Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35967 * 117.00232 * 2 1 4 4 C 1.39139 * 119.91385 * 359.97438 * 3 2 1 5 5 C 1.37773 * 120.61689 * 180.02562 * 4 3 2 6 6 C 1.39166 * 119.98973 * 0.02562 * 5 4 3 7 7 N 1.38175 * 120.70915 * 180.02562 * 6 5 4 8 8 H 0.96996 * 118.80171 * 0.04062 * 7 6 5 9 9 C 1.35993 * 122.40410 * 180.02562 * 7 6 5 10 10 C 1.34445 * 122.52362 * 359.94547 * 9 7 6 11 11 C 1.46853 * 119.36411 * 0.02562 * 10 9 7 12 12 N 1.31510 * 121.32352 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00514 * 353.87835 * 12 11 10 14 14 C 1.53001 * 109.47291 * 114.41486 * 13 12 11 15 15 C 1.50699 * 109.47057 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00113 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99966 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99584 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00212 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47073 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47507 * 119.99945 * 19 17 15 22 22 H 1.48501 * 109.46886 * 239.99769 * 19 17 15 23 23 C 1.40315 * 119.38100 * 0.02562 * 6 5 4 24 24 C 1.38294 * 119.91902 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47289 * 300.00436 * 1 2 3 27 27 H 1.09007 * 109.46808 * 60.00386 * 1 2 3 28 28 H 1.07996 * 119.69011 * 359.72482 * 4 3 2 29 29 H 1.07996 * 120.00273 * 179.97438 * 5 4 3 30 30 H 1.07998 * 118.73755 * 179.97438 * 9 7 6 31 31 H 1.08001 * 120.31129 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.47403 * 234.42092 * 13 12 11 33 33 H 1.09006 * 109.46777 * 354.41684 * 13 12 11 34 34 H 1.08992 * 109.47127 * 300.00587 * 14 13 12 35 35 H 1.09006 * 109.46621 * 60.00688 * 14 13 12 36 36 H 0.97003 * 119.99374 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.21673 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2868 2.3773 -0.0005 5 6 1.8972 3.6124 -0.0011 6 6 3.2860 3.7020 -0.0016 7 7 3.9137 4.9329 -0.0016 8 1 3.3687 5.7353 -0.0007 9 6 5.2676 5.0605 -0.0027 10 6 6.0936 3.9998 -0.0027 11 6 5.5263 2.6453 -0.0021 12 7 6.2983 1.5807 -0.0016 13 6 7.7496 1.7281 -0.1369 14 6 8.4313 1.2702 1.1541 15 6 9.9241 1.4224 1.0151 16 1 10.3446 1.8077 0.0979 17 6 10.7532 1.0699 2.0588 18 7 10.2410 0.6013 3.1759 19 14 12.6035 1.2593 1.8869 20 1 12.9226 1.8042 0.5428 21 1 13.1051 2.1892 2.9303 22 1 13.2540 -0.0656 2.0506 23 6 4.0516 2.5261 -0.0022 24 6 3.4274 1.2818 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2087 2.3133 -0.0055 29 1 1.2980 4.5109 -0.0019 30 1 5.6957 6.0521 -0.0030 31 1 7.1642 4.1426 -0.0031 32 1 8.1007 1.1183 -0.9693 33 1 7.9925 2.7739 -0.3248 34 1 8.0801 1.8800 1.9864 35 1 8.1883 0.2243 1.3419 36 1 10.8243 0.3536 3.9104 37 1 4.0177 0.3774 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893128829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = -3.661457 kcal Electronic energy + Delta-G solvation = -19632.812913 eV Core-core repulsion = 16567.377417 eV Total energy + Delta-G solvation = -3065.435495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63685 -40.00429 -37.50833 -36.89179 -35.28876 -33.15062 -31.33054 -31.24659 -29.81287 -27.87459 -26.80151 -24.55837 -23.94390 -23.04946 -21.74002 -19.52868 -19.07516 -18.61605 -18.52556 -17.11459 -16.59281 -16.55621 -16.45122 -16.22956 -15.29405 -15.06024 -14.94843 -14.59278 -14.24702 -14.16253 -13.95786 -13.54923 -13.28475 -13.05744 -12.90884 -12.79539 -12.64520 -12.28291 -11.99889 -11.76358 -11.72197 -11.44176 -11.34256 -10.64277 -9.92900 -9.87246 -9.48418 -8.25452 -7.95688 -6.39208 -0.11011 0.22777 0.96856 1.36855 1.39681 1.53544 2.10297 2.22829 2.37946 2.45591 3.01589 3.07339 3.30595 3.69429 3.92539 4.04052 4.12218 4.25339 4.38388 4.44708 4.47559 4.49154 4.67389 4.74117 4.79605 4.88202 4.99023 5.00487 5.19110 5.23502 5.32100 5.38903 5.49696 5.55426 5.72101 5.77173 6.14525 6.17568 6.52855 6.64686 6.76162 7.18354 7.31417 8.88676 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.003820 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.113173 B = 7328.556098 C = 8212.378324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.345 6.345 3 C 0.081 3.919 4 C -0.146 4.146 5 C -0.115 4.115 6 C 0.147 3.853 7 N -0.612 5.612 8 H 0.437 0.563 9 C 0.184 3.816 10 C -0.328 4.328 11 C 0.216 3.784 12 N -0.589 5.589 13 C 0.064 3.936 14 C 0.046 3.954 15 C -0.545 4.545 16 H 0.065 0.935 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.979 3.021 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.276 1.276 23 C -0.083 4.083 24 C -0.108 4.108 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.173 0.827 29 H 0.184 0.816 30 H 0.206 0.794 31 H 0.128 0.872 32 H 0.058 0.942 33 H 0.047 0.953 34 H -0.021 1.021 35 H -0.020 1.020 36 H 0.265 0.735 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.525 12.966 -8.007 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.260 6.260 3 C 0.035 3.965 4 C -0.165 4.165 5 C -0.135 4.135 6 C 0.044 3.956 7 N -0.226 5.226 8 H 0.277 0.723 9 C 0.055 3.945 10 C -0.357 4.357 11 C 0.035 3.965 12 N -0.303 5.303 13 C -0.065 4.065 14 C 0.008 3.992 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.802 3.198 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.202 1.202 23 C -0.088 4.088 24 C -0.129 4.129 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.190 0.810 29 H 0.201 0.799 30 H 0.223 0.777 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.065 0.935 34 H -0.003 1.003 35 H -0.002 1.002 36 H 0.074 0.926 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.249 11.646 -7.802 28.009 hybrid contribution 1.455 0.303 0.328 1.522 sum -22.793 11.949 -7.473 26.799 Atomic orbital electron populations 1.23373 0.76176 1.05467 1.02685 1.86095 1.23766 1.26857 1.89284 1.18905 0.91150 0.85780 1.00671 1.21474 1.01642 0.90379 1.03039 1.20849 0.90037 0.99662 1.02971 1.17827 0.92753 0.84579 1.00401 1.41095 1.05372 1.06775 1.69311 0.72342 1.21706 0.82137 1.00588 0.90116 1.22211 1.00576 0.92115 1.20755 1.21808 0.92535 0.90431 0.91684 1.72610 1.06394 1.31043 1.20237 1.22070 0.86847 0.99272 0.98304 1.18829 0.94681 0.93894 0.91788 1.21619 0.92172 1.43577 1.00965 0.91643 1.26157 1.05194 0.94236 0.94527 1.70172 1.37446 1.44471 1.05509 0.85196 0.77589 0.78128 0.78857 1.18159 1.19778 1.20171 1.18211 0.90260 0.92817 1.07464 1.20195 0.92598 0.97256 1.02823 0.87097 0.91167 0.90891 0.81005 0.79877 0.77704 0.85430 0.92359 0.93494 1.00307 1.00172 0.92591 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.35 -8.79 10.49 -93.17 -0.98 -9.77 16 3 C 0.08 2.14 6.68 22.50 0.15 2.29 16 4 C -0.15 -2.45 9.01 22.38 0.20 -2.25 16 5 C -0.11 -1.67 9.88 22.38 0.22 -1.45 16 6 C 0.15 3.30 6.67 38.87 0.26 3.56 16 7 N -0.61 -9.51 5.31 -187.98 -1.00 -10.51 16 8 H 0.44 2.20 8.76 -92.71 -0.81 1.39 16 9 C 0.18 3.64 11.06 83.18 0.92 4.56 16 10 C -0.33 -10.99 9.35 23.66 0.22 -10.77 16 11 C 0.22 8.96 6.97 44.02 0.31 9.27 16 12 N -0.59 -29.75 9.97 -329.80 -3.29 -33.04 16 13 C 0.06 3.42 6.17 86.38 0.53 3.95 16 14 C 0.05 2.87 5.30 29.85 0.16 3.03 16 15 C -0.55 -34.27 9.11 25.60 0.23 -34.04 16 16 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 17 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 18 N -0.94 -61.61 13.29 21.45 0.28 -61.33 16 19 Si 0.98 46.75 29.54 68.60 2.03 48.78 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 C -0.08 -2.84 5.89 -19.97 -0.12 -2.95 16 24 C -0.11 -3.79 9.58 22.52 0.22 -3.58 16 25 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.07 0.64 7.65 -2.38 -0.02 0.62 16 28 H 0.17 1.46 6.26 -2.91 -0.02 1.44 16 29 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 30 H 0.21 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.13 4.67 6.02 -2.91 -0.02 4.66 16 32 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.05 2.32 5.34 -2.38 -0.01 2.31 16 34 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 35 H -0.02 -1.41 8.14 -2.38 -0.02 -1.42 16 36 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 37 H 0.11 4.54 7.71 -2.91 -0.02 4.52 16 Total: -1.00 -90.94 314.99 2.21 -88.73 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 0.28 Total: 3.93 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 4.88 Total: -26.79 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.00 Total: -104.88 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.98 Total: -9.77 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -90.94 2.21 -88.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893128829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.069 kcal (2) G-P(sol) polarization free energy of solvation -90.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds