 -1.85 16 22 C -0.19 -1.76 9.81 -26.73 -0.26 -2.03 16 23 C -0.16 -1.67 10.23 -26.73 -0.27 -1.95 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.48 6.24 -51.93 -0.32 0.16 16 26 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 27 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.41 6.88 8.81 -40.82 -0.36 6.52 16 29 H 0.16 3.45 4.84 -54.72 -0.27 3.18 16 30 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 31 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.28 7.46 8.72 -40.82 -0.36 7.10 16 33 H 0.14 2.04 6.18 -51.93 -0.32 1.72 16 34 H 0.09 0.71 6.24 -51.93 -0.32 0.39 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -30.81 308.63 -8.52 -39.33 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.57 Total: 6.31 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -4.94 Total: -14.99 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.64 Total: -49.59 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.05 Total: -9.55 kcal Atomic # 14 Polarization: 28.20 SS G_CDS: -4.35 Total: 23.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.81 -8.52 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.794 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds