Wall clock time and date at job start Mon Mar 30 2020 00:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33028 * 120.00506 * 2 1 4 4 C 1.47046 * 120.00433 * 172.59535 * 3 2 1 5 5 O 1.21610 * 119.99834 * 2.58543 * 4 3 2 6 6 N 1.34777 * 119.99910 * 182.58676 * 4 3 2 7 7 C 1.39158 * 119.99866 * 184.45255 * 6 4 3 8 8 C 1.39699 * 119.57747 * 343.86451 * 7 6 4 9 9 C 1.38647 * 119.49659 * 180.02562 * 8 7 6 10 10 C 1.38358 * 118.66768 * 0.02562 * 9 8 7 11 11 C 1.40573 * 119.13430 * 359.97438 * 10 9 8 12 12 C 1.41333 * 119.78557 * 179.97438 * 11 10 9 13 13 H 1.08009 * 119.99811 * 5.48652 * 12 11 10 14 14 C 1.40027 * 120.00188 * 185.48713 * 12 11 10 15 15 N 1.30749 * 119.99690 * 184.33252 * 14 12 11 16 16 Si 1.86795 * 120.00058 * 4.33450 * 14 12 11 17 17 H 1.48499 * 109.46972 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47167 * 299.99910 * 16 14 12 19 19 H 1.48495 * 109.47344 * 59.99543 * 16 14 12 20 20 N 1.31923 * 119.57499 * 164.13775 * 7 6 4 21 21 C 1.50704 * 120.00163 * 180.02562 * 2 1 3 22 22 C 1.53001 * 117.49323 * 358.69503 * 21 2 1 23 23 C 1.53000 * 60.00006 * 252.51025 * 22 21 2 24 24 H 1.08991 * 109.47329 * 89.99764 * 1 2 3 25 25 H 1.09004 * 109.46997 * 210.00381 * 1 2 3 26 26 H 1.09005 * 109.47052 * 329.99773 * 1 2 3 27 27 H 1.08008 * 119.99354 * 352.59655 * 3 2 1 28 28 H 0.97005 * 120.00044 * 4.44942 * 6 4 3 29 29 H 1.07999 * 120.25153 * 359.97438 * 8 7 6 30 30 H 1.07994 * 120.66290 * 179.97438 * 9 8 7 31 31 H 1.07995 * 120.42733 * 180.02562 * 10 9 8 32 32 H 0.96993 * 120.00441 * 354.96306 * 15 14 12 33 33 H 1.08998 * 115.55282 * 144.40275 * 21 2 1 34 34 H 1.08991 * 117.50427 * 359.97438 * 22 21 2 35 35 H 1.08999 * 117.49748 * 145.02159 * 22 21 2 36 36 H 1.09002 * 117.50421 * 252.51352 * 23 22 21 37 37 H 1.08999 * 117.51622 * 107.47871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 3.6335 1.1573 0.1641 5 8 4.2392 0.1065 0.2527 6 7 4.3015 2.3267 0.2164 7 6 5.6917 2.3317 0.2784 8 6 6.3707 1.1608 0.6240 9 6 7.7558 1.1678 0.6858 10 6 8.4269 2.3438 0.4013 11 6 7.6866 3.4889 0.0598 12 6 8.3581 4.6976 -0.2329 13 1 9.4369 4.7182 -0.2806 14 6 7.6247 5.8685 -0.4608 15 7 8.2399 6.9667 -0.8146 16 14 5.7677 5.8616 -0.2596 17 1 5.2325 7.2144 -0.5571 18 1 5.1717 4.8767 -1.1977 19 1 5.4223 5.4879 1.1355 20 7 6.3512 3.4435 0.0152 21 6 2.2605 -1.3051 -0.0006 22 6 1.4386 -2.5953 0.0297 23 6 2.2103 -2.1504 1.2737 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6389 2.0835 -0.1205 28 1 3.8132 3.1649 0.2108 29 1 5.8209 0.2572 0.8423 30 1 8.2998 0.2735 0.9514 31 1 9.5055 2.3812 0.4404 32 1 9.2090 6.9904 -0.8482 33 1 3.1881 -1.3122 -0.5730 34 1 0.3531 -2.5002 0.0506 35 1 1.8254 -3.4515 -0.5229 36 1 3.1048 -2.7138 1.5395 37 1 1.6326 -1.7623 2.1126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:44 Heat of formation + Delta-G solvation = 21.942027 kcal Electronic energy + Delta-G solvation = -20189.118555 eV Core-core repulsion = 17124.793311 eV Total energy + Delta-G solvation = -3064.325245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73970 -40.11224 -38.61692 -36.20692 -35.36087 -34.37285 -32.98096 -31.49872 -29.01310 -27.22431 -25.13248 -23.71894 -23.35645 -23.06828 -21.67394 -20.48587 -19.78255 -18.36940 -18.13734 -17.07525 -16.69838 -16.33247 -16.21166 -15.80080 -15.42434 -14.80403 -14.73574 -14.35152 -14.27282 -13.98710 -13.91490 -13.74470 -13.24202 -12.92970 -12.76225 -12.32133 -12.22350 -12.12226 -11.77293 -11.66653 -11.55218 -11.24491 -11.13318 -10.44668 -10.22503 -9.88936 -9.70140 -9.32340 -9.14600 -6.83808 0.13844 0.70370 0.79804 1.54273 1.69144 1.90987 2.10015 2.19883 2.45539 2.67860 3.06620 3.53878 3.59595 3.73272 4.04496 4.07475 4.15537 4.28536 4.39209 4.42047 4.65260 4.66965 4.68285 4.77344 4.84723 4.86703 5.00595 5.10822 5.26499 5.29163 5.35298 5.39657 5.42593 5.47011 5.62092 5.76445 5.84437 5.94078 6.36171 6.42620 6.66197 7.14409 7.50133 7.93559 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.004885 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.207907 B = 5730.900626 C = 6619.154296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.020 3.980 3 C -0.245 4.245 4 C 0.544 3.456 5 O -0.534 6.534 6 N -0.651 5.651 7 C 0.375 3.625 8 C -0.321 4.321 9 C -0.029 4.029 10 C -0.297 4.297 11 C 0.258 3.742 12 C -0.511 4.511 13 H 0.067 0.933 14 C 0.015 3.985 15 N -0.830 5.830 16 Si 1.187 2.813 17 H -0.327 1.327 18 H -0.276 1.276 19 H -0.294 1.294 20 N -0.614 5.614 21 C -0.151 4.151 22 C -0.163 4.163 23 C -0.161 4.161 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.416 0.584 29 H 0.168 0.832 30 H 0.142 0.858 31 H 0.113 0.887 32 H 0.280 0.720 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.305 -14.172 2.394 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.019 3.981 3 C -0.265 4.265 4 C 0.337 3.663 5 O -0.413 6.413 6 N -0.295 5.295 7 C 0.144 3.856 8 C -0.345 4.345 9 C -0.053 4.053 10 C -0.319 4.319 11 C 0.133 3.867 12 C -0.544 4.544 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.453 5.453 16 Si 1.020 2.980 17 H -0.261 1.261 18 H -0.204 1.204 19 H -0.222 1.222 20 N -0.341 5.341 21 C -0.169 4.169 22 C -0.200 4.200 23 C -0.198 4.198 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.177 0.823 28 H 0.253 0.747 29 H 0.185 0.815 30 H 0.160 0.840 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.552 -13.220 2.037 23.690 hybrid contribution 2.999 -0.692 0.212 3.085 sum -16.553 -13.912 2.249 21.740 Atomic orbital electron populations 1.21137 0.87793 1.04841 1.04508 1.22214 0.97216 0.92102 0.86618 1.22302 0.89967 1.01035 1.13227 1.19333 0.89630 0.81917 0.75393 1.90496 1.69422 1.31759 1.49637 1.43332 1.03852 1.11023 1.71342 1.18576 0.84226 0.90765 0.92040 1.22537 0.95063 1.00399 1.16463 1.21397 0.94091 0.96945 0.92898 1.21769 0.99719 0.94712 1.15694 1.18444 0.86624 0.93750 0.87889 1.20726 0.95275 0.94187 1.44213 0.91439 1.28587 1.12997 0.90576 0.88011 1.70667 1.13001 1.29725 1.31928 0.81432 0.67914 0.70663 0.78010 1.26091 1.20411 1.22183 1.65966 1.09873 1.27698 1.30541 1.21513 1.01046 0.89958 1.04346 1.23229 0.99664 0.96658 1.00451 1.22848 1.02749 1.02444 0.91797 0.88536 0.89269 0.89312 0.82286 0.74728 0.81539 0.83985 0.86913 0.90887 0.87629 0.86159 0.88237 0.89498 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.56 71.24 0.68 -0.59 16 2 C 0.02 0.38 5.80 -17.61 -0.10 0.28 16 3 C -0.24 -5.50 9.62 23.42 0.23 -5.28 16 4 C 0.54 17.75 7.64 86.55 0.66 18.41 16 5 O -0.53 -19.66 9.68 -4.06 -0.04 -19.70 16 6 N -0.65 -24.15 5.40 -311.70 -1.68 -25.84 16 7 C 0.38 17.33 7.55 133.29 1.01 18.33 16 8 C -0.32 -14.30 8.98 22.72 0.20 -14.10 16 9 C -0.03 -1.26 10.15 22.40 0.23 -1.03 16 10 C -0.30 -14.47 9.83 22.87 0.22 -14.24 16 11 C 0.26 14.05 6.40 40.19 0.26 14.31 16 12 C -0.51 -29.38 9.57 23.47 0.22 -29.16 16 13 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 14 C 0.01 0.82 5.52 85.29 0.47 1.29 16 15 N -0.83 -47.08 13.65 21.84 0.30 -46.78 16 16 Si 1.19 57.59 25.59 68.60 1.76 59.34 16 17 H -0.33 -15.40 7.11 99.48 0.71 -14.69 16 18 H -0.28 -13.06 6.62 99.48 0.66 -12.40 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 20 N -0.61 -31.72 4.54 -186.42 -0.85 -32.57 16 21 C -0.15 -3.31 4.35 -11.54 -0.05 -3.36 16 22 C -0.16 -2.47 9.81 30.59 0.30 -2.17 16 23 C -0.16 -3.11 10.23 30.59 0.31 -2.79 16 24 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.09 0.68 6.24 -2.38 -0.01 0.66 16 26 H 0.09 0.69 8.07 -2.38 -0.02 0.68 16 27 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.42 13.51 8.81 -92.70 -0.82 12.70 16 29 H 0.17 7.15 4.84 -38.20 -0.19 6.96 16 30 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 31 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 32 H 0.28 15.41 8.72 -92.71 -0.81 14.60 16 33 H 0.11 3.08 6.18 -2.39 -0.01 3.06 16 34 H 0.12 1.21 6.24 -2.39 -0.01 1.20 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.06 308.63 4.15 -63.91 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.03 Total: 21.72 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.64 Total: -20.09 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -2.23 Total: -105.18 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.04 Total: -19.70 kcal Atomic # 14 Polarization: 57.59 SS G_CDS: 1.76 Total: 59.34 kcal Total: -68.06 4.15 -63.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.852 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds