Wall clock time and date at job start Mon Mar 30 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46958 * 2 1 4 4 N 1.46900 * 109.47085 * 119.99717 * 2 1 3 5 5 C 1.46906 * 110.99938 * 275.00163 * 4 2 1 6 6 C 1.50696 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.38639 * 119.74723 * 89.99878 * 6 5 4 8 8 C 1.37622 * 120.24860 * 180.27284 * 7 6 5 9 9 C 1.40715 * 119.74171 * 359.52374 * 8 7 6 10 10 C 1.41399 * 120.24183 * 180.22515 * 9 8 7 11 11 H 1.07996 * 120.00044 * 204.52621 * 10 9 8 12 12 C 1.39950 * 119.99773 * 24.53568 * 10 9 8 13 13 N 1.30821 * 119.99991 * 17.71280 * 12 10 9 14 14 Si 1.86800 * 119.99756 * 197.70913 * 12 10 9 15 15 H 1.48502 * 109.46794 * 89.99841 * 14 12 10 16 16 H 1.48499 * 109.47177 * 209.99507 * 14 12 10 17 17 H 1.48492 * 109.47228 * 330.00168 * 14 12 10 18 18 C 1.40715 * 119.51175 * 0.47555 * 9 8 7 19 19 C 1.37615 * 119.74353 * 359.75047 * 18 9 8 20 20 C 1.50694 * 109.46885 * 239.99748 * 2 1 3 21 21 N 1.30265 * 125.61669 * 284.68926 * 20 2 1 22 22 C 1.34482 * 108.69495 * 179.84027 * 21 20 2 23 23 C 1.34324 * 107.67351 * 0.42909 * 22 21 20 24 24 O 1.33966 * 125.62146 * 105.00235 * 20 2 1 25 25 H 1.09001 * 109.47206 * 300.00302 * 1 2 3 26 26 H 1.08996 * 109.47258 * 60.00302 * 1 2 3 27 27 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.00892 * 111.00196 * 151.04605 * 4 2 1 29 29 H 1.09001 * 109.47295 * 59.99652 * 5 4 2 30 30 H 1.09000 * 109.46602 * 299.99827 * 5 4 2 31 31 H 1.08000 * 119.87572 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.12750 * 179.72105 * 8 7 6 33 33 H 0.97005 * 119.99803 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.12426 * 179.73134 * 18 9 8 35 35 H 1.08002 * 119.87199 * 180.02562 * 19 18 9 36 36 H 1.08005 * 126.16148 * 180.16994 * 22 21 20 37 37 H 1.08000 * 126.44807 * 179.77041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5216 3.5561 7 6 3.9484 -0.5711 3.8146 8 6 4.4212 -1.2526 4.9128 9 6 3.5164 -1.8922 5.7802 10 6 3.9902 -2.5914 6.9142 11 1 3.3985 -3.3854 7.3452 12 6 5.2259 -2.2544 7.4781 13 7 5.7798 -1.1025 7.1992 14 14 6.0843 -3.4493 8.6292 15 1 6.9683 -4.3461 7.8421 16 1 6.8980 -2.6909 9.6129 17 1 5.0689 -4.2607 9.3472 18 6 2.1370 -1.8354 5.5077 19 6 1.6872 -1.1520 4.4012 20 6 2.0323 -0.7104 -1.2304 21 7 2.0319 -1.9999 -1.4151 22 6 2.5511 -2.2618 -2.6277 23 6 2.8848 -1.0887 -3.1905 24 8 2.5581 -0.1204 -2.3121 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.9172 -1.1204 1.0288 29 1 1.0870 0.6165 2.5525 30 1 2.7588 1.0463 2.1181 31 1 4.6407 -0.0770 3.1491 32 1 5.4823 -1.2937 5.1098 33 1 6.6365 -0.8690 7.5899 34 1 1.4342 -2.3264 6.1644 35 1 0.6290 -1.1067 4.1904 36 1 2.6806 -3.2396 -3.0678 37 1 3.3306 -0.9479 -4.1640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886539097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:37 Heat of formation + Delta-G solvation = 19.809506 kcal Electronic energy + Delta-G solvation = -19589.288736 eV Core-core repulsion = 16524.871018 eV Total energy + Delta-G solvation = -3064.417718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.28980 -39.63406 -37.87155 -35.76704 -35.48871 -33.15888 -31.21318 -30.93297 -29.92116 -27.86589 -25.44098 -24.16195 -23.36823 -22.85411 -21.61124 -21.48035 -19.19949 -18.63682 -17.60512 -17.30357 -16.85079 -16.51988 -15.90981 -15.64144 -15.33935 -15.17385 -14.74361 -14.27194 -14.06474 -13.78776 -13.65614 -13.39735 -13.15987 -13.07404 -12.77906 -12.63834 -12.35818 -12.31345 -12.19195 -12.02262 -11.48743 -11.37583 -11.23772 -10.99732 -9.87607 -9.47588 -9.29383 -9.15922 -8.62956 -6.32074 0.47428 0.94992 1.19112 1.37772 1.50170 1.50973 1.72230 1.75581 2.21265 2.70659 3.06249 3.35382 3.82081 3.94873 4.11434 4.19247 4.28612 4.32717 4.39670 4.61177 4.68714 4.70836 4.76165 4.89633 4.93144 4.99819 5.07214 5.17787 5.28225 5.37723 5.40042 5.50139 5.73652 5.93300 6.09829 6.13140 6.20633 6.35899 6.42607 6.72864 6.81750 6.96354 7.06671 8.34091 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.003444 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.380278 B = 8128.020481 C = 8528.032853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.182 3.818 3 H 0.083 0.917 4 N -0.673 5.673 5 C 0.131 3.869 6 C -0.201 4.201 7 C -0.098 4.098 8 C -0.191 4.191 9 C 0.080 3.920 10 C -0.504 4.504 11 H 0.073 0.927 12 C 0.035 3.965 13 N -0.826 5.826 14 Si 0.982 3.018 15 H -0.263 1.263 16 H -0.266 1.266 17 H -0.259 1.259 18 C -0.246 4.246 19 C -0.069 4.069 20 C 0.170 3.830 21 N -0.494 5.494 22 C -0.072 4.072 23 C -0.063 4.063 24 O -0.214 6.214 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.339 0.661 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.287 0.713 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.205 0.795 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 3.374 -17.094 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.072 3.928 3 H 0.100 0.900 4 N -0.306 5.306 5 C 0.004 3.996 6 C -0.202 4.202 7 C -0.117 4.117 8 C -0.211 4.211 9 C 0.078 3.922 10 C -0.533 4.533 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.452 5.452 14 Si 0.802 3.198 15 H -0.188 1.188 16 H -0.191 1.191 17 H -0.183 1.183 18 C -0.266 4.266 19 C -0.087 4.087 20 C -0.038 4.038 21 N -0.224 5.224 22 C -0.210 4.210 23 C -0.133 4.133 24 O -0.100 6.100 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.222 0.778 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.817 2.926 -16.440 17.380 hybrid contribution 1.700 0.223 -0.087 1.717 sum -3.117 3.149 -16.528 17.111 Atomic orbital electron populations 1.21766 0.90891 1.02885 1.03157 1.19967 0.97308 0.94634 0.80879 0.89979 1.60711 1.34202 1.32945 1.02757 1.20614 1.00522 0.91593 0.86891 1.19276 0.92572 1.08606 0.99771 1.20787 0.95148 0.99039 0.96742 1.21239 0.98938 1.04743 0.96183 1.17970 0.91825 0.90363 0.92069 1.19853 1.04047 1.17575 1.11874 0.90925 1.26744 0.96972 0.96201 0.98007 1.69881 1.16696 1.20103 1.38512 0.85213 0.78409 0.78471 0.77658 1.18805 1.19087 1.18268 1.21190 0.94731 1.08923 1.01709 1.20663 0.98413 0.95984 0.93673 1.26558 0.98682 0.87764 0.90750 1.70484 1.18949 1.14562 1.18374 1.23976 1.03614 1.01830 0.91545 1.25926 1.04124 0.85613 0.97614 1.84461 1.60630 1.39697 1.25213 0.90026 0.90777 0.92655 0.84316 0.89518 0.94552 0.87974 0.88446 0.90210 0.88800 0.86580 0.77803 0.72414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.40 71.98 0.68 -2.07 16 2 C 0.18 4.49 3.16 44.17 0.14 4.63 16 3 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 4 N -0.67 -20.60 6.28 -499.46 -3.13 -23.74 16 5 C 0.13 4.14 5.60 85.55 0.48 4.62 16 6 C -0.20 -8.38 5.41 -19.68 -0.11 -8.49 16 7 C -0.10 -4.56 9.67 22.22 0.21 -4.34 16 8 C -0.19 -10.33 8.70 22.73 0.20 -10.14 16 9 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 10 C -0.50 -28.17 9.06 23.46 0.21 -27.96 16 11 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 12 C 0.04 1.83 5.14 85.26 0.44 2.27 16 13 N -0.83 -44.19 10.95 21.83 0.24 -43.95 16 14 Si 0.98 39.27 29.59 68.60 2.03 41.30 16 15 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 16 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 C -0.25 -12.48 9.80 22.73 0.22 -12.26 16 19 C -0.07 -3.04 9.67 22.21 0.21 -2.83 16 20 C 0.17 4.49 6.84 88.34 0.60 5.09 16 21 N -0.49 -14.34 11.28 -303.82 -3.43 -17.76 16 22 C -0.07 -1.52 11.89 83.39 0.99 -0.53 16 23 C -0.06 -1.05 12.18 66.93 0.81 -0.24 16 24 O -0.21 -4.91 10.78 -3.77 -0.04 -4.95 16 25 H 0.08 1.58 7.45 -2.39 -0.02 1.56 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.34 11.43 8.34 -89.70 -0.75 10.68 16 29 H 0.09 2.44 7.37 -2.39 -0.02 2.42 16 30 H 0.04 1.06 7.99 -2.39 -0.02 1.05 16 31 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 33 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 34 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.26 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -66.03 320.17 0.98 -65.04 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.33 Total: 31.94 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 4.98 Total: -47.88 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -6.32 Total: -85.45 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.04 Total: -4.95 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -66.03 0.98 -65.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886539097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.852 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds