Wall clock time and date at job start Mon Mar 30 2020 00:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33022 * 120.00442 * 2 1 4 4 C 1.47055 * 119.99637 * 3.45151 * 3 2 1 5 5 O 1.21607 * 119.99967 * 5.70855 * 4 3 2 6 6 N 1.34784 * 119.99789 * 185.70749 * 4 3 2 7 7 C 1.39157 * 119.99509 * 185.59451 * 6 4 3 8 8 C 1.39698 * 119.58106 * 18.93730 * 7 6 4 9 9 C 1.38643 * 119.49504 * 180.02562 * 8 7 6 10 10 C 1.38353 * 118.67057 * 359.97438 * 9 8 7 11 11 C 1.40578 * 119.13411 * 0.02562 * 10 9 8 12 12 C 1.41332 * 119.78240 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00564 * 6.06415 * 12 11 10 14 14 C 1.40028 * 120.00008 * 186.06718 * 12 11 10 15 15 N 1.30746 * 119.99705 * 6.08603 * 14 12 11 16 16 Si 1.86799 * 120.00314 * 186.08436 * 14 12 11 17 17 H 1.48498 * 109.47275 * 265.00390 * 16 14 12 18 18 H 1.48498 * 109.47067 * 25.01010 * 16 14 12 19 19 H 1.48501 * 109.47129 * 145.00279 * 16 14 12 20 20 N 1.31929 * 119.57044 * 199.21457 * 7 6 4 21 21 C 1.50705 * 119.99938 * 179.97438 * 2 1 3 22 22 C 1.53001 * 117.49744 * 15.64673 * 21 2 1 23 23 C 1.52999 * 117.49859 * 306.98620 * 21 2 1 24 24 H 1.09007 * 109.46786 * 60.90486 * 1 2 3 25 25 H 1.08998 * 109.47113 * 180.89658 * 1 2 3 26 26 H 1.08992 * 109.47405 * 300.90438 * 1 2 3 27 27 H 1.07997 * 120.00407 * 183.45080 * 3 2 1 28 28 H 0.96996 * 119.99490 * 5.59484 * 6 4 3 29 29 H 1.07999 * 120.25412 * 0.04256 * 8 7 6 30 30 H 1.07997 * 120.66632 * 179.97438 * 9 8 7 31 31 H 1.08003 * 120.43206 * 180.02562 * 10 9 8 32 32 H 0.97004 * 119.99979 * 179.97438 * 15 14 12 33 33 H 1.08997 * 115.55208 * 161.30838 * 21 2 1 34 34 H 1.09000 * 117.50198 * 359.97438 * 22 21 2 35 35 H 1.08997 * 117.50318 * 145.01915 * 22 21 2 36 36 H 1.09004 * 117.49680 * 214.97473 * 23 21 2 37 37 H 1.08999 * 117.50164 * 359.97074 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 1.4389 2.4243 0.0767 5 8 0.2345 2.4229 0.2445 6 7 2.1019 3.5922 -0.0390 7 6 1.4291 4.7956 0.1493 8 6 0.2095 4.8047 0.8306 9 6 -0.4595 6.0047 1.0167 10 6 0.1066 7.1645 0.5182 11 6 1.3365 7.0898 -0.1585 12 6 1.9268 8.2661 -0.6737 13 1 1.4851 9.2288 -0.4633 14 6 3.0845 8.1832 -1.4571 15 7 3.5518 7.0146 -1.8113 16 14 3.9612 9.7421 -1.9961 17 1 3.4975 10.1268 -3.3533 18 1 3.6569 10.8369 -1.0400 19 1 5.4264 9.5018 -2.0232 20 7 1.9485 5.9127 -0.3228 21 6 2.2605 -1.3052 0.0006 22 6 1.4819 -2.5705 -0.3649 23 6 1.9066 -2.3247 1.0851 24 1 -0.3633 0.4998 -0.8981 25 1 -0.3633 -1.0275 0.0161 26 1 -0.3634 0.5278 0.8817 27 1 3.2507 1.1528 -0.0563 28 1 3.0478 3.5936 -0.2535 29 1 -0.2088 3.8840 1.2096 30 1 -1.4037 6.0335 1.5402 31 1 -0.3899 8.1149 0.6475 32 1 4.3536 6.9571 -2.3543 33 1 3.3023 -1.2467 -0.3146 34 1 0.4246 -2.4591 -0.6053 35 1 2.0116 -3.3447 -0.9200 36 1 2.7156 -2.9373 1.4832 37 1 1.1292 -2.0513 1.7985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:48 Heat of formation + Delta-G solvation = 48.438807 kcal Electronic energy + Delta-G solvation = -19808.813406 eV Core-core repulsion = 16745.637148 eV Total energy + Delta-G solvation = -3063.176258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92413 -38.34847 -37.48289 -34.34902 -33.24476 -33.06284 -30.39527 -29.39216 -27.55552 -25.55193 -24.23845 -22.60991 -21.76562 -21.52779 -19.82603 -18.51624 -17.50916 -16.76155 -16.46485 -15.71025 -14.93175 -14.80252 -14.62753 -14.33313 -13.65538 -13.46402 -13.11281 -12.87825 -12.75088 -12.23097 -12.03339 -11.92180 -11.64299 -11.33341 -11.25798 -11.06880 -11.02496 -10.77054 -10.62898 -10.62455 -10.12390 -9.76294 -9.19785 -8.91978 -8.72386 -8.02840 -7.65166 -7.04668 -6.43955 -4.48270 1.40559 2.74108 2.97685 3.09579 3.13298 3.25343 3.57875 3.71387 3.85157 3.96070 4.48592 4.64021 4.74075 4.80021 4.86121 5.07614 5.34806 5.38727 5.57991 5.69929 5.85776 5.87776 5.93316 5.95127 6.13113 6.20690 6.47674 6.52632 6.58452 6.80805 6.84843 6.89921 7.15676 7.51772 7.54694 7.88820 7.94798 8.16395 8.33125 8.70201 8.77225 8.99608 10.06326 10.32455 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.003866 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.094521 B = 7240.224579 C = 8021.897985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.009 4.009 3 C -0.216 4.216 4 C 0.544 3.456 5 O -0.523 6.523 6 N -0.642 5.642 7 C 0.358 3.642 8 C -0.312 4.312 9 C -0.050 4.050 10 C -0.290 4.290 11 C 0.280 3.720 12 C -0.437 4.437 13 H 0.085 0.915 14 C 0.073 3.927 15 N -0.724 5.724 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.261 1.261 19 H -0.276 1.276 20 N -0.509 5.509 21 C -0.129 4.129 22 C -0.175 4.175 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.407 0.593 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.271 0.729 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -14.440 2.022 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.011 4.011 3 C -0.238 4.238 4 C 0.333 3.667 5 O -0.401 6.401 6 N -0.285 5.285 7 C 0.123 3.877 8 C -0.337 4.337 9 C -0.075 4.075 10 C -0.313 4.313 11 C 0.154 3.846 12 C -0.469 4.469 13 H 0.103 0.897 14 C -0.152 4.152 15 N -0.346 5.346 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.201 1.201 20 N -0.228 5.228 21 C -0.148 4.148 22 C -0.212 4.212 23 C -0.203 4.203 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.144 0.856 28 H 0.242 0.758 29 H 0.149 0.851 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.019 -14.577 1.580 14.698 hybrid contribution 0.349 0.813 -0.061 0.886 sum 1.368 -13.765 1.518 13.916 Atomic orbital electron populations 1.21110 0.90733 1.00972 1.04847 1.21713 0.96160 0.92147 0.91108 1.22291 1.00138 0.91680 1.09644 1.18396 0.87173 0.83824 0.77271 1.90675 1.14127 1.87024 1.48294 1.43102 1.13483 1.04234 1.67718 1.18500 0.90149 0.86209 0.92848 1.21616 0.99802 0.99162 1.13084 1.20811 0.97307 0.92722 0.96637 1.21712 1.00305 0.97217 1.12038 1.18171 0.87877 0.89948 0.88624 1.19548 1.07846 0.92983 1.26559 0.89691 1.26028 0.97093 0.97090 0.94963 1.70085 1.17170 1.24609 1.22764 0.86331 0.78737 0.82209 0.79615 1.19595 1.18496 1.20138 1.68034 1.35155 0.96589 1.23023 1.21255 0.99544 0.88378 1.05581 1.23106 1.01349 0.98439 0.98283 1.22986 1.03824 1.01381 0.92088 0.90205 0.92970 0.89060 0.85598 0.75805 0.85102 0.88380 0.88265 0.91774 0.86755 0.87905 0.88403 0.88303 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.07 36.01 0.29 -1.28 16 2 C -0.01 -0.12 5.83 -101.16 -0.59 -0.71 16 3 C -0.22 -3.08 9.67 -37.82 -0.37 -3.44 16 4 C 0.54 10.25 7.54 -12.68 -0.10 10.15 16 5 O -0.52 -10.99 9.95 5.27 0.05 -10.94 16 6 N -0.64 -13.41 5.40 -12.49 -0.07 -13.48 16 7 C 0.36 9.08 7.51 -155.06 -1.16 7.92 16 8 C -0.31 -7.76 8.82 -38.89 -0.34 -8.10 16 9 C -0.05 -1.21 10.15 -39.39 -0.40 -1.61 16 10 C -0.29 -7.42 9.83 -38.66 -0.38 -7.80 16 11 C 0.28 7.86 6.53 -85.00 -0.56 7.30 16 12 C -0.44 -11.83 9.13 -37.74 -0.34 -12.18 16 13 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 14 C 0.07 1.86 5.48 -17.34 -0.10 1.76 16 15 N -0.72 -19.14 11.53 55.55 0.64 -18.50 16 16 Si 0.91 18.63 29.56 -169.99 -5.03 13.61 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 N -0.51 -14.19 7.96 -10.27 -0.08 -14.27 16 21 C -0.13 -1.25 6.00 -91.77 -0.55 -1.80 16 22 C -0.18 -1.40 9.80 -26.69 -0.26 -1.67 16 23 C -0.17 -1.35 10.08 -26.69 -0.27 -1.62 16 24 H 0.08 1.17 7.64 -51.92 -0.40 0.77 16 25 H 0.05 0.54 5.67 -51.93 -0.29 0.24 16 26 H 0.09 1.35 6.80 -51.93 -0.35 1.00 16 27 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.41 7.65 8.81 -40.82 -0.36 7.29 16 29 H 0.13 3.17 5.33 -52.50 -0.28 2.89 16 30 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 32 H 0.27 6.47 8.29 -40.82 -0.34 6.14 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.83 6.21 -51.93 -0.32 0.50 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -31.06 313.53 -9.39 -40.45 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -4.51 Total: 11.47 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -5.12 Total: -13.08 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.49 Total: -46.24 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.05 Total: -10.94 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.06 -9.39 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.886 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds