Wall clock time and date at job start Mon Mar 30 2020 01:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 N 1.46900 * 109.47203 * 240.00029 * 2 1 3 5 5 C 1.46902 * 110.99875 * 85.00060 * 4 2 1 6 6 C 1.50699 * 109.47002 * 180.02562 * 5 4 2 7 7 C 1.38636 * 119.75289 * 89.99736 * 6 5 4 8 8 C 1.37615 * 120.25185 * 179.70401 * 7 6 5 9 9 C 1.40720 * 119.74367 * 0.27407 * 8 7 6 10 10 C 1.41400 * 120.24537 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99966 * 204.38968 * 10 9 8 12 12 C 1.39950 * 119.99539 * 24.39535 * 10 9 8 13 13 N 1.30819 * 120.00082 * 17.85436 * 12 10 9 14 14 Si 1.86800 * 119.99528 * 197.85557 * 12 10 9 15 15 H 1.48492 * 109.47384 * 59.99611 * 14 12 10 16 16 H 1.48500 * 109.46729 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46863 * 299.99545 * 14 12 10 18 18 C 1.40718 * 119.51008 * 0.02562 * 9 8 7 19 19 C 1.37614 * 119.74514 * 359.97438 * 18 9 8 20 20 C 1.50705 * 109.46973 * 119.99986 * 2 1 3 21 21 N 1.30252 * 125.61742 * 254.99954 * 20 2 1 22 22 C 1.34479 * 108.69662 * 179.97438 * 21 20 2 23 23 C 1.34323 * 107.67138 * 359.97438 * 22 21 20 24 24 O 1.33969 * 125.61671 * 74.69055 * 20 2 1 25 25 H 1.08992 * 109.47188 * 299.99930 * 1 2 3 26 26 H 1.09000 * 109.46668 * 60.00073 * 1 2 3 27 27 H 1.08994 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.00898 * 110.99646 * 208.95791 * 4 2 1 29 29 H 1.08995 * 109.47008 * 59.99923 * 5 4 2 30 30 H 1.09000 * 109.47344 * 299.99458 * 5 4 2 31 31 H 1.08001 * 119.87542 * 359.97438 * 7 6 5 32 32 H 1.08000 * 120.13427 * 180.30023 * 8 7 6 33 33 H 0.97001 * 119.99459 * 180.02562 * 13 12 10 34 34 H 1.08006 * 120.12519 * 180.02562 * 18 9 8 35 35 H 1.08007 * 119.87423 * 180.02562 * 19 18 9 36 36 H 1.08005 * 126.16274 * 179.97438 * 22 21 20 37 37 H 1.08005 * 126.44552 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5217 -3.5560 7 6 1.6873 -1.1519 -4.4014 8 6 2.1366 -1.8294 -5.5117 9 6 3.5160 -1.8859 -5.7844 10 6 3.9893 -2.5786 -6.9226 11 1 4.9983 -2.9632 -6.9398 12 6 3.1501 -2.7657 -8.0268 13 7 2.0797 -2.0269 -8.1676 14 14 3.5585 -4.0706 -9.2996 15 1 3.5957 -5.4040 -8.6473 16 1 2.5209 -4.0674 -10.3620 17 1 4.8837 -3.7769 -9.9019 18 6 4.4209 -1.2479 -4.9159 19 6 3.9490 -0.5762 -3.8114 20 6 2.0324 -0.7104 1.2305 21 7 2.5436 -0.1366 2.2821 22 6 2.8764 -1.0874 3.1731 23 6 2.5537 -2.2771 2.6395 24 8 2.0213 -2.0358 1.4253 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9173 -1.1205 -1.0286 29 1 2.7589 1.0462 -2.1181 30 1 1.0872 0.6163 -2.5526 31 1 0.6291 -1.1073 -4.1901 32 1 1.4333 -2.3155 -6.1717 33 1 1.4979 -2.1569 -8.9328 34 1 5.4816 -1.2846 -5.1158 35 1 4.6416 -0.0854 -3.1436 36 1 3.3227 -0.9238 4.1429 37 1 2.6913 -3.2448 3.0989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886539098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:40 Heat of formation + Delta-G solvation = 18.706567 kcal Electronic energy + Delta-G solvation = -19599.174074 eV Core-core repulsion = 16534.708529 eV Total energy + Delta-G solvation = -3064.465545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.30333 -39.63852 -37.84440 -35.77066 -35.56346 -33.16257 -31.26343 -30.92874 -29.93364 -27.89512 -25.45647 -24.03832 -23.44748 -22.83010 -21.62873 -21.59010 -19.20212 -18.59212 -17.59284 -17.19686 -17.00951 -16.39572 -15.78801 -15.72999 -15.48857 -15.13090 -14.90650 -14.26404 -14.00549 -13.79158 -13.63191 -13.42670 -13.18325 -13.06491 -12.78507 -12.63784 -12.45519 -12.33308 -12.12504 -12.05461 -11.65482 -11.42384 -11.21524 -10.99352 -9.88578 -9.50357 -9.32186 -9.17278 -8.62625 -6.32086 0.47704 0.96683 1.17941 1.38133 1.49000 1.53454 1.67986 1.82399 2.21370 2.65696 2.91343 3.38172 3.80799 4.00679 4.10862 4.19831 4.26050 4.32738 4.38623 4.58756 4.64317 4.70192 4.75913 4.88455 4.93361 4.98861 5.08669 5.17376 5.26570 5.30880 5.41014 5.48695 5.73392 5.90199 6.03749 6.12768 6.21467 6.33834 6.41547 6.73343 6.74848 6.96138 7.06526 8.34216 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033525 B = 0.003356 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.999997 B = 8341.870523 C = 8569.610901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 H 0.090 0.910 4 N -0.681 5.681 5 C 0.131 3.869 6 C -0.201 4.201 7 C -0.082 4.082 8 C -0.193 4.193 9 C 0.081 3.919 10 C -0.505 4.505 11 H 0.073 0.927 12 C 0.036 3.964 13 N -0.824 5.824 14 Si 0.981 3.019 15 H -0.262 1.262 16 H -0.266 1.266 17 H -0.260 1.260 18 C -0.246 4.246 19 C -0.085 4.085 20 C 0.177 3.823 21 N -0.508 5.508 22 C -0.065 4.065 23 C -0.069 4.069 24 O -0.206 6.206 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.340 0.660 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.288 0.712 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.212 0.788 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 0.902 16.374 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.071 3.929 3 H 0.107 0.893 4 N -0.313 5.313 5 C 0.004 3.996 6 C -0.203 4.203 7 C -0.101 4.101 8 C -0.212 4.212 9 C 0.078 3.922 10 C -0.535 4.535 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.450 5.450 14 Si 0.802 3.198 15 H -0.186 1.186 16 H -0.191 1.191 17 H -0.184 1.184 18 C -0.265 4.265 19 C -0.104 4.104 20 C -0.029 4.029 21 N -0.239 5.239 22 C -0.202 4.202 23 C -0.139 4.139 24 O -0.091 6.091 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.229 0.771 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.887 1.352 16.078 16.391 hybrid contribution 1.025 -0.809 -0.495 1.397 sum -1.862 0.543 15.583 15.703 Atomic orbital electron populations 1.21805 0.91282 1.03001 1.03155 1.20077 0.97364 0.94475 0.80967 0.89292 1.60761 1.34070 1.33417 1.03100 1.20582 1.00488 0.91698 0.86859 1.19267 0.92706 1.08735 0.99559 1.20750 0.98176 0.96981 0.94147 1.21285 0.95961 1.05396 0.98571 1.17966 0.92503 0.89532 0.92170 1.19827 1.00196 1.33544 0.99883 0.90890 1.26741 0.93735 0.96795 1.00644 1.69871 1.12911 1.33385 1.28864 0.85275 0.79236 0.78485 0.76842 1.18597 1.19068 1.18407 1.21137 0.97982 1.06958 1.00444 1.20695 0.94939 0.98389 0.96339 1.26522 1.00045 0.78234 0.98143 1.70436 1.15793 1.35395 1.02234 1.23911 1.05831 0.88192 1.02314 1.25975 1.00900 1.03496 0.83551 1.84537 1.62283 1.27694 1.34560 0.90940 0.90178 0.92319 0.84163 0.94201 0.89979 0.87608 0.88359 0.90139 0.88864 0.86942 0.77141 0.72943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.40 71.98 0.68 -2.22 16 2 C 0.18 4.50 3.16 44.17 0.14 4.64 16 3 H 0.09 2.08 7.80 -2.39 -0.02 2.07 16 4 N -0.68 -20.04 6.29 -499.45 -3.14 -23.19 16 5 C 0.13 4.10 5.60 85.56 0.48 4.58 16 6 C -0.20 -8.26 5.42 -19.67 -0.11 -8.36 16 7 C -0.08 -3.77 9.67 22.22 0.21 -3.55 16 8 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 9 C 0.08 4.44 5.58 -21.29 -0.12 4.32 16 10 C -0.51 -27.91 9.05 23.46 0.21 -27.69 16 11 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 12 C 0.04 1.84 5.14 85.26 0.44 2.27 16 13 N -0.82 -43.78 10.95 21.83 0.24 -43.54 16 14 Si 0.98 38.80 29.60 68.60 2.03 40.83 16 15 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 16 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 18 C -0.25 -12.23 9.80 22.73 0.22 -12.01 16 19 C -0.09 -3.66 9.67 22.22 0.21 -3.45 16 20 C 0.18 4.68 6.83 88.34 0.60 5.28 16 21 N -0.51 -13.33 11.29 -303.83 -3.43 -16.76 16 22 C -0.06 -1.26 11.89 83.39 0.99 -0.27 16 23 C -0.07 -1.24 12.17 66.92 0.81 -0.42 16 24 O -0.21 -5.30 10.78 -3.74 -0.04 -5.34 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.62 7.45 -2.39 -0.02 1.60 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.34 10.59 8.34 -89.70 -0.75 9.85 16 29 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 30 H 0.08 2.38 7.37 -2.39 -0.02 2.36 16 31 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 33 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 34 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 35 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 36 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.25 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -64.28 320.19 0.97 -63.31 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.33 Total: 31.66 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 4.98 Total: -46.97 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -6.33 Total: -83.49 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.04 Total: -5.34 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -64.28 0.97 -63.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886539098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.017 kcal (2) G-P(sol) polarization free energy of solvation -64.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds