Wall clock time and date at job start Mon Mar 30 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46911 * 270.00190 * 3 2 1 5 5 H 1.48500 * 109.46780 * 29.99729 * 3 2 1 6 6 H 1.48497 * 109.47233 * 149.99587 * 3 2 1 7 7 C 1.37875 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99621 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00159 * 179.97438 * 7 2 1 10 10 C 1.53121 * 109.52326 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.28002 * 177.56060 * 10 9 7 12 12 N 1.46851 * 109.52350 * 300.82481 * 11 10 9 13 13 C 1.38253 * 111.00209 * 185.83754 * 12 11 10 14 14 C 1.36175 * 119.83269 * 0.02562 * 13 12 11 15 15 C 1.40036 * 120.25755 * 179.97438 * 14 13 12 16 16 C 1.36283 * 119.83439 * 0.02562 * 15 14 13 17 17 C 1.40667 * 119.40000 * 0.02562 * 16 15 14 18 18 N 1.32360 * 133.46229 * 179.97438 * 17 16 15 19 19 N 1.28666 * 109.55084 * 180.02562 * 18 17 16 20 20 C 1.30708 * 110.35186 * 359.97438 * 19 18 17 21 21 N 1.36368 * 107.46163 * 0.23315 * 20 19 18 22 22 C 1.46850 * 111.19811 * 61.73670 * 12 11 10 23 23 C 1.53038 * 109.52444 * 298.26031 * 22 12 11 24 24 H 0.97006 * 119.99953 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.57255 * 59.84302 * 9 7 2 26 26 H 1.08996 * 109.50058 * 57.62290 * 10 9 7 27 27 H 1.08999 * 109.50220 * 297.50097 * 10 9 7 28 28 H 1.08998 * 109.46308 * 180.80604 * 11 10 9 29 29 H 1.09002 * 109.45909 * 60.83374 * 11 10 9 30 30 H 1.07997 * 119.87115 * 359.97106 * 14 13 12 31 31 H 1.07994 * 120.08110 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.30109 * 179.97438 * 16 15 14 33 33 H 1.08002 * 126.26605 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.45625 * 58.27905 * 22 12 11 35 35 H 1.08996 * 109.45595 * 178.24199 * 22 12 11 36 36 H 1.08994 * 109.50145 * 299.23827 * 23 22 12 37 37 H 1.08997 * 109.49783 * 179.11748 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0232 -2.6372 0.0014 11 6 5.5523 -2.6312 -0.0607 12 7 5.9913 -1.9384 -1.2788 13 6 7.3623 -2.0278 -1.4330 14 6 8.1055 -2.6984 -0.5097 15 6 9.4947 -2.7950 -0.6573 16 6 10.1046 -2.2148 -1.7291 17 6 9.3267 -1.5238 -2.6758 18 7 9.6161 -0.8727 -3.7912 19 7 8.5353 -0.4051 -4.3096 20 6 7.5035 -0.7219 -3.5724 21 7 7.9656 -1.4378 -2.5077 22 6 5.5518 -0.5372 -1.2804 23 6 4.0227 -0.4808 -1.2548 24 1 -0.4850 0.8401 -0.0004 25 1 3.8770 -0.6774 0.8875 26 1 3.6259 -3.1650 -0.8656 27 1 3.6980 -3.1377 0.9134 28 1 5.9193 -3.6575 -0.0743 29 1 5.9492 -2.1152 0.8136 30 1 7.6216 -3.1575 0.3397 31 1 10.0814 -3.3271 0.0768 32 1 11.1756 -2.2843 -1.8502 33 1 6.4740 -0.4606 -3.7683 34 1 5.9489 -0.0312 -0.4004 35 1 5.9185 -0.0427 -2.1799 36 1 3.6254 -0.9746 -2.1415 37 1 3.6973 0.5594 -1.2401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893118460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:44 Heat of formation + Delta-G solvation = 112.176142 kcal Electronic energy + Delta-G solvation = -21033.637478 eV Core-core repulsion = 18005.517829 eV Total energy + Delta-G solvation = -3028.119649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.62955 -41.17690 -38.61598 -36.07639 -34.82265 -33.71116 -32.10922 -31.60229 -29.91942 -27.77887 -25.52022 -24.81689 -23.87611 -23.56040 -22.72269 -20.73563 -19.25118 -18.84597 -18.40760 -17.61128 -17.50097 -17.04888 -16.41899 -15.90812 -15.82894 -15.40972 -15.01420 -14.81102 -14.21638 -13.93470 -13.74080 -13.55049 -13.10373 -13.05943 -12.85963 -12.76338 -12.25066 -12.22081 -12.16429 -11.79527 -11.71616 -11.55282 -11.08046 -10.99739 -10.81543 -10.68349 -10.21329 -8.65720 -8.30953 -6.34445 -0.33097 0.10994 1.09674 1.27519 1.32354 1.41854 1.59177 2.25284 2.29353 2.51449 3.04457 3.18610 3.51886 3.59131 3.68152 3.83503 3.95091 4.08297 4.10745 4.21933 4.31642 4.37913 4.49887 4.58797 4.64049 4.73945 4.82107 4.87214 4.90919 5.06307 5.12569 5.22268 5.34334 5.45892 5.54564 5.64045 5.70849 5.91685 5.94239 6.30646 6.74205 7.31234 7.41706 8.86053 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.005399 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.772376 B = 5185.123021 C = 5795.394812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.302 1.302 6 H -0.242 1.242 7 C -0.514 4.514 8 H 0.035 0.965 9 C 0.009 3.991 10 C -0.095 4.095 11 C 0.063 3.937 12 N -0.493 5.493 13 C 0.289 3.711 14 C -0.202 4.202 15 C -0.024 4.024 16 C -0.140 4.140 17 C 0.211 3.789 18 N -0.348 5.348 19 N -0.285 5.285 20 C 0.112 3.888 21 N -0.401 5.401 22 C 0.054 3.946 23 C -0.115 4.115 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.176 0.824 33 H 0.238 0.762 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.621 -6.188 2.741 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.166 1.166 7 C -0.552 4.552 8 H 0.054 0.946 9 C -0.009 4.009 10 C -0.132 4.132 11 C -0.062 4.062 12 N -0.208 5.208 13 C 0.086 3.914 14 C -0.227 4.227 15 C -0.049 4.049 16 C -0.162 4.162 17 C -0.038 4.038 18 N -0.194 5.194 19 N -0.122 5.122 20 C -0.171 4.171 21 N -0.084 5.084 22 C -0.070 4.070 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.206 0.794 31 H 0.211 0.789 32 H 0.193 0.807 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.925 -5.569 1.022 20.714 hybrid contribution -1.334 0.915 0.937 1.870 sum 18.591 -4.654 1.959 19.265 Atomic orbital electron populations 1.70048 1.08294 1.27897 1.52916 1.25866 0.95298 1.02857 0.94464 0.85946 0.79388 0.79128 0.78584 1.19514 1.23042 1.16577 1.21366 0.91563 0.92831 1.49446 0.94618 1.19208 0.93564 0.94786 0.93383 1.21459 0.92944 0.96787 1.02061 1.22562 0.96205 1.00031 0.87406 1.58214 1.06442 1.15750 1.40428 1.18990 0.88574 0.96859 0.86936 1.21519 0.94970 1.06636 0.99624 1.21520 0.93346 0.94000 0.96046 1.20567 1.01332 1.01041 0.93291 1.22985 0.81335 1.01723 0.97760 1.74848 1.19309 1.17278 1.07951 1.74025 0.95509 1.18469 1.24183 1.26814 1.02450 1.01113 0.86730 1.43963 1.09624 1.36889 1.17927 1.22394 0.96990 0.85546 1.02096 1.21936 0.92424 0.99694 1.01262 0.92688 0.95343 0.92827 0.90448 0.86499 0.90912 0.79405 0.78860 0.80659 0.74601 0.92762 0.90019 0.91897 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.82 13.96 21.45 0.30 -57.52 16 2 C 0.01 0.67 5.45 84.65 0.46 1.13 16 3 Si 0.94 42.53 24.37 68.60 1.67 44.20 16 4 H -0.27 -11.67 6.89 99.48 0.69 -10.98 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.24 -9.80 6.53 99.48 0.65 -9.15 16 7 C -0.51 -27.16 9.14 25.60 0.23 -26.93 16 8 H 0.04 2.11 7.99 -2.91 -0.02 2.08 16 9 C 0.01 0.38 1.75 -11.46 -0.02 0.36 16 10 C -0.09 -2.96 5.32 30.65 0.16 -2.79 16 11 C 0.06 1.37 4.13 86.33 0.36 1.72 16 12 N -0.49 -12.34 4.64 -701.72 -3.26 -15.59 16 13 C 0.29 6.52 6.41 131.31 0.84 7.36 16 14 C -0.20 -3.01 8.76 22.23 0.19 -2.82 16 15 C -0.02 -0.28 10.05 22.25 0.22 -0.05 16 16 C -0.14 -2.41 10.10 22.41 0.23 -2.19 16 17 C 0.21 5.71 7.92 133.99 1.06 6.77 16 18 N -0.35 -11.63 12.30 -55.42 -0.68 -12.31 16 19 N -0.28 -9.67 12.18 -59.34 -0.72 -10.39 16 20 C 0.11 3.27 11.25 179.77 2.02 5.29 16 21 N -0.40 -10.73 2.91 -353.91 -1.03 -11.76 16 22 C 0.05 1.55 5.24 86.33 0.45 2.00 16 23 C -0.12 -4.23 4.84 30.65 0.15 -4.09 16 24 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 25 H 0.03 1.14 7.19 -2.38 -0.02 1.12 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.12 1.79 6.94 -2.39 -0.02 1.77 16 29 H 0.07 1.35 7.70 -2.39 -0.02 1.33 16 30 H 0.19 1.71 5.64 -2.91 -0.02 1.70 16 31 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.24 5.83 6.65 -2.91 -0.02 5.81 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.08 2.19 4.67 -2.39 -0.01 2.17 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.04 1.76 3.39 -2.39 -0.01 1.75 16 Total: -1.00 -72.02 288.39 3.66 -68.37 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.02 Total: 9.25 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 6.36 Total: -14.23 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -5.39 Total: -107.59 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.67 Total: 44.20 kcal Total: -72.02 3.66 -68.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893118460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.542 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds