Wall clock time and date at job start Mon Mar 30 2020 01:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 N 1.46900 * 109.47203 * 240.00029 * 2 1 3 5 5 C 1.46902 * 110.99875 * 85.00060 * 4 2 1 6 6 C 1.50699 * 109.47002 * 180.02562 * 5 4 2 7 7 C 1.38636 * 119.75289 * 89.99736 * 6 5 4 8 8 C 1.37615 * 120.25185 * 179.70401 * 7 6 5 9 9 C 1.40720 * 119.74367 * 0.27407 * 8 7 6 10 10 C 1.41400 * 120.24537 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99966 * 204.38968 * 10 9 8 12 12 C 1.39950 * 119.99539 * 24.39535 * 10 9 8 13 13 N 1.30819 * 120.00082 * 17.85436 * 12 10 9 14 14 Si 1.86800 * 119.99528 * 197.85557 * 12 10 9 15 15 H 1.48492 * 109.47384 * 59.99611 * 14 12 10 16 16 H 1.48500 * 109.46729 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46863 * 299.99545 * 14 12 10 18 18 C 1.40718 * 119.51008 * 0.02562 * 9 8 7 19 19 C 1.37614 * 119.74514 * 359.97438 * 18 9 8 20 20 C 1.50705 * 109.46973 * 119.99986 * 2 1 3 21 21 N 1.30252 * 125.61742 * 254.99954 * 20 2 1 22 22 C 1.34479 * 108.69662 * 179.97438 * 21 20 2 23 23 C 1.34323 * 107.67138 * 359.97438 * 22 21 20 24 24 O 1.33969 * 125.61671 * 74.69055 * 20 2 1 25 25 H 1.08992 * 109.47188 * 299.99930 * 1 2 3 26 26 H 1.09000 * 109.46668 * 60.00073 * 1 2 3 27 27 H 1.08994 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.00898 * 110.99646 * 208.95791 * 4 2 1 29 29 H 1.08995 * 109.47008 * 59.99923 * 5 4 2 30 30 H 1.09000 * 109.47344 * 299.99458 * 5 4 2 31 31 H 1.08001 * 119.87542 * 359.97438 * 7 6 5 32 32 H 1.08000 * 120.13427 * 180.30023 * 8 7 6 33 33 H 0.97001 * 119.99459 * 180.02562 * 13 12 10 34 34 H 1.08006 * 120.12519 * 180.02562 * 18 9 8 35 35 H 1.08007 * 119.87423 * 180.02562 * 19 18 9 36 36 H 1.08005 * 126.16274 * 179.97438 * 22 21 20 37 37 H 1.08005 * 126.44552 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5217 -3.5560 7 6 1.6873 -1.1519 -4.4014 8 6 2.1366 -1.8294 -5.5117 9 6 3.5160 -1.8859 -5.7844 10 6 3.9893 -2.5786 -6.9226 11 1 4.9983 -2.9632 -6.9398 12 6 3.1501 -2.7657 -8.0268 13 7 2.0797 -2.0269 -8.1676 14 14 3.5585 -4.0706 -9.2996 15 1 3.5957 -5.4040 -8.6473 16 1 2.5209 -4.0674 -10.3620 17 1 4.8837 -3.7769 -9.9019 18 6 4.4209 -1.2479 -4.9159 19 6 3.9490 -0.5762 -3.8114 20 6 2.0324 -0.7104 1.2305 21 7 2.5436 -0.1366 2.2821 22 6 2.8764 -1.0874 3.1731 23 6 2.5537 -2.2771 2.6395 24 8 2.0213 -2.0358 1.4253 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9173 -1.1205 -1.0286 29 1 2.7589 1.0462 -2.1181 30 1 1.0872 0.6163 -2.5526 31 1 0.6291 -1.1073 -4.1901 32 1 1.4333 -2.3155 -6.1717 33 1 1.4979 -2.1569 -8.9328 34 1 5.4816 -1.2846 -5.1158 35 1 4.6416 -0.0854 -3.1436 36 1 3.3227 -0.9238 4.1429 37 1 2.6913 -3.2448 3.0989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886539098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:41 Heat of formation + Delta-G solvation = 38.137749 kcal Electronic energy + Delta-G solvation = -19598.331475 eV Core-core repulsion = 16534.708529 eV Total energy + Delta-G solvation = -3063.622946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.38567 -37.94672 -36.51168 -34.77709 -33.82229 -31.73836 -29.69677 -29.27826 -28.81137 -26.30005 -24.08589 -22.87714 -22.40891 -20.96537 -20.59857 -19.89168 -17.61806 -17.29500 -16.63270 -15.94896 -15.44367 -15.18601 -14.61396 -14.23239 -14.01966 -13.54493 -13.45045 -13.18349 -12.64373 -12.32787 -12.12920 -11.99973 -11.90954 -11.51907 -11.37543 -11.27759 -11.04550 -10.97336 -10.70145 -10.48132 -10.39610 -9.62772 -9.37079 -9.13817 -9.01783 -8.26288 -7.44041 -7.31984 -6.76746 -4.35489 1.37374 2.55735 2.68502 2.74921 3.06055 3.08594 3.08756 3.18214 3.81528 3.92706 4.39702 4.68654 4.85881 4.91651 5.15531 5.18726 5.55310 5.67144 5.71173 5.75311 5.78314 5.83916 5.89395 6.13818 6.18407 6.24064 6.36299 6.44625 6.95999 7.06794 7.17407 7.29874 7.34476 7.49771 7.62004 7.68469 7.87451 8.05741 8.14183 8.30373 8.64696 8.89438 8.98043 10.17696 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033525 B = 0.003356 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.999997 B = 8341.870523 C = 8569.610901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.177 3.823 3 H 0.083 0.917 4 N -0.675 5.675 5 C 0.124 3.876 6 C -0.216 4.216 7 C -0.076 4.076 8 C -0.168 4.168 9 C 0.114 3.886 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.792 5.792 14 Si 0.908 3.092 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.266 1.266 18 C -0.228 4.228 19 C -0.084 4.084 20 C 0.198 3.802 21 N -0.488 5.488 22 C -0.049 4.049 23 C -0.078 4.078 24 O -0.185 6.185 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.345 0.655 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.281 0.719 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.182 0.818 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 0.860 14.710 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.067 3.933 3 H 0.100 0.900 4 N -0.308 5.308 5 C -0.003 4.003 6 C -0.218 4.218 7 C -0.095 4.095 8 C -0.188 4.188 9 C 0.111 3.889 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.417 5.417 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.248 4.248 19 C -0.103 4.103 20 C -0.009 4.009 21 N -0.218 5.218 22 C -0.188 4.188 23 C -0.150 4.150 24 O -0.070 6.070 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.164 0.836 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.200 0.800 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.830 1.299 14.396 14.729 hybrid contribution 1.009 -0.864 -0.215 1.346 sum -1.821 0.435 14.181 14.304 Atomic orbital electron populations 1.21833 0.92352 1.03370 1.02191 1.20077 0.96669 0.94527 0.82042 0.89987 1.60882 1.34308 1.33292 1.02341 1.20669 0.99564 0.91865 0.88198 1.18820 0.93244 1.10791 0.98937 1.20493 0.96791 0.97486 0.94753 1.21316 0.96301 1.03763 0.97385 1.17628 0.91688 0.88369 0.91178 1.19582 0.99613 1.31495 0.98604 0.90523 1.25910 0.94119 0.95157 0.98957 1.69819 1.11928 1.32106 1.27824 0.86378 0.79133 0.81759 0.79517 1.18800 1.20328 1.19035 1.20926 0.97896 1.06368 0.99589 1.20364 0.93855 0.99185 0.96860 1.26526 0.98713 0.77947 0.97720 1.70464 1.15595 1.34152 1.01567 1.23347 1.05525 0.88468 1.01448 1.25109 1.03004 1.01892 0.84961 1.84543 1.61755 1.27697 1.33001 0.92303 0.90766 0.91321 0.83610 0.95780 0.91316 0.89368 0.86491 0.90802 0.89164 0.89924 0.80049 0.76937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.40 37.16 0.35 -1.29 16 2 C 0.18 2.37 3.16 -68.86 -0.22 2.15 16 3 H 0.08 1.06 7.80 -51.93 -0.40 0.65 16 4 N -0.67 -10.57 6.29 -109.21 -0.69 -11.26 16 5 C 0.12 2.09 5.60 -4.98 -0.03 2.07 16 6 C -0.22 -4.58 5.42 -104.33 -0.56 -5.14 16 7 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 8 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 9 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 10 C -0.46 -12.32 9.05 -37.74 -0.34 -12.66 16 11 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 12 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 13 N -0.79 -20.40 10.95 55.55 0.61 -19.79 16 14 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 19 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 20 C 0.20 2.78 6.83 -12.95 -0.09 2.69 16 21 N -0.49 -6.85 11.29 -11.10 -0.13 -6.98 16 22 C -0.05 -0.54 11.89 -17.77 -0.21 -0.75 16 23 C -0.08 -0.81 12.17 29.35 0.36 -0.45 16 24 O -0.19 -2.54 10.78 5.36 0.06 -2.49 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.34 5.65 8.34 -39.29 -0.33 5.32 16 29 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 30 H 0.07 1.10 7.37 -51.93 -0.38 0.71 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 33 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 34 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 35 H 0.08 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.21 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -28.91 320.19 -8.02 -36.92 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.75 Total: 9.33 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -2.92 Total: -24.15 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.20 Total: -38.03 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.06 Total: -2.49 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.91 -8.02 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886539098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.061 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds