Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33022 * 120.00442 * 2 1 4 4 C 1.47055 * 119.99637 * 3.45151 * 3 2 1 5 5 O 1.21607 * 119.99967 * 5.70855 * 4 3 2 6 6 N 1.34784 * 119.99789 * 185.70749 * 4 3 2 7 7 C 1.39157 * 119.99509 * 185.59451 * 6 4 3 8 8 C 1.39698 * 119.58106 * 18.93730 * 7 6 4 9 9 C 1.38643 * 119.49504 * 180.02562 * 8 7 6 10 10 C 1.38353 * 118.67057 * 359.97438 * 9 8 7 11 11 C 1.40578 * 119.13411 * 0.02562 * 10 9 8 12 12 C 1.41332 * 119.78240 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00564 * 6.06415 * 12 11 10 14 14 C 1.40028 * 120.00008 * 186.06718 * 12 11 10 15 15 N 1.30746 * 119.99705 * 6.08603 * 14 12 11 16 16 Si 1.86799 * 120.00314 * 186.08436 * 14 12 11 17 17 H 1.48498 * 109.47275 * 265.00390 * 16 14 12 18 18 H 1.48498 * 109.47067 * 25.01010 * 16 14 12 19 19 H 1.48501 * 109.47129 * 145.00279 * 16 14 12 20 20 N 1.31929 * 119.57044 * 199.21457 * 7 6 4 21 21 C 1.50705 * 119.99938 * 179.97438 * 2 1 3 22 22 C 1.53001 * 117.49744 * 15.64673 * 21 2 1 23 23 C 1.52999 * 117.49859 * 306.98620 * 21 2 1 24 24 H 1.09007 * 109.46786 * 60.90486 * 1 2 3 25 25 H 1.08998 * 109.47113 * 180.89658 * 1 2 3 26 26 H 1.08992 * 109.47405 * 300.90438 * 1 2 3 27 27 H 1.07997 * 120.00407 * 183.45080 * 3 2 1 28 28 H 0.96996 * 119.99490 * 5.59484 * 6 4 3 29 29 H 1.07999 * 120.25412 * 0.04256 * 8 7 6 30 30 H 1.07997 * 120.66632 * 179.97438 * 9 8 7 31 31 H 1.08003 * 120.43206 * 180.02562 * 10 9 8 32 32 H 0.97004 * 119.99979 * 179.97438 * 15 14 12 33 33 H 1.08997 * 115.55208 * 161.30838 * 21 2 1 34 34 H 1.09000 * 117.50198 * 359.97438 * 22 21 2 35 35 H 1.08997 * 117.50318 * 145.01915 * 22 21 2 36 36 H 1.09004 * 117.49680 * 214.97473 * 23 21 2 37 37 H 1.08999 * 117.50164 * 359.97074 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 1.4389 2.4243 0.0767 5 8 0.2345 2.4229 0.2445 6 7 2.1019 3.5922 -0.0390 7 6 1.4291 4.7956 0.1493 8 6 0.2095 4.8047 0.8306 9 6 -0.4595 6.0047 1.0167 10 6 0.1066 7.1645 0.5182 11 6 1.3365 7.0898 -0.1585 12 6 1.9268 8.2661 -0.6737 13 1 1.4851 9.2288 -0.4633 14 6 3.0845 8.1832 -1.4571 15 7 3.5518 7.0146 -1.8113 16 14 3.9612 9.7421 -1.9961 17 1 3.4975 10.1268 -3.3533 18 1 3.6569 10.8369 -1.0400 19 1 5.4264 9.5018 -2.0232 20 7 1.9485 5.9127 -0.3228 21 6 2.2605 -1.3052 0.0006 22 6 1.4819 -2.5705 -0.3649 23 6 1.9066 -2.3247 1.0851 24 1 -0.3633 0.4998 -0.8981 25 1 -0.3633 -1.0275 0.0161 26 1 -0.3634 0.5278 0.8817 27 1 3.2507 1.1528 -0.0563 28 1 3.0478 3.5936 -0.2535 29 1 -0.2088 3.8840 1.2096 30 1 -1.4037 6.0335 1.5402 31 1 -0.3899 8.1149 0.6475 32 1 4.3536 6.9571 -2.3543 33 1 3.3023 -1.2467 -0.3146 34 1 0.4246 -2.4591 -0.6053 35 1 2.0116 -3.3447 -0.9200 36 1 2.7156 -2.9373 1.4832 37 1 1.1292 -2.0513 1.7985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = 31.096526 kcal Electronic energy + Delta-G solvation = -19809.565424 eV Core-core repulsion = 16745.637148 eV Total energy + Delta-G solvation = -3063.928276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49854 -39.78151 -38.74959 -36.07252 -35.10471 -34.15956 -32.35393 -31.23233 -28.80053 -27.43805 -25.46238 -23.55031 -23.27866 -23.15316 -21.40359 -19.68422 -19.35897 -18.22674 -17.91617 -16.92029 -16.56180 -16.45041 -16.15494 -15.76546 -15.32439 -14.89090 -14.45957 -14.43743 -14.02395 -13.83252 -13.72824 -13.03885 -12.93014 -12.78875 -12.66549 -12.56751 -12.32026 -12.13157 -11.88323 -11.86807 -11.54464 -11.32092 -11.02547 -10.38814 -10.02897 -9.88635 -9.64031 -8.94895 -8.35526 -6.51467 0.19323 0.91202 1.12760 1.42134 1.53334 1.57753 2.14688 2.23721 2.25291 2.87468 3.03923 3.52342 3.85257 3.91214 3.95302 4.07261 4.14274 4.24654 4.35124 4.62368 4.67095 4.78510 4.83397 4.87043 4.92870 4.96573 5.01951 5.11908 5.14009 5.23862 5.28078 5.48627 5.52504 5.63828 5.68926 5.92316 6.07960 6.26474 6.54243 6.77924 6.93018 7.25400 8.08753 8.43924 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.003866 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.094521 B = 7240.224579 C = 8021.897985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.237 4.237 4 C 0.540 3.460 5 O -0.550 6.550 6 N -0.644 5.644 7 C 0.347 3.653 8 C -0.326 4.326 9 C -0.048 4.048 10 C -0.310 4.310 11 C 0.245 3.755 12 C -0.468 4.468 13 H 0.092 0.908 14 C 0.027 3.973 15 N -0.757 5.757 16 Si 0.990 3.010 17 H -0.264 1.264 18 H -0.256 1.256 19 H -0.267 1.267 20 N -0.537 5.537 21 C -0.147 4.147 22 C -0.166 4.166 23 C -0.158 4.158 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.153 0.847 28 H 0.414 0.586 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.280 0.720 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -15.785 1.832 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.012 3.988 3 C -0.258 4.258 4 C 0.332 3.668 5 O -0.430 6.430 6 N -0.288 5.288 7 C 0.111 3.889 8 C -0.351 4.351 9 C -0.073 4.073 10 C -0.332 4.332 11 C 0.119 3.881 12 C -0.499 4.499 13 H 0.110 0.890 14 C -0.195 4.195 15 N -0.379 5.379 16 Si 0.810 3.190 17 H -0.188 1.188 18 H -0.179 1.179 19 H -0.191 1.191 20 N -0.257 5.257 21 C -0.165 4.165 22 C -0.202 4.202 23 C -0.194 4.194 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.170 0.830 28 H 0.250 0.750 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.953 -15.961 1.399 16.141 hybrid contribution -0.038 1.052 0.018 1.053 sum 1.915 -14.909 1.417 15.098 Atomic orbital electron populations 1.21074 0.91422 1.02303 1.02947 1.22037 0.95948 0.93289 0.87534 1.22200 1.01175 0.89571 1.12828 1.19215 0.87142 0.84499 0.75910 1.90644 1.15489 1.87403 1.49511 1.43185 1.13836 1.03569 1.68180 1.18902 0.90660 0.87074 0.92218 1.21848 1.00076 0.99715 1.13457 1.21183 0.98259 0.91965 0.95875 1.21899 1.00177 0.98442 1.12725 1.18706 0.89098 0.90697 0.89586 1.19944 1.09236 0.93131 1.27634 0.88984 1.26986 0.97269 1.00867 0.94376 1.70166 1.17723 1.27032 1.22979 0.85082 0.77447 0.77290 0.79156 1.18849 1.17942 1.19136 1.68064 1.36075 0.97227 1.24306 1.21331 1.00190 0.87167 1.07854 1.23226 1.01250 0.97382 0.98375 1.23100 1.04172 1.00157 0.92006 0.92090 0.89999 0.91006 0.82980 0.74952 0.84682 0.85099 0.86829 0.90927 0.85274 0.88025 0.86448 0.86351 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.07 71.24 0.58 -2.53 16 2 C 0.01 0.33 5.83 -17.61 -0.10 0.23 16 3 C -0.24 -6.58 9.67 23.42 0.23 -6.35 16 4 C 0.54 20.73 7.54 86.55 0.65 21.38 16 5 O -0.55 -23.78 9.95 -4.05 -0.04 -23.82 16 6 N -0.64 -27.66 5.40 -311.68 -1.68 -29.34 16 7 C 0.35 18.20 7.51 133.29 1.00 19.20 16 8 C -0.33 -16.62 8.82 22.72 0.20 -16.42 16 9 C -0.05 -2.36 10.15 22.39 0.23 -2.13 16 10 C -0.31 -16.21 9.83 22.87 0.22 -15.98 16 11 C 0.25 14.19 6.53 40.19 0.26 14.45 16 12 C -0.47 -25.86 9.13 23.47 0.21 -25.64 16 13 H 0.09 4.74 7.85 -2.91 -0.02 4.71 16 14 C 0.03 1.37 5.48 85.29 0.47 1.84 16 15 N -0.76 -40.62 11.53 21.84 0.25 -40.37 16 16 Si 0.99 38.10 29.56 68.60 2.03 40.13 16 17 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 19 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 20 N -0.54 -30.94 7.96 -186.41 -1.48 -32.42 16 21 C -0.15 -2.41 6.00 -11.54 -0.07 -2.48 16 22 C -0.17 -2.08 9.80 30.62 0.30 -1.78 16 23 C -0.16 -2.04 10.08 30.62 0.31 -1.73 16 24 H 0.06 1.81 7.64 -2.38 -0.02 1.79 16 25 H 0.08 1.55 5.67 -2.39 -0.01 1.54 16 26 H 0.07 2.15 6.80 -2.39 -0.02 2.14 16 27 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.41 16.05 8.81 -92.71 -0.82 15.24 16 29 H 0.14 6.71 5.33 -3.16 -0.02 6.70 16 30 H 0.13 5.35 8.06 -2.91 -0.02 5.32 16 31 H 0.11 5.41 8.06 -2.91 -0.02 5.39 16 32 H 0.28 13.46 8.29 -92.71 -0.77 12.69 16 33 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 1.31 6.21 -2.39 -0.01 1.30 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -69.22 313.53 3.84 -65.38 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.28 Total: 38.39 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 4.49 Total: -17.94 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -2.92 Total: -102.13 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.04 Total: -23.82 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -69.22 3.84 -65.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.475 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds