Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46958 * 2 1 4 4 N 1.46900 * 109.47085 * 119.99717 * 2 1 3 5 5 C 1.46906 * 110.99938 * 275.00163 * 4 2 1 6 6 C 1.50696 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.38639 * 119.74723 * 89.99878 * 6 5 4 8 8 C 1.37622 * 120.24860 * 180.27284 * 7 6 5 9 9 C 1.40715 * 119.74171 * 359.52374 * 8 7 6 10 10 C 1.41399 * 120.24183 * 180.22515 * 9 8 7 11 11 H 1.07996 * 120.00044 * 204.52621 * 10 9 8 12 12 C 1.39950 * 119.99773 * 24.53568 * 10 9 8 13 13 N 1.30821 * 119.99991 * 17.71280 * 12 10 9 14 14 Si 1.86800 * 119.99756 * 197.70913 * 12 10 9 15 15 H 1.48502 * 109.46794 * 89.99841 * 14 12 10 16 16 H 1.48499 * 109.47177 * 209.99507 * 14 12 10 17 17 H 1.48492 * 109.47228 * 330.00168 * 14 12 10 18 18 C 1.40715 * 119.51175 * 0.47555 * 9 8 7 19 19 C 1.37615 * 119.74353 * 359.75047 * 18 9 8 20 20 C 1.50694 * 109.46885 * 239.99748 * 2 1 3 21 21 N 1.30265 * 125.61669 * 284.68926 * 20 2 1 22 22 C 1.34482 * 108.69495 * 179.84027 * 21 20 2 23 23 C 1.34324 * 107.67351 * 0.42909 * 22 21 20 24 24 O 1.33966 * 125.62146 * 105.00235 * 20 2 1 25 25 H 1.09001 * 109.47206 * 300.00302 * 1 2 3 26 26 H 1.08996 * 109.47258 * 60.00302 * 1 2 3 27 27 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.00892 * 111.00196 * 151.04605 * 4 2 1 29 29 H 1.09001 * 109.47295 * 59.99652 * 5 4 2 30 30 H 1.09000 * 109.46602 * 299.99827 * 5 4 2 31 31 H 1.08000 * 119.87572 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.12750 * 179.72105 * 8 7 6 33 33 H 0.97005 * 119.99803 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.12426 * 179.73134 * 18 9 8 35 35 H 1.08002 * 119.87199 * 180.02562 * 19 18 9 36 36 H 1.08005 * 126.16148 * 180.16994 * 22 21 20 37 37 H 1.08000 * 126.44807 * 179.77041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5216 3.5561 7 6 3.9484 -0.5711 3.8146 8 6 4.4212 -1.2526 4.9128 9 6 3.5164 -1.8922 5.7802 10 6 3.9902 -2.5914 6.9142 11 1 3.3985 -3.3854 7.3452 12 6 5.2259 -2.2544 7.4781 13 7 5.7798 -1.1025 7.1992 14 14 6.0843 -3.4493 8.6292 15 1 6.9683 -4.3461 7.8421 16 1 6.8980 -2.6909 9.6129 17 1 5.0689 -4.2607 9.3472 18 6 2.1370 -1.8354 5.5077 19 6 1.6872 -1.1520 4.4012 20 6 2.0323 -0.7104 -1.2304 21 7 2.0319 -1.9999 -1.4151 22 6 2.5511 -2.2618 -2.6277 23 6 2.8848 -1.0887 -3.1905 24 8 2.5581 -0.1204 -2.3121 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.9172 -1.1204 1.0288 29 1 1.0870 0.6165 2.5525 30 1 2.7588 1.0463 2.1181 31 1 4.6407 -0.0770 3.1491 32 1 5.4823 -1.2937 5.1098 33 1 6.6365 -0.8690 7.5899 34 1 1.4342 -2.3264 6.1644 35 1 0.6290 -1.1067 4.1904 36 1 2.6806 -3.2396 -3.0678 37 1 3.3306 -0.9479 -4.1640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886539097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = 39.807748 kcal Electronic energy + Delta-G solvation = -19588.421547 eV Core-core repulsion = 16524.871018 eV Total energy + Delta-G solvation = -3063.550529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.38226 -37.92915 -36.53779 -34.70263 -33.79262 -31.72101 -29.64075 -29.21399 -28.83487 -26.25159 -24.09881 -22.93129 -22.37602 -20.96659 -20.47847 -19.85500 -17.67781 -17.26850 -16.66557 -15.94092 -15.56954 -15.21186 -14.37608 -14.19598 -13.94980 -13.54358 -13.42222 -13.23326 -12.60555 -12.30960 -12.13762 -11.99635 -11.90117 -11.49307 -11.34512 -11.23060 -10.99555 -10.92677 -10.52390 -10.50072 -10.37267 -9.56487 -9.36649 -9.12268 -9.00514 -8.19427 -7.42492 -7.27950 -6.75173 -4.33367 1.35342 2.53266 2.66182 2.78704 3.07784 3.11905 3.12152 3.20846 3.94317 3.96239 4.38045 4.70872 4.84003 4.95581 5.10059 5.19930 5.55920 5.66032 5.72830 5.74958 5.80818 5.85375 5.91539 6.16532 6.26840 6.30138 6.39991 6.44452 6.97078 7.09299 7.23176 7.29143 7.40303 7.59371 7.64994 7.74461 7.90961 8.08190 8.15756 8.32867 8.66337 8.91787 9.00221 10.19370 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.003444 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.380278 B = 8128.020481 C = 8528.032853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 H 0.066 0.934 4 N -0.663 5.663 5 C 0.124 3.876 6 C -0.215 4.215 7 C -0.094 4.094 8 C -0.166 4.166 9 C 0.114 3.886 10 C -0.462 4.462 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.793 5.793 14 Si 0.908 3.092 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.229 4.229 19 C -0.065 4.065 20 C 0.189 3.811 21 N -0.458 5.458 22 C -0.045 4.045 23 C -0.084 4.084 24 O -0.207 6.207 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.348 0.652 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.280 0.720 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.183 0.817 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 2.695 -15.257 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.070 3.930 3 H 0.083 0.917 4 N -0.298 5.298 5 C -0.003 4.003 6 C -0.217 4.217 7 C -0.113 4.113 8 C -0.186 4.186 9 C 0.111 3.889 10 C -0.492 4.492 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.248 4.248 19 C -0.084 4.084 20 C -0.019 4.019 21 N -0.187 5.187 22 C -0.183 4.183 23 C -0.155 4.155 24 O -0.093 6.093 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.167 0.833 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.200 0.800 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.530 2.231 -14.585 15.434 hybrid contribution 1.686 0.383 -0.433 1.782 sum -2.843 2.614 -15.018 15.507 Atomic orbital electron populations 1.21797 0.92004 1.03689 1.01783 1.19919 0.96603 0.94324 0.82137 0.91677 1.60827 1.34726 1.32593 1.01618 1.20689 0.99363 0.91895 0.88380 1.18801 0.93458 1.10547 0.98898 1.20519 0.93695 0.99665 0.97427 1.21267 0.99765 1.02863 0.94672 1.17632 0.90676 0.89255 0.91329 1.19628 1.02316 1.16565 1.10697 0.90422 1.25915 0.96933 0.94741 0.96575 1.69832 1.16089 1.18682 1.37277 0.86320 0.79700 0.80966 0.79780 1.19287 1.20364 1.18597 1.20978 0.95254 1.08091 1.00493 1.20325 0.96721 0.96853 0.94483 1.26590 0.97448 0.87834 0.90000 1.70538 1.17959 1.13715 1.16454 1.23487 1.02781 0.99956 0.92119 1.25017 1.06626 0.86788 0.97078 1.84459 1.60732 1.38992 1.25101 0.90888 0.92682 0.90816 0.83262 0.91460 0.95939 0.89990 0.86586 0.90932 0.89064 0.89333 0.79995 0.77000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.40 37.16 0.35 -1.24 16 2 C 0.18 2.42 3.16 -68.87 -0.22 2.20 16 3 H 0.07 0.79 7.80 -51.93 -0.40 0.39 16 4 N -0.66 -10.74 6.28 -109.22 -0.69 -11.43 16 5 C 0.12 2.11 5.60 -4.97 -0.03 2.08 16 6 C -0.22 -4.62 5.41 -104.33 -0.56 -5.19 16 7 C -0.09 -2.18 9.67 -39.66 -0.38 -2.56 16 8 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 9 C 0.11 3.06 5.57 -106.82 -0.60 2.46 16 10 C -0.46 -12.40 9.06 -37.74 -0.34 -12.74 16 11 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 12 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 13 N -0.79 -20.60 10.95 55.55 0.61 -19.99 16 14 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 19 C -0.06 -1.46 9.67 -39.67 -0.38 -1.85 16 20 C 0.19 2.65 6.84 -12.95 -0.09 2.56 16 21 N -0.46 -6.89 11.28 -11.10 -0.13 -7.01 16 22 C -0.04 -0.52 11.89 -17.77 -0.21 -0.73 16 23 C -0.08 -0.83 12.18 29.35 0.36 -0.48 16 24 O -0.21 -2.62 10.78 5.35 0.06 -2.56 16 25 H 0.07 0.81 7.45 -51.93 -0.39 0.42 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.35 6.05 8.34 -39.30 -0.33 5.72 16 29 H 0.07 1.06 7.37 -51.93 -0.38 0.68 16 30 H 0.02 0.36 7.99 -51.93 -0.42 -0.05 16 31 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 33 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 34 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -29.34 320.17 -8.02 -37.36 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.75 Total: 9.41 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -2.92 Total: -24.37 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.20 Total: -38.43 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.06 Total: -2.56 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.34 -8.02 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886539097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.165 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds