Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46911 * 270.00190 * 3 2 1 5 5 H 1.48500 * 109.46780 * 29.99729 * 3 2 1 6 6 H 1.48497 * 109.47233 * 149.99587 * 3 2 1 7 7 C 1.37875 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99621 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00159 * 179.97438 * 7 2 1 10 10 C 1.53121 * 109.52326 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.28002 * 177.56060 * 10 9 7 12 12 N 1.46851 * 109.52350 * 300.82481 * 11 10 9 13 13 C 1.38253 * 111.00209 * 185.83754 * 12 11 10 14 14 C 1.36175 * 119.83269 * 0.02562 * 13 12 11 15 15 C 1.40036 * 120.25755 * 179.97438 * 14 13 12 16 16 C 1.36283 * 119.83439 * 0.02562 * 15 14 13 17 17 C 1.40667 * 119.40000 * 0.02562 * 16 15 14 18 18 N 1.32360 * 133.46229 * 179.97438 * 17 16 15 19 19 N 1.28666 * 109.55084 * 180.02562 * 18 17 16 20 20 C 1.30708 * 110.35186 * 359.97438 * 19 18 17 21 21 N 1.36368 * 107.46163 * 0.23315 * 20 19 18 22 22 C 1.46850 * 111.19811 * 61.73670 * 12 11 10 23 23 C 1.53038 * 109.52444 * 298.26031 * 22 12 11 24 24 H 0.97006 * 119.99953 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.57255 * 59.84302 * 9 7 2 26 26 H 1.08996 * 109.50058 * 57.62290 * 10 9 7 27 27 H 1.08999 * 109.50220 * 297.50097 * 10 9 7 28 28 H 1.08998 * 109.46308 * 180.80604 * 11 10 9 29 29 H 1.09002 * 109.45909 * 60.83374 * 11 10 9 30 30 H 1.07997 * 119.87115 * 359.97106 * 14 13 12 31 31 H 1.07994 * 120.08110 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.30109 * 179.97438 * 16 15 14 33 33 H 1.08002 * 126.26605 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.45625 * 58.27905 * 22 12 11 35 35 H 1.08996 * 109.45595 * 178.24199 * 22 12 11 36 36 H 1.08994 * 109.50145 * 299.23827 * 23 22 12 37 37 H 1.08997 * 109.49783 * 179.11748 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0232 -2.6372 0.0014 11 6 5.5523 -2.6312 -0.0607 12 7 5.9913 -1.9384 -1.2788 13 6 7.3623 -2.0278 -1.4330 14 6 8.1055 -2.6984 -0.5097 15 6 9.4947 -2.7950 -0.6573 16 6 10.1046 -2.2148 -1.7291 17 6 9.3267 -1.5238 -2.6758 18 7 9.6161 -0.8727 -3.7912 19 7 8.5353 -0.4051 -4.3096 20 6 7.5035 -0.7219 -3.5724 21 7 7.9656 -1.4378 -2.5077 22 6 5.5518 -0.5372 -1.2804 23 6 4.0227 -0.4808 -1.2548 24 1 -0.4850 0.8401 -0.0004 25 1 3.8770 -0.6774 0.8875 26 1 3.6259 -3.1650 -0.8656 27 1 3.6980 -3.1377 0.9134 28 1 5.9193 -3.6575 -0.0743 29 1 5.9492 -2.1152 0.8136 30 1 7.6216 -3.1575 0.3397 31 1 10.0814 -3.3271 0.0768 32 1 11.1756 -2.2843 -1.8502 33 1 6.4740 -0.4606 -3.7683 34 1 5.9489 -0.0312 -0.4004 35 1 5.9185 -0.0427 -2.1799 36 1 3.6254 -0.9746 -2.1415 37 1 3.6973 0.5594 -1.2401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893118460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = 130.633307 kcal Electronic energy + Delta-G solvation = -21032.837116 eV Core-core repulsion = 18005.517829 eV Total energy + Delta-G solvation = -3027.319286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.61146 -40.08766 -37.51719 -34.77857 -33.61851 -31.95977 -30.89710 -30.53841 -28.79627 -26.29632 -24.35330 -23.75282 -22.69928 -22.23730 -21.58146 -19.33522 -18.22103 -17.44649 -16.92040 -16.55409 -16.50782 -16.01229 -14.93713 -14.80291 -14.61376 -14.27695 -13.52399 -13.19931 -12.91278 -12.59625 -12.52164 -12.44246 -11.98469 -11.91881 -11.73030 -11.36238 -11.12124 -10.93737 -10.64788 -10.35843 -10.21298 -10.04557 -9.79682 -9.40270 -9.23145 -9.13029 -8.69071 -7.70727 -6.21439 -4.21873 0.54711 1.02805 2.05605 2.65301 3.12193 3.18403 3.21604 3.26930 3.49526 4.10100 4.25484 4.39853 4.58013 4.65082 4.88013 4.89132 5.01150 5.13317 5.31807 5.32847 5.34554 5.42945 5.61458 5.63232 5.67938 5.82355 5.95512 6.00154 6.04547 6.17188 6.30713 6.42331 6.56346 6.63329 6.86852 6.90615 7.00263 7.30604 7.58608 8.36233 8.49098 8.82514 9.39971 10.91787 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.005399 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.772376 B = 5185.123021 C = 5795.394812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.012 3.988 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.483 5.483 13 C 0.320 3.680 14 C -0.225 4.225 15 C -0.046 4.046 16 C -0.131 4.131 17 C 0.220 3.780 18 N -0.306 5.306 19 N -0.254 5.254 20 C 0.121 3.879 21 N -0.398 5.398 22 C 0.044 3.956 23 C -0.120 4.120 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.159 0.841 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.226 0.774 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.186 -5.178 0.986 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.006 4.006 10 C -0.137 4.137 11 C -0.069 4.069 12 N -0.197 5.197 13 C 0.116 3.884 14 C -0.251 4.251 15 C -0.071 4.071 16 C -0.154 4.154 17 C -0.030 4.030 18 N -0.151 5.151 19 N -0.092 5.092 20 C -0.162 4.162 21 N -0.082 5.082 22 C -0.080 4.080 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.177 0.823 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.242 0.758 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.446 -4.536 -0.730 17.076 hybrid contribution -0.261 0.778 1.393 1.616 sum 16.185 -3.758 0.663 16.629 Atomic orbital electron populations 1.69882 1.06269 1.27081 1.50210 1.25021 0.94676 0.98943 0.94405 0.86932 0.79895 0.83934 0.78019 1.20402 1.22172 1.19280 1.20962 0.88388 0.94593 1.51350 0.90612 1.19223 0.97242 0.91592 0.92592 1.21594 0.89765 0.99882 1.02438 1.22573 0.99411 0.97866 0.87085 1.58315 1.05237 1.16719 1.39467 1.18775 0.88874 0.94632 0.86155 1.20942 0.94233 1.09530 1.00378 1.20971 0.93822 0.95866 0.96445 1.20068 1.00216 1.01483 0.93630 1.22394 0.80816 1.01969 0.97776 1.74965 1.18848 1.15159 1.06155 1.74139 0.94803 1.17267 1.22943 1.26611 1.02304 1.00819 0.86433 1.43892 1.09546 1.36942 1.17771 1.22629 1.00104 0.83896 1.01339 1.22158 0.89446 1.01213 1.02914 0.92486 0.95548 0.91249 0.90938 0.89886 0.92784 0.82320 0.83705 0.82965 0.75795 0.93253 0.90903 0.90606 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.96 55.43 0.77 -25.41 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 3 Si 0.88 20.48 24.37 -169.99 -4.14 16.34 16 4 H -0.28 -6.26 6.89 56.52 0.39 -5.87 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -5.87 6.53 56.52 0.37 -5.50 16 7 C -0.52 -13.26 9.14 -34.44 -0.31 -13.57 16 8 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.01 0.25 1.75 -91.65 -0.16 0.09 16 10 C -0.10 -1.63 5.32 -26.65 -0.14 -1.78 16 11 C 0.06 0.73 4.13 -3.83 -0.02 0.72 16 12 N -0.48 -6.82 4.64 -173.15 -0.80 -7.63 16 13 C 0.32 4.23 6.41 -153.06 -0.98 3.24 16 14 C -0.22 -2.35 8.76 -39.65 -0.35 -2.70 16 15 C -0.05 -0.41 10.05 -39.61 -0.40 -0.80 16 16 C -0.13 -1.41 10.10 -39.37 -0.40 -1.81 16 17 C 0.22 3.20 7.92 -156.00 -1.24 1.96 16 18 N -0.31 -5.16 12.30 31.13 0.38 -4.78 16 19 N -0.25 -4.28 12.18 29.89 0.36 -3.92 16 20 C 0.12 1.79 11.25 -88.98 -1.00 0.79 16 21 N -0.40 -5.76 2.91 -63.22 -0.18 -5.94 16 22 C 0.04 0.69 5.24 -3.83 -0.02 0.67 16 23 C -0.12 -2.26 4.84 -26.65 -0.13 -2.39 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.56 7.19 -51.92 -0.37 0.19 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.08 0.88 6.94 -51.93 -0.36 0.52 16 29 H 0.05 0.66 7.70 -51.93 -0.40 0.26 16 30 H 0.16 1.33 5.64 -52.49 -0.30 1.03 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.23 2.80 6.65 -52.49 -0.35 2.45 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.04 4.67 -51.93 -0.24 0.79 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.06 1.21 3.39 -51.93 -0.18 1.03 16 LS Contribution 288.39 15.07 4.35 4.35 Total: -1.00 -30.84 288.39 -8.83 -39.67 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.33 Total: 1.04 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -5.24 Total: -13.73 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.53 Total: -47.67 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.14 Total: 16.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.84 -8.83 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893118460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.307 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds