Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35830 * 116.99999 * 2 1 4 4 C 1.39833 * 119.61875 * 0.02562 * 3 2 1 5 5 C 1.36045 * 120.78459 * 179.97438 * 4 3 2 6 6 C 1.40399 * 119.86344 * 359.97438 * 5 4 3 7 7 C 1.40961 * 121.11691 * 179.97438 * 6 5 4 8 8 C 1.36262 * 118.32481 * 180.02562 * 7 6 5 9 9 C 1.40189 * 119.89368 * 0.02562 * 8 7 6 10 10 N 1.38692 * 119.24039 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99503 * 4.99938 * 10 9 8 12 12 C 1.46498 * 120.00237 * 184.99671 * 10 9 8 13 13 C 1.50702 * 109.46663 * 90.00379 * 12 10 9 14 14 H 1.07995 * 120.00660 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99698 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99897 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00080 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47321 * 90.00282 * 17 15 13 19 19 H 1.48503 * 109.47561 * 210.00295 * 17 15 13 20 20 H 1.48499 * 109.47423 * 330.00216 * 17 15 13 21 21 N 1.31747 * 121.52593 * 0.02562 * 9 8 7 22 22 C 1.33853 * 121.24081 * 359.95181 * 21 9 8 23 23 C 1.37638 * 119.62507 * 179.97438 * 3 2 1 24 24 H 1.09009 * 109.46915 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46873 * 299.99267 * 1 2 3 26 26 H 1.08992 * 109.47495 * 59.99518 * 1 2 3 27 27 H 1.07995 * 119.60763 * 0.27285 * 4 3 2 28 28 H 1.08002 * 120.06675 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.83914 * 0.02562 * 7 6 5 30 30 H 1.07994 * 120.05127 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47194 * 90.00227 * 11 10 9 32 32 H 1.09000 * 109.46976 * 209.99772 * 11 10 9 33 33 H 1.08999 * 109.47157 * 330.00375 * 11 10 9 34 34 H 1.08998 * 109.46904 * 209.99830 * 12 10 9 35 35 H 1.09001 * 109.47348 * 330.00018 * 12 10 9 36 36 H 0.97003 * 119.99965 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.18081 * 0.03443 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2763 2.3779 0.0005 5 6 1.8692 3.6024 0.0011 6 6 3.2697 3.7010 0.0016 7 6 3.9115 4.9560 0.0017 8 6 5.2738 4.9854 0.0017 9 6 5.9986 3.7854 0.0011 10 7 7.3848 3.8312 0.0006 11 6 8.0751 5.1187 0.1112 12 6 8.1586 2.5922 -0.1105 13 6 8.4193 2.2915 -1.5640 14 1 8.0457 2.9565 -2.3285 15 6 9.1350 1.1674 -1.9178 16 7 9.5904 0.3578 -0.9867 17 14 9.4576 0.7942 -3.7194 18 1 10.7316 1.4329 -4.1368 19 1 9.5546 -0.6752 -3.9110 20 1 8.3431 1.3281 -4.5429 21 7 5.3935 2.6152 0.0001 22 6 4.0580 2.5242 0.0005 23 6 3.4206 1.2733 0.0005 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.1987 2.3068 0.0054 28 1 1.2637 4.4967 0.0011 29 1 3.3381 5.8711 0.0017 30 1 5.7943 5.9317 0.0021 31 1 8.2497 5.3482 1.1624 32 1 9.0297 5.0652 -0.4124 33 1 7.4597 5.9004 -0.3340 34 1 9.1078 2.7086 0.4124 35 1 7.5965 1.7715 0.3353 36 1 10.0936 -0.4333 -1.2356 37 1 4.0058 0.3655 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891401697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = 32.521708 kcal Electronic energy + Delta-G solvation = -20150.297425 eV Core-core repulsion = 17086.430950 eV Total energy + Delta-G solvation = -3063.866475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43254 -39.05201 -36.82600 -34.46477 -32.93451 -32.48344 -29.90170 -29.13813 -27.87737 -26.94109 -25.39759 -23.67041 -22.42300 -21.74817 -20.72399 -18.38047 -16.97639 -16.84588 -16.36424 -15.89401 -15.64808 -15.21836 -14.46378 -14.24619 -14.05201 -13.76871 -13.40373 -13.27308 -13.12329 -12.66139 -12.21309 -12.11140 -11.86526 -11.63008 -11.38502 -11.14092 -10.96003 -10.81455 -10.73568 -10.50986 -10.07848 -9.85821 -9.62708 -8.68957 -8.55640 -8.36188 -7.62778 -6.73539 -5.96678 -4.03386 0.92148 1.47298 2.51245 3.32668 3.34671 3.39295 3.40701 3.45105 3.86931 4.48002 4.72738 4.79857 4.98839 5.08685 5.11791 5.18384 5.26847 5.34228 5.36763 5.41296 5.46586 5.59503 5.77537 5.90844 5.97393 6.18853 6.23375 6.30531 6.43634 6.57807 6.70256 6.76042 6.98198 7.16770 7.54023 7.59478 7.86982 7.99861 8.27705 8.29858 8.93509 9.05158 9.60598 11.08551 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.005494 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.482395 B = 5095.670983 C = 6311.714694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.145 3.855 4 C -0.231 4.231 5 C -0.036 4.036 6 C -0.197 4.197 7 C -0.024 4.024 8 C -0.231 4.231 9 C 0.444 3.556 10 N -0.584 5.584 11 C 0.094 3.906 12 C 0.250 3.750 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.538 5.538 22 C 0.230 3.770 23 C -0.158 4.158 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.262 0.738 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 7.879 3.348 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.098 3.902 4 C -0.251 4.251 5 C -0.054 4.054 6 C -0.202 4.202 7 C -0.049 4.049 8 C -0.255 4.255 9 C 0.195 3.805 10 N -0.292 5.292 11 C -0.050 4.050 12 C 0.131 3.869 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.259 5.259 22 C 0.104 3.896 23 C -0.179 4.179 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.760 6.750 3.379 16.578 hybrid contribution -0.462 0.627 -1.098 1.346 sum -15.222 7.377 2.281 17.069 Atomic orbital electron populations 1.22999 0.78957 1.03526 1.01097 1.86078 1.20903 1.27254 1.88820 1.18773 0.91798 0.83748 0.95902 1.20756 0.99492 0.92404 1.12403 1.20602 0.93027 0.96872 0.94944 1.18584 0.94225 0.94331 1.13049 1.21054 0.93909 0.96396 0.93521 1.21389 0.94879 0.98399 1.10800 1.18567 0.86017 0.88495 0.87455 1.47143 1.01210 1.08955 1.71852 1.21651 0.98008 0.85016 1.00325 1.19368 0.90169 0.80371 0.97025 1.21429 1.33952 1.08517 0.92228 0.92697 1.24899 0.95729 0.95811 0.97506 1.69933 1.37047 1.13947 1.32420 0.86540 0.78373 0.77518 0.85237 1.20746 1.21086 1.20005 1.67814 1.08267 1.25159 1.24654 1.18152 0.88394 0.91415 0.91669 1.19970 0.90699 0.97614 1.09572 0.88588 0.92866 0.92844 0.85913 0.85971 0.85258 0.85144 0.93752 0.90541 0.92279 0.95381 0.92797 0.92788 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.80 101.05 0.99 1.27 16 2 O -0.32 -4.66 10.48 -19.21 -0.20 -4.86 16 3 C 0.14 2.33 6.67 -39.20 -0.26 2.06 16 4 C -0.23 -3.10 8.94 -39.77 -0.36 -3.46 16 5 C -0.04 -0.48 9.74 -39.56 -0.39 -0.87 16 6 C -0.20 -3.30 5.75 -106.75 -0.61 -3.91 16 7 C -0.02 -0.35 9.87 -39.26 -0.39 -0.74 16 8 C -0.23 -3.83 9.18 -39.56 -0.36 -4.20 16 9 C 0.44 9.40 7.37 -155.48 -1.15 8.26 16 10 N -0.58 -12.70 2.96 -183.04 -0.54 -13.24 16 11 C 0.09 1.54 10.26 59.85 0.61 2.16 16 12 C 0.25 6.58 5.21 -5.19 -0.03 6.55 16 13 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 14 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 17 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 N -0.54 -12.50 9.00 -10.23 -0.09 -12.59 16 22 C 0.23 4.67 6.60 -84.87 -0.56 4.11 16 23 C -0.16 -3.03 9.94 -38.99 -0.39 -3.42 16 24 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.05 0.43 7.63 -51.93 -0.40 0.03 16 26 H 0.05 0.44 7.64 -51.93 -0.40 0.04 16 27 H 0.12 1.25 6.23 -52.49 -0.33 0.92 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.13 1.76 5.95 -52.49 -0.31 1.45 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.06 0.81 5.92 -51.93 -0.31 0.50 16 34 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.05 1.58 7.27 -51.93 -0.38 1.20 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.14 2.79 8.06 -52.48 -0.42 2.37 16 LS Contribution 314.14 15.07 4.73 4.73 Total: -1.00 -33.44 314.14 -8.30 -41.74 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.61 Total: -1.22 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.30 Total: -5.70 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.10 Total: -51.87 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.20 Total: -4.86 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.44 -8.30 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891401697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.262 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds