Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35830 * 116.99999 * 2 1 4 4 C 1.39833 * 119.61875 * 0.02562 * 3 2 1 5 5 C 1.36045 * 120.78459 * 179.97438 * 4 3 2 6 6 C 1.40399 * 119.86344 * 359.97438 * 5 4 3 7 7 C 1.40961 * 121.11691 * 179.97438 * 6 5 4 8 8 C 1.36262 * 118.32481 * 180.02562 * 7 6 5 9 9 C 1.40189 * 119.89368 * 0.02562 * 8 7 6 10 10 N 1.38692 * 119.24039 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99503 * 4.99938 * 10 9 8 12 12 C 1.46498 * 120.00237 * 184.99671 * 10 9 8 13 13 C 1.50702 * 109.46663 * 90.00379 * 12 10 9 14 14 H 1.07995 * 120.00660 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99698 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99897 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00080 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47321 * 90.00282 * 17 15 13 19 19 H 1.48503 * 109.47561 * 210.00295 * 17 15 13 20 20 H 1.48499 * 109.47423 * 330.00216 * 17 15 13 21 21 N 1.31747 * 121.52593 * 0.02562 * 9 8 7 22 22 C 1.33853 * 121.24081 * 359.95181 * 21 9 8 23 23 C 1.37638 * 119.62507 * 179.97438 * 3 2 1 24 24 H 1.09009 * 109.46915 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46873 * 299.99267 * 1 2 3 26 26 H 1.08992 * 109.47495 * 59.99518 * 1 2 3 27 27 H 1.07995 * 119.60763 * 0.27285 * 4 3 2 28 28 H 1.08002 * 120.06675 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.83914 * 0.02562 * 7 6 5 30 30 H 1.07994 * 120.05127 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47194 * 90.00227 * 11 10 9 32 32 H 1.09000 * 109.46976 * 209.99772 * 11 10 9 33 33 H 1.08999 * 109.47157 * 330.00375 * 11 10 9 34 34 H 1.08998 * 109.46904 * 209.99830 * 12 10 9 35 35 H 1.09001 * 109.47348 * 330.00018 * 12 10 9 36 36 H 0.97003 * 119.99965 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.18081 * 0.03443 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2763 2.3779 0.0005 5 6 1.8692 3.6024 0.0011 6 6 3.2697 3.7010 0.0016 7 6 3.9115 4.9560 0.0017 8 6 5.2738 4.9854 0.0017 9 6 5.9986 3.7854 0.0011 10 7 7.3848 3.8312 0.0006 11 6 8.0751 5.1187 0.1112 12 6 8.1586 2.5922 -0.1105 13 6 8.4193 2.2915 -1.5640 14 1 8.0457 2.9565 -2.3285 15 6 9.1350 1.1674 -1.9178 16 7 9.5904 0.3578 -0.9867 17 14 9.4576 0.7942 -3.7194 18 1 10.7316 1.4329 -4.1368 19 1 9.5546 -0.6752 -3.9110 20 1 8.3431 1.3281 -4.5429 21 7 5.3935 2.6152 0.0001 22 6 4.0580 2.5242 0.0005 23 6 3.4206 1.2733 0.0005 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.1987 2.3068 0.0054 28 1 1.2637 4.4967 0.0011 29 1 3.3381 5.8711 0.0017 30 1 5.7943 5.9317 0.0021 31 1 8.2497 5.3482 1.1624 32 1 9.0297 5.0652 -0.4124 33 1 7.4597 5.9004 -0.3340 34 1 9.1078 2.7086 0.4124 35 1 7.5965 1.7715 0.3353 36 1 10.0936 -0.4333 -1.2356 37 1 4.0058 0.3655 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891401697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = 10.941728 kcal Electronic energy + Delta-G solvation = -20151.233204 eV Core-core repulsion = 17086.430950 eV Total energy + Delta-G solvation = -3064.802254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71152 -40.27581 -38.22873 -35.92935 -34.62770 -34.15595 -31.12779 -30.59412 -29.53361 -27.95912 -26.91609 -25.36512 -23.81642 -23.01778 -22.25931 -19.54835 -18.68591 -18.20379 -18.12125 -17.21341 -16.73098 -16.64698 -16.18346 -15.77366 -15.33272 -15.08016 -14.75304 -14.58652 -14.44784 -14.02064 -13.83474 -13.27200 -13.17271 -13.10331 -12.90708 -12.75827 -12.59589 -12.42489 -12.16863 -12.01394 -11.87998 -11.61739 -11.11209 -10.62696 -10.10988 -9.96182 -8.89235 -8.43455 -8.03112 -6.33824 -0.28652 0.17145 1.25949 1.33078 1.36473 1.46468 2.13155 2.22880 2.36306 2.50075 3.08987 3.36718 3.68614 3.87414 4.04554 4.08607 4.15602 4.19128 4.39081 4.43213 4.45828 4.57815 4.67259 4.73683 4.78496 4.90509 5.01897 5.06104 5.11519 5.21948 5.30427 5.32577 5.48026 5.62967 5.65851 5.87825 6.08319 6.28425 6.48894 6.61701 6.79969 7.34116 7.58969 8.86670 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.005494 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.482395 B = 5095.670983 C = 6311.714694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.343 6.343 3 C 0.161 3.839 4 C -0.226 4.226 5 C -0.016 4.016 6 C -0.209 4.209 7 C -0.001 4.001 8 C -0.241 4.241 9 C 0.418 3.582 10 N -0.604 5.604 11 C 0.093 3.907 12 C 0.271 3.729 13 C -0.533 4.533 14 H 0.046 0.954 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.964 3.036 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.277 1.277 21 N -0.604 5.604 22 C 0.196 3.804 23 C -0.213 4.213 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.168 0.832 28 H 0.178 0.822 29 H 0.189 0.811 30 H 0.165 0.835 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.011 0.989 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.290 10.919 2.477 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.113 3.887 4 C -0.245 4.245 5 C -0.034 4.034 6 C -0.214 4.214 7 C -0.026 4.026 8 C -0.264 4.264 9 C 0.171 3.829 10 N -0.314 5.314 11 C -0.049 4.049 12 C 0.149 3.851 13 C -0.571 4.571 14 H 0.065 0.935 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.202 1.202 21 N -0.326 5.326 22 C 0.072 3.928 23 C -0.235 4.235 24 H 0.134 0.866 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.185 0.815 28 H 0.196 0.804 29 H 0.206 0.794 30 H 0.182 0.818 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.422 9.809 2.517 21.022 hybrid contribution 0.388 -0.416 -0.762 0.951 sum -18.034 9.394 1.755 20.409 Atomic orbital electron populations 1.23428 0.75784 1.05653 1.02881 1.86063 1.24200 1.27120 1.88239 1.18907 0.90824 0.85501 0.93454 1.21217 1.01428 0.91068 1.10778 1.21183 0.91645 0.98892 0.91662 1.18957 0.95845 0.93782 1.12806 1.21673 0.93366 0.97503 0.90009 1.21617 0.95791 0.97561 1.11437 1.19080 0.85786 0.89930 0.88124 1.47027 1.01815 1.08796 1.73785 1.21848 0.97745 0.83535 1.01778 1.18685 0.89145 0.81903 0.95374 1.21668 1.33732 1.08630 0.93114 0.93529 1.25806 0.95473 0.95571 1.02191 1.70061 1.37781 1.14444 1.34657 0.85470 0.78701 0.77446 0.79493 1.18724 1.20621 1.20172 1.67646 1.10632 1.27612 1.26739 1.18459 0.87986 0.93255 0.93135 1.19896 0.92536 0.96477 1.14545 0.86636 0.90835 0.91031 0.81450 0.80434 0.79358 0.81767 0.91879 0.91626 0.88855 0.97058 0.97327 0.92563 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.80 113.37 1.11 1.37 16 2 O -0.34 -9.93 10.48 -91.65 -0.96 -10.89 16 3 C 0.16 5.13 6.67 22.51 0.15 5.28 16 4 C -0.23 -5.16 8.94 22.15 0.20 -4.96 16 5 C -0.02 -0.34 9.74 22.29 0.22 -0.13 16 6 C -0.21 -6.53 5.75 -21.24 -0.12 -6.66 16 7 C 0.00 -0.02 9.87 22.48 0.22 0.20 16 8 C -0.24 -7.51 9.18 22.28 0.20 -7.31 16 9 C 0.42 18.39 7.37 133.62 0.98 19.38 16 10 N -0.60 -27.62 2.96 -733.01 -2.17 -29.79 16 11 C 0.09 3.05 10.26 127.77 1.31 4.36 16 12 C 0.27 15.43 5.21 85.63 0.45 15.88 16 13 C -0.53 -32.12 9.39 25.60 0.24 -31.88 16 14 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 15 C 0.01 0.49 5.46 84.65 0.46 0.95 16 16 N -0.93 -58.54 13.29 21.45 0.28 -58.25 16 17 Si 0.96 47.03 29.54 68.60 2.03 49.06 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 N -0.60 -30.33 9.00 -186.28 -1.68 -32.01 16 22 C 0.20 8.37 6.60 40.20 0.27 8.64 16 23 C -0.21 -8.91 9.94 22.65 0.23 -8.69 16 24 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.07 0.87 7.63 -2.39 -0.02 0.85 16 26 H 0.07 0.88 7.64 -2.39 -0.02 0.86 16 27 H 0.17 2.33 6.23 -2.91 -0.02 2.31 16 28 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.17 3.81 5.95 -2.91 -0.02 3.80 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 33 H 0.09 2.35 5.92 -2.39 -0.01 2.34 16 34 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 35 H 0.01 0.56 7.27 -2.39 -0.02 0.54 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 37 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -83.10 314.14 4.49 -78.61 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.08 Total: 6.85 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.92 Total: -3.58 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -3.56 Total: -120.05 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.96 Total: -10.89 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -83.10 4.49 -78.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891401697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.548 kcal (2) G-P(sol) polarization free energy of solvation -83.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds