Wall clock time and date at job start Mon Mar 30 2020 01:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35929 * 116.99908 * 2 1 4 4 C 1.39720 * 119.65688 * 0.02562 * 3 2 1 5 5 C 1.36044 * 120.98069 * 180.02562 * 4 3 2 6 6 C 1.40584 * 119.83505 * 359.97438 * 5 4 3 7 7 N 1.33844 * 120.92398 * 179.97438 * 6 5 4 8 8 C 1.31237 * 121.68323 * 180.02562 * 7 6 5 9 9 C 1.38878 * 121.85590 * 0.02562 * 8 7 6 10 10 C 1.38535 * 119.69191 * 0.02562 * 9 8 7 11 11 N 1.38728 * 121.04991 * 180.02562 * 10 9 8 12 12 C 1.46900 * 110.99559 * 296.04320 * 11 10 9 13 13 C 1.46897 * 111.00179 * 59.99562 * 11 10 9 14 14 C 1.50695 * 109.46963 * 170.00377 * 13 11 10 15 15 H 1.07994 * 120.00570 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99932 * 179.97438 * 14 13 11 17 17 N 1.31511 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00075 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47097 * 90.00422 * 18 16 14 20 20 H 1.48498 * 109.47281 * 210.00504 * 18 16 14 21 21 H 1.48502 * 109.47069 * 330.00252 * 18 16 14 22 22 C 1.41509 * 119.13643 * 359.97438 * 6 5 4 23 23 C 1.36695 * 119.64978 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47114 * 300.00005 * 1 2 3 25 25 H 1.09004 * 109.47043 * 60.00382 * 1 2 3 26 26 H 1.09005 * 109.46895 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.50551 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.07935 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.07133 * 179.97438 * 8 7 6 30 30 H 1.08000 * 120.14959 * 179.97438 * 9 8 7 31 31 H 1.08995 * 109.47575 * 59.99815 * 12 11 10 32 32 H 1.09002 * 109.47185 * 180.02562 * 12 11 10 33 33 H 1.09009 * 109.47176 * 299.99428 * 12 11 10 34 34 H 1.09005 * 109.47159 * 289.99820 * 13 11 10 35 35 H 1.08991 * 109.47377 * 50.00108 * 13 11 10 36 36 H 0.96999 * 120.00367 * 179.97438 * 17 16 14 37 37 H 1.07991 * 120.20394 * 359.72857 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2781 2.3783 0.0005 5 6 1.8675 3.6045 0.0000 6 6 3.2697 3.7064 -0.0005 7 7 3.8724 4.9015 -0.0015 8 6 5.1799 5.0140 -0.0025 9 6 6.0113 3.9016 -0.0031 10 6 5.4582 2.6315 -0.0032 11 7 6.2621 1.5009 -0.0033 12 6 7.0579 1.4210 -1.2355 13 6 7.1261 1.4692 1.1843 14 6 7.8002 0.1248 1.2794 15 1 7.6065 -0.6305 0.5321 16 6 8.6650 -0.1408 2.3199 17 7 8.9013 0.7790 3.2296 18 14 9.5000 -1.8076 2.4382 19 1 10.7902 -1.7682 1.7039 20 1 9.7520 -2.1350 3.8645 21 1 8.6215 -2.8448 1.8400 22 6 4.0465 2.5236 0.0000 23 6 3.4116 1.2744 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2005 2.3060 0.0014 28 1 1.2598 4.4972 0.0000 29 1 5.6218 5.9995 -0.0038 30 1 7.0841 4.0262 -0.0044 31 1 7.6942 2.3024 -1.3150 32 1 7.6786 0.5254 -1.2097 33 1 6.3909 1.3756 -2.0965 34 1 7.8826 2.2500 1.1043 35 1 6.5234 1.6374 2.0767 36 1 9.5095 0.5921 3.9618 37 1 3.9974 0.3672 0.0054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891402892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:57 Heat of formation + Delta-G solvation = 9.598006 kcal Electronic energy + Delta-G solvation = -20392.161978 eV Core-core repulsion = 17327.301456 eV Total energy + Delta-G solvation = -3064.860522 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.04859 -40.33133 -38.57596 -36.82405 -34.91387 -33.12149 -31.22488 -30.70828 -29.29028 -27.92163 -27.06595 -25.12704 -24.26647 -23.63595 -21.73771 -19.61131 -18.92078 -18.42259 -18.00418 -16.90527 -16.82568 -16.63459 -16.36815 -15.68269 -15.41969 -15.11309 -14.92195 -14.83884 -14.45601 -14.16714 -14.02141 -13.44060 -13.31167 -12.99772 -12.89460 -12.80328 -12.69720 -12.43866 -12.14781 -11.99549 -11.62608 -11.45837 -11.06830 -10.69313 -10.56932 -9.63090 -9.34512 -8.79069 -8.24596 -6.35742 -0.63577 -0.14748 0.94623 1.40574 1.42225 1.53848 1.92512 2.37450 2.37810 2.96477 3.08689 3.09224 3.36029 3.72808 3.84540 3.93658 4.03910 4.17762 4.30797 4.39715 4.46512 4.50367 4.56372 4.61497 4.75367 4.82826 4.93887 4.97982 5.05447 5.09781 5.12992 5.25060 5.29691 5.47548 5.64308 5.72875 5.99310 6.05664 6.42765 6.62157 6.77713 6.90592 7.33919 8.86567 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.005589 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.258988 B = 5008.858942 C = 6141.139712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.337 6.337 3 C 0.118 3.882 4 C -0.157 4.157 5 C -0.061 4.061 6 C 0.085 3.915 7 N -0.488 5.488 8 C 0.134 3.866 9 C -0.215 4.215 10 C 0.144 3.856 11 N -0.519 5.519 12 C 0.047 3.953 13 C 0.222 3.778 14 C -0.527 4.527 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.972 3.028 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.266 1.266 22 C -0.072 4.072 23 C -0.142 4.142 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.176 0.824 28 H 0.167 0.833 29 H 0.191 0.809 30 H 0.134 0.866 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.070 0.930 34 H -0.020 1.020 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 4.117 -8.413 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.251 6.251 3 C 0.072 3.928 4 C -0.177 4.177 5 C -0.079 4.079 6 C -0.037 4.037 7 N -0.196 5.196 8 C -0.038 4.038 9 C -0.237 4.237 10 C 0.041 3.959 11 N -0.240 5.240 12 C -0.099 4.099 13 C 0.098 3.902 14 C -0.565 4.565 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.573 5.573 18 Si 0.796 3.204 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.190 1.190 22 C -0.075 4.075 23 C -0.162 4.162 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.193 0.807 28 H 0.184 0.816 29 H 0.208 0.792 30 H 0.151 0.849 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.089 0.911 34 H -0.002 1.002 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.342 4.211 -8.245 18.782 hybrid contribution 1.887 -0.769 0.507 2.100 sum -14.455 3.442 -7.737 16.753 Atomic orbital electron populations 1.23438 0.76019 1.05787 1.02768 1.86128 1.23954 1.26426 1.88629 1.18769 0.91567 0.85476 0.96961 1.21388 1.02050 0.90551 1.03683 1.20885 0.90940 0.99039 0.97074 1.19176 0.95357 0.87577 1.01574 1.68041 1.12271 1.25346 1.13978 1.23110 0.88347 0.99454 0.92922 1.22851 1.02311 0.94007 1.04538 1.19511 0.92568 0.90229 0.93575 1.59318 1.24570 1.35251 1.04854 1.22278 0.96309 1.01587 0.89775 1.19396 0.88786 0.96354 0.85708 1.21399 1.25241 0.99375 1.10464 0.91459 1.25905 0.97252 1.01269 0.94900 1.70084 1.37119 1.35924 1.14136 0.85346 0.78777 0.78934 0.77359 1.19402 1.20832 1.18999 1.18632 0.92542 0.94485 1.01813 1.20082 0.92603 0.97462 1.06044 0.91223 0.90793 0.86543 0.80657 0.81582 0.79172 0.84852 0.95386 0.90707 0.91091 1.00225 0.98918 0.92534 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.80 113.37 1.11 1.31 16 2 O -0.34 -9.18 10.48 -92.75 -0.97 -10.15 16 3 C 0.12 3.52 6.64 22.27 0.15 3.67 16 4 C -0.16 -3.59 8.94 22.12 0.20 -3.39 16 5 C -0.06 -1.56 9.97 22.33 0.22 -1.34 16 6 C 0.08 2.86 6.60 40.22 0.27 3.13 16 7 N -0.49 -15.97 10.33 -188.94 -1.95 -17.92 16 8 C 0.13 4.13 11.13 84.93 0.95 5.07 16 9 C -0.21 -7.82 8.74 22.49 0.20 -7.62 16 10 C 0.14 5.97 4.69 38.95 0.18 6.16 16 11 N -0.52 -23.58 3.93 -723.02 -2.84 -26.42 16 12 C 0.05 1.83 9.20 127.69 1.17 3.00 16 13 C 0.22 12.04 4.31 85.56 0.37 12.41 16 14 C -0.53 -29.88 8.46 25.60 0.22 -29.66 16 15 H 0.07 3.72 7.12 -2.91 -0.02 3.70 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 18 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C -0.07 -2.77 5.75 -21.19 -0.12 -2.89 16 23 C -0.14 -5.34 9.48 22.37 0.21 -5.13 16 24 H 0.07 0.82 7.64 -2.39 -0.02 0.81 16 25 H 0.07 0.80 7.64 -2.38 -0.02 0.78 16 26 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.18 2.40 6.22 -2.91 -0.02 2.38 16 28 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.19 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.13 4.75 7.25 -2.91 -0.02 4.73 16 31 H 0.03 1.03 7.40 -2.39 -0.02 1.02 16 32 H 0.07 3.04 6.76 -2.39 -0.02 3.02 16 33 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 34 H -0.02 -1.13 7.54 -2.38 -0.02 -1.15 16 35 H -0.01 -0.45 8.05 -2.39 -0.02 -0.47 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.12 5.15 7.60 -2.92 -0.02 5.12 16 Total: -1.00 -70.52 311.98 3.20 -67.32 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.07 Total: 11.36 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 5.58 Total: -14.51 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -4.51 Total: -100.23 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.97 Total: -10.15 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.52 3.20 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891402892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.919 kcal (2) G-P(sol) polarization free energy of solvation -70.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds