Wall clock time and date at job start Mon Mar 30 2020 01:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35844 * 116.99874 * 2 1 4 4 C 1.36691 * 120.30847 * 359.97438 * 3 2 1 5 5 C 1.39279 * 120.94676 * 179.97438 * 4 3 2 6 6 C 1.36183 * 121.17999 * 359.97438 * 5 4 3 7 7 C 1.40451 * 119.65841 * 0.02562 * 6 5 4 8 8 C 1.40355 * 121.90960 * 179.97438 * 7 6 5 9 9 N 1.31233 * 120.14662 * 180.02562 * 8 7 6 10 10 C 1.33073 * 122.68408 * 0.02562 * 9 8 7 11 11 N 1.39274 * 119.24552 * 179.97438 * 10 9 8 12 12 C 1.46497 * 119.99799 * 185.00065 * 11 10 9 13 13 C 1.46495 * 119.99994 * 5.00345 * 11 10 9 14 14 C 1.50705 * 109.47026 * 89.99453 * 13 11 10 15 15 H 1.07999 * 120.00078 * 0.02562 * 14 13 11 16 16 C 1.37876 * 119.99776 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00271 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00095 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46975 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47363 * 120.00068 * 18 16 14 21 21 H 1.48500 * 109.47116 * 240.00611 * 18 16 14 22 22 C 1.38023 * 121.50670 * 359.97438 * 10 9 8 23 23 C 1.40372 * 118.54396 * 359.97438 * 22 10 9 24 24 H 1.09003 * 109.47197 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47239 * 299.99792 * 1 2 3 26 26 H 1.09000 * 109.47124 * 60.00371 * 1 2 3 27 27 H 1.07993 * 119.52954 * 359.95726 * 4 3 2 28 28 H 1.07999 * 119.40829 * 179.97438 * 5 4 3 29 29 H 1.08005 * 120.16941 * 180.02562 * 6 5 4 30 30 H 1.07993 * 119.92368 * 359.74956 * 8 7 6 31 31 H 1.08998 * 109.46935 * 90.00469 * 12 11 10 32 32 H 1.09002 * 109.47175 * 210.00504 * 12 11 10 33 33 H 1.09000 * 109.46933 * 330.00042 * 12 11 10 34 34 H 1.08996 * 109.47084 * 209.99706 * 13 11 10 35 35 H 1.09004 * 109.47338 * 330.00166 * 13 11 10 36 36 H 0.96998 * 120.00347 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.72773 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.3074 2.3608 -0.0005 5 6 1.9258 3.6087 0.0000 6 6 3.2828 3.7231 0.0016 7 6 4.0779 2.5653 0.0022 8 6 5.4800 2.6282 0.0032 9 7 6.1893 1.5241 0.0032 10 6 5.6353 0.3141 0.0017 11 7 6.4570 -0.8104 0.0013 12 6 5.8686 -2.1473 -0.1109 13 6 7.9095 -0.6563 0.1131 14 6 8.3065 -0.6777 1.5668 15 1 7.5523 -0.7949 2.3309 16 6 9.6327 -0.5489 1.9212 17 7 10.5512 -0.4067 0.9908 18 14 10.1249 -0.5761 3.7230 19 1 8.9133 -0.7469 4.5646 20 1 11.0579 -1.7060 3.9643 21 1 10.7947 0.7023 4.0725 22 6 4.2651 0.1482 0.0006 23 6 3.4510 1.2917 0.0016 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2291 2.3012 -0.0016 28 1 1.3183 4.5016 -0.0009 29 1 3.7452 4.6992 0.0024 30 1 5.9763 3.5874 -0.0004 31 1 5.7959 -2.4252 -1.1624 32 1 6.4988 -2.8667 0.4122 33 1 4.8736 -2.1449 0.3340 34 1 8.4031 -1.4750 -0.4104 35 1 8.2096 0.2927 -0.3314 36 1 11.4841 -0.3157 1.2401 37 1 3.8289 -0.8399 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891401901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:40 Heat of formation + Delta-G solvation = 12.842157 kcal Electronic energy + Delta-G solvation = -20269.580666 eV Core-core repulsion = 17204.860821 eV Total energy + Delta-G solvation = -3064.719845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.85384 -40.06382 -38.23764 -36.53786 -34.75936 -33.28598 -31.63247 -30.30693 -29.24303 -28.19119 -26.98080 -24.94436 -24.54232 -22.66960 -22.48941 -19.11990 -18.79780 -18.51063 -17.81228 -17.08357 -16.66052 -16.65769 -16.46168 -15.80760 -15.52365 -15.21311 -14.94116 -14.54928 -14.36915 -13.96458 -13.64911 -13.33382 -13.20745 -13.10002 -13.01000 -12.69563 -12.53051 -12.43919 -12.14352 -12.03843 -11.85154 -11.66442 -10.81557 -10.62274 -10.29004 -10.18171 -9.17500 -8.28633 -7.77481 -6.32775 -0.33986 0.17738 1.14400 1.35802 1.36987 1.49419 2.24886 2.34128 2.35871 2.44366 3.09739 3.28473 3.61149 3.87658 4.02888 4.06312 4.12355 4.30269 4.39197 4.43793 4.46718 4.55714 4.61620 4.72610 4.75453 4.76085 4.91377 5.03332 5.11093 5.13995 5.30605 5.44859 5.59484 5.63197 5.74550 5.90876 6.09867 6.27519 6.50922 6.60665 6.81748 7.33307 7.42698 8.87848 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024050 B = 0.004736 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.965281 B = 5910.446452 C = 6398.848816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.097 3.903 4 C -0.186 4.186 5 C -0.112 4.112 6 C -0.102 4.102 7 C -0.152 4.152 8 C 0.178 3.822 9 N -0.549 5.549 10 C 0.375 3.625 11 N -0.614 5.614 12 C 0.100 3.900 13 C 0.272 3.728 14 C -0.535 4.535 15 H 0.042 0.958 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.964 3.036 19 H -0.274 1.274 20 H -0.271 1.271 21 H -0.276 1.276 22 C -0.259 4.259 23 C -0.011 4.011 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.191 0.809 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.008 0.992 35 H 0.018 0.982 36 H 0.267 0.733 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.714 6.013 -2.553 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.052 3.948 4 C -0.206 4.206 5 C -0.130 4.130 6 C -0.122 4.122 7 C -0.156 4.156 8 C 0.005 3.995 9 N -0.261 5.261 10 C 0.150 3.850 11 N -0.323 5.323 12 C -0.043 4.043 13 C 0.151 3.849 14 C -0.574 4.574 15 H 0.060 0.940 16 C -0.187 4.187 17 N -0.567 5.567 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.197 1.197 21 H -0.202 1.202 22 C -0.286 4.286 23 C -0.017 4.017 24 H 0.133 0.867 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.173 0.827 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.208 0.792 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.026 0.974 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.356 5.484 -2.591 21.241 hybrid contribution -0.179 -0.328 0.789 0.873 sum -20.536 5.156 -1.802 21.250 Atomic orbital electron populations 1.23354 0.76257 1.05478 1.02428 1.86012 1.23515 1.26796 1.88708 1.18563 0.90380 0.85793 1.00074 1.21251 1.01232 0.91701 1.06421 1.20874 0.94578 0.97567 1.00021 1.21120 0.94023 0.97179 0.99873 1.18905 0.94981 0.93661 1.08047 1.23486 0.89681 0.96269 0.90081 1.66915 1.42875 0.98646 1.17706 1.18393 0.88020 0.86545 0.92018 1.46976 1.06579 1.03403 1.75293 1.21685 0.98988 0.82376 1.01245 1.18715 0.75062 0.95820 0.95344 1.21696 0.92532 1.50013 0.93116 0.93962 1.25757 0.96221 0.94593 1.02092 1.70051 1.01509 1.50600 1.34513 0.85430 0.78046 0.78098 0.79559 1.19880 1.19658 1.20181 1.21098 0.91135 0.99751 1.16628 1.17531 0.91459 0.93213 0.99490 0.86667 0.91505 0.91297 0.82723 0.82351 0.82398 0.79242 0.92367 0.91481 0.90542 0.97367 0.96416 0.92449 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.85 9.83 -91.79 -0.90 -9.76 16 3 C 0.10 2.77 6.67 22.52 0.15 2.92 16 4 C -0.19 -3.91 8.99 22.16 0.20 -3.71 16 5 C -0.11 -2.12 9.94 22.04 0.22 -1.90 16 6 C -0.10 -2.29 9.80 22.33 0.22 -2.07 16 7 C -0.15 -4.81 5.74 -21.30 -0.12 -4.93 16 8 C 0.18 6.32 11.03 85.30 0.94 7.27 16 9 N -0.55 -25.28 8.97 -192.09 -1.72 -27.00 16 10 C 0.37 17.19 7.37 132.50 0.98 18.17 16 11 N -0.61 -29.43 2.98 -733.47 -2.19 -31.62 16 12 C 0.10 3.78 10.27 127.77 1.31 5.09 16 13 C 0.27 15.38 5.22 85.64 0.45 15.82 16 14 C -0.53 -31.92 9.39 25.60 0.24 -31.68 16 15 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 16 C 0.01 0.71 5.46 84.65 0.46 1.18 16 17 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 18 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 19 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 C -0.26 -10.24 8.83 22.74 0.20 -10.04 16 23 C -0.01 -0.39 5.75 -21.22 -0.12 -0.51 16 24 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 26 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 27 H 0.16 2.16 6.22 -2.91 -0.02 2.14 16 28 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.19 5.15 8.06 -2.91 -0.02 5.13 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 33 H 0.08 2.56 5.95 -2.39 -0.01 2.55 16 34 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 35 H 0.02 1.10 7.28 -2.38 -0.02 1.08 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.14 5.09 5.64 -2.91 -0.02 5.07 16 Total: -1.00 -75.65 313.31 4.81 -70.84 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.08 Total: 8.90 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 6.23 Total: -3.02 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -3.62 Total: -114.97 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.90 Total: -9.76 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -75.65 4.81 -70.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891401901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.684 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds