Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35967 * 117.00232 * 2 1 4 4 C 1.39139 * 119.91385 * 359.97438 * 3 2 1 5 5 C 1.37773 * 120.61689 * 180.02562 * 4 3 2 6 6 C 1.39166 * 119.98973 * 0.02562 * 5 4 3 7 7 N 1.38175 * 120.70915 * 180.02562 * 6 5 4 8 8 H 0.96996 * 118.80171 * 0.04062 * 7 6 5 9 9 C 1.35993 * 122.40410 * 180.02562 * 7 6 5 10 10 C 1.34445 * 122.52362 * 359.94547 * 9 7 6 11 11 C 1.46853 * 119.36411 * 0.02562 * 10 9 7 12 12 N 1.31510 * 121.32352 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00514 * 353.87835 * 12 11 10 14 14 C 1.53001 * 109.47291 * 114.41486 * 13 12 11 15 15 C 1.50699 * 109.47057 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00113 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99966 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99584 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00212 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47073 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47507 * 119.99945 * 19 17 15 22 22 H 1.48501 * 109.46886 * 239.99769 * 19 17 15 23 23 C 1.40315 * 119.38100 * 0.02562 * 6 5 4 24 24 C 1.38294 * 119.91902 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47289 * 300.00436 * 1 2 3 27 27 H 1.09007 * 109.46808 * 60.00386 * 1 2 3 28 28 H 1.07996 * 119.69011 * 359.72482 * 4 3 2 29 29 H 1.07996 * 120.00273 * 179.97438 * 5 4 3 30 30 H 1.07998 * 118.73755 * 179.97438 * 9 7 6 31 31 H 1.08001 * 120.31129 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.47403 * 234.42092 * 13 12 11 33 33 H 1.09006 * 109.46777 * 354.41684 * 13 12 11 34 34 H 1.08992 * 109.47127 * 300.00587 * 14 13 12 35 35 H 1.09006 * 109.46621 * 60.00688 * 14 13 12 36 36 H 0.97003 * 119.99374 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.21673 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2868 2.3773 -0.0005 5 6 1.8972 3.6124 -0.0011 6 6 3.2860 3.7020 -0.0016 7 7 3.9137 4.9329 -0.0016 8 1 3.3687 5.7353 -0.0007 9 6 5.2676 5.0605 -0.0027 10 6 6.0936 3.9998 -0.0027 11 6 5.5263 2.6453 -0.0021 12 7 6.2983 1.5807 -0.0016 13 6 7.7496 1.7281 -0.1369 14 6 8.4313 1.2702 1.1541 15 6 9.9241 1.4224 1.0151 16 1 10.3446 1.8077 0.0979 17 6 10.7532 1.0699 2.0588 18 7 10.2410 0.6013 3.1759 19 14 12.6035 1.2593 1.8869 20 1 12.9226 1.8042 0.5428 21 1 13.1051 2.1892 2.9303 22 1 13.2540 -0.0656 2.0506 23 6 4.0516 2.5261 -0.0022 24 6 3.4274 1.2818 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2087 2.3133 -0.0055 29 1 1.2980 4.5109 -0.0019 30 1 5.6957 6.0521 -0.0030 31 1 7.1642 4.1426 -0.0031 32 1 8.1007 1.1183 -0.9693 33 1 7.9925 2.7739 -0.3248 34 1 8.0801 1.8800 1.9864 35 1 8.1883 0.2243 1.3419 36 1 10.8243 0.3536 3.9104 37 1 4.0177 0.3774 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893128829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = 23.103579 kcal Electronic energy + Delta-G solvation = -19631.652293 eV Core-core repulsion = 16567.377417 eV Total energy + Delta-G solvation = -3064.274876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.59683 -39.02173 -36.09261 -35.79213 -33.21421 -31.58054 -30.29008 -29.82911 -28.35864 -27.10506 -24.89325 -23.35448 -22.75203 -21.50042 -20.19956 -18.49038 -18.02564 -17.53321 -16.42958 -15.91115 -15.75844 -15.24818 -14.94312 -14.45486 -14.19929 -13.96546 -13.81803 -13.23713 -12.96164 -12.64810 -12.29963 -12.24798 -12.22738 -11.73309 -11.61263 -10.98488 -10.90570 -10.86412 -10.76733 -10.43500 -9.98871 -9.49701 -9.14966 -8.85954 -8.46283 -8.31435 -8.22077 -6.78062 -5.95107 -3.98577 0.99851 1.29641 2.08447 3.15662 3.25707 3.30916 3.33848 3.40815 3.45181 4.18535 4.45239 4.55755 4.60575 4.83992 4.94965 5.01417 5.02419 5.22108 5.27221 5.33384 5.40051 5.61389 5.67620 5.87150 5.99109 6.22591 6.31099 6.34793 6.42463 6.57942 6.70645 6.94023 7.05743 7.25419 7.42114 7.46674 7.74767 7.87431 8.05492 8.43093 8.63815 9.08884 9.64883 11.16038 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.003820 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.113173 B = 7328.556098 C = 8212.378324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.082 3.918 4 C -0.161 4.161 5 C -0.143 4.143 6 C 0.155 3.845 7 N -0.638 5.638 8 H 0.408 0.592 9 C 0.122 3.878 10 C -0.254 4.254 11 C 0.205 3.795 12 N -0.510 5.510 13 C 0.042 3.958 14 C 0.033 3.967 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.046 4.046 24 C -0.071 4.071 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.014 0.986 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.567 8.964 -7.264 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.037 3.963 4 C -0.181 4.181 5 C -0.165 4.165 6 C 0.053 3.947 7 N -0.251 5.251 8 H 0.242 0.758 9 C -0.004 4.004 10 C -0.282 4.282 11 C 0.021 3.979 12 N -0.220 5.220 13 C -0.087 4.087 14 C -0.005 4.005 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.050 4.050 24 C -0.092 4.092 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.202 7.610 -7.045 23.602 hybrid contribution 1.001 1.400 0.083 1.724 sum -20.201 9.011 -6.962 23.189 Atomic orbital electron populations 1.22996 0.79008 1.03698 1.00936 1.86116 1.20766 1.26659 1.89428 1.18807 0.92042 0.84160 1.01332 1.20968 0.99732 0.91613 1.05835 1.20239 0.91307 0.97849 1.07075 1.17649 0.91629 0.85100 1.00332 1.40939 1.05464 1.06294 1.72447 0.75808 1.21088 0.82155 0.99806 0.97313 1.22405 1.00450 0.92055 1.13326 1.21050 0.91016 0.89539 0.96322 1.72600 1.08036 1.29257 1.12091 1.22577 0.84840 0.99542 1.01730 1.19058 0.93979 0.97284 0.90165 1.21229 0.91499 1.43003 1.00233 0.92569 1.25023 0.98827 0.95251 0.95309 1.70006 1.34958 1.43776 1.04442 0.86515 0.85570 0.77749 0.78038 1.19714 1.21040 1.20962 1.18100 0.91427 0.90966 1.04511 1.20360 0.90951 0.98255 0.99611 0.88485 0.92914 0.92973 0.85305 0.85398 0.83264 0.83569 0.90924 0.94390 0.96770 0.95800 0.93048 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.05 10.49 -19.64 -0.21 -4.26 16 3 C 0.08 1.11 6.68 -39.23 -0.26 0.85 16 4 C -0.16 -1.72 9.01 -39.42 -0.36 -2.08 16 5 C -0.14 -1.46 9.88 -39.41 -0.39 -1.85 16 6 C 0.15 1.99 6.67 -83.88 -0.56 1.43 16 7 N -0.64 -6.57 5.31 -10.77 -0.06 -6.63 16 8 H 0.41 2.55 8.76 -40.82 -0.36 2.19 16 9 C 0.12 1.42 11.06 -17.05 -0.19 1.23 16 10 C -0.25 -4.14 9.35 -37.44 -0.35 -4.49 16 11 C 0.20 3.92 6.97 -80.55 -0.56 3.36 16 12 N -0.51 -11.35 9.97 -55.59 -0.55 -11.91 16 13 C 0.04 0.99 6.17 -4.04 -0.02 0.96 16 14 C 0.03 0.93 5.30 -27.88 -0.15 0.78 16 15 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.93 13.29 55.43 0.74 -27.19 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.05 -0.75 5.89 -104.78 -0.62 -1.37 16 24 C -0.07 -1.15 9.58 -39.20 -0.38 -1.53 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.05 0.33 7.65 -51.92 -0.40 -0.07 16 28 H 0.13 0.99 6.26 -52.49 -0.33 0.66 16 29 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.15 2.48 6.02 -52.49 -0.32 2.17 16 32 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.04 0.84 5.34 -51.93 -0.28 0.56 16 34 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.15 2.63 7.71 -52.49 -0.40 2.23 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -35.74 314.99 -8.16 -43.90 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.56 Total: -0.22 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.25 Total: -15.59 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.12 Total: -45.73 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.21 Total: -4.26 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.74 -8.16 -43.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893128829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.002 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds