Wall clock time and date at job start Mon Mar 30 2020 02:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00089 * 2 1 4 4 H 1.48503 * 109.47089 * 269.99762 * 3 2 1 5 5 H 1.48497 * 109.47626 * 29.99787 * 3 2 1 6 6 H 1.48496 * 109.47419 * 150.00268 * 3 2 1 7 7 C 1.37883 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00333 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99519 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.67101 * 61.77923 * 9 7 2 11 11 C 1.54894 * 110.75647 * 298.54930 * 9 7 2 12 12 C 1.54265 * 104.19419 * 203.55857 * 11 9 7 13 13 C 1.53880 * 106.59824 * 23.61250 * 12 11 9 14 14 H 1.09002 * 110.03038 * 240.66718 * 13 12 11 15 15 N 1.46493 * 110.03286 * 119.28584 * 13 12 11 16 16 C 1.38261 * 120.00499 * 86.45329 * 15 13 12 17 17 C 1.36179 * 119.83327 * 359.97438 * 16 15 13 18 18 C 1.40030 * 120.25399 * 180.02562 * 17 16 15 19 19 C 1.36277 * 119.84014 * 0.02562 * 18 17 16 20 20 C 1.40661 * 119.39765 * 359.97438 * 19 18 17 21 21 N 1.32367 * 133.46232 * 180.02562 * 20 19 18 22 22 N 1.28672 * 109.55161 * 180.02562 * 21 20 19 23 23 C 1.30701 * 110.35156 * 359.74255 * 22 21 20 24 24 N 1.36373 * 107.45990 * 0.40506 * 23 22 21 25 25 C 1.54262 * 106.59856 * 359.97438 * 13 12 11 26 26 H 0.97000 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08995 * 110.48520 * 84.87886 * 11 9 7 28 28 H 1.09004 * 110.48531 * 322.23480 * 11 9 7 29 29 H 1.08997 * 110.03454 * 264.32283 * 12 11 9 30 30 H 1.09002 * 110.07060 * 142.91419 * 12 11 9 31 31 H 0.97002 * 119.99978 * 266.44428 * 15 13 12 32 32 H 1.08002 * 119.86916 * 0.02747 * 17 16 15 33 33 H 1.07999 * 120.07310 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.29695 * 180.02562 * 19 18 17 35 35 H 1.08003 * 126.26893 * 180.02562 * 23 22 21 36 36 H 1.09001 * 110.48410 * 95.07281 * 25 13 12 37 37 H 1.09001 * 110.48408 * 217.71514 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8967 -0.7113 0.8981 11 6 4.0600 -0.5028 -1.2730 12 6 5.4759 -1.0911 -1.4428 13 6 5.4787 -2.4470 -0.7152 14 1 6.2179 -2.4394 0.0858 15 7 5.7767 -3.5241 -1.6623 16 6 7.0895 -3.8591 -1.9378 17 6 8.1031 -3.1851 -1.3270 18 6 9.4359 -3.5166 -1.5999 19 6 9.7191 -4.5174 -2.4805 20 6 8.6639 -5.2065 -3.1052 21 7 8.6161 -6.1975 -3.9814 22 7 7.3889 -6.4776 -4.2481 23 6 6.5872 -5.7014 -3.5676 24 7 7.3637 -4.8637 -2.8226 25 6 4.0645 -2.6350 -0.1282 26 1 -0.4850 0.8400 0.0004 27 1 4.1100 0.5765 -1.1294 28 1 3.4400 -0.7455 -2.1361 29 1 6.2132 -0.4252 -0.9944 30 1 5.6971 -1.2345 -2.5005 31 1 5.0529 -4.0025 -2.0962 32 1 7.8780 -2.3918 -0.6296 33 1 10.2374 -2.9799 -1.1142 34 1 10.7444 -4.7795 -2.6961 35 1 5.5077 -5.7163 -3.5953 36 1 3.4450 -3.2220 -0.8062 37 1 4.1181 -3.1119 0.8505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894043346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:53 Heat of formation + Delta-G solvation = 111.122200 kcal Electronic energy + Delta-G solvation = -20377.099320 eV Core-core repulsion = 17348.933969 eV Total energy + Delta-G solvation = -3028.165351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.54883 -39.43814 -37.63988 -35.07385 -33.53243 -32.26467 -30.64113 -28.95504 -28.75654 -27.47479 -24.37712 -23.71997 -23.31066 -21.98119 -20.13422 -19.75723 -18.52056 -17.73189 -17.02421 -16.64606 -16.26114 -15.69695 -15.35989 -15.15459 -14.72688 -14.15684 -13.37170 -13.12880 -12.87586 -12.78482 -12.29619 -12.22601 -11.99005 -11.76620 -11.44683 -11.27235 -11.12236 -10.69614 -10.63047 -10.44088 -10.20494 -10.04806 -9.93443 -9.63380 -9.24763 -9.19500 -8.68762 -7.41417 -6.21286 -4.22074 0.78630 1.06163 1.91636 2.69479 3.05028 3.17181 3.25648 3.28525 3.34782 4.10063 4.28356 4.42748 4.61009 4.76000 4.84177 4.94676 5.04085 5.14568 5.17870 5.25698 5.58289 5.65437 5.74438 5.87926 5.92190 5.97699 6.11791 6.16624 6.18509 6.24421 6.35703 6.51354 6.54984 6.63364 6.83616 6.94352 7.30101 7.30452 7.59159 8.35542 8.48251 8.81098 9.40511 10.91810 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035424 B = 0.004160 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.238095 B = 6729.089318 C = 7197.800836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.037 0.963 11 C -0.132 4.132 12 C -0.138 4.138 13 C 0.145 3.855 14 H 0.087 0.913 15 N -0.716 5.716 16 C 0.414 3.586 17 C -0.264 4.264 18 C -0.018 4.018 19 C -0.170 4.170 20 C 0.241 3.759 21 N -0.316 5.316 22 N -0.250 5.250 23 C 0.105 3.895 24 N -0.419 5.419 25 C -0.110 4.110 26 H 0.265 0.735 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.404 0.596 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.220 0.780 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.901 -4.125 -1.540 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.002 4.002 10 H 0.055 0.945 11 C -0.169 4.169 12 C -0.177 4.177 13 C 0.042 3.958 14 H 0.105 0.895 15 N -0.344 5.344 16 C 0.203 3.797 17 C -0.293 4.293 18 C -0.043 4.043 19 C -0.194 4.194 20 C -0.007 4.007 21 N -0.160 5.160 22 N -0.087 5.087 23 C -0.178 4.178 24 N -0.105 5.105 25 C -0.148 4.148 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.044 -5.117 -2.513 17.027 hybrid contribution -0.588 1.785 0.562 1.961 sum 15.456 -3.332 -1.951 15.931 Atomic orbital electron populations 1.69892 1.06344 1.27123 1.50276 1.24995 0.94651 0.99068 0.94255 0.86897 0.79919 0.83673 0.78335 1.20426 1.22118 1.18974 1.20925 0.88396 0.94517 1.51545 0.90817 1.20053 0.96773 0.90165 0.93196 0.94544 1.22844 0.93515 0.98943 1.01646 1.22680 0.99478 0.95526 0.99976 1.22101 0.99395 0.84839 0.89499 0.89534 1.45135 1.02121 1.39222 1.47896 1.17505 0.87989 0.86148 0.88035 1.20183 0.90682 1.08222 1.10248 1.20839 0.96023 0.93801 0.93651 1.19882 0.97020 1.00011 1.02528 1.22395 0.83494 0.96697 0.98129 1.74987 1.11396 1.13812 1.15852 1.74080 0.96580 1.19762 1.18316 1.26347 1.00120 0.93750 0.97540 1.44036 1.09913 1.25445 1.31132 1.22591 0.91560 1.00738 0.99919 0.92514 0.93226 0.91341 0.91755 0.92015 0.76032 0.83017 0.83985 0.83296 0.76350 0.91182 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.96 55.43 0.77 -25.36 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 3 Si 0.88 20.29 24.46 -169.99 -4.16 16.14 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -5.71 6.48 56.52 0.37 -5.34 16 7 C -0.52 -13.16 9.13 -34.44 -0.31 -13.48 16 8 H 0.07 2.05 8.03 -52.49 -0.42 1.63 16 9 C 0.02 0.35 2.29 -89.79 -0.21 0.14 16 10 H 0.04 0.75 7.36 -51.93 -0.38 0.37 16 11 C -0.13 -2.40 5.08 -25.07 -0.13 -2.53 16 12 C -0.14 -1.91 6.56 -25.61 -0.17 -2.08 16 13 C 0.15 1.82 2.85 -66.82 -0.19 1.63 16 14 H 0.09 0.96 6.46 -51.93 -0.34 0.62 16 15 N -0.72 -8.05 5.12 -52.78 -0.27 -8.32 16 16 C 0.41 4.81 7.58 -153.04 -1.16 3.65 16 17 C -0.26 -2.70 9.15 -39.65 -0.36 -3.07 16 18 C -0.02 -0.16 10.05 -39.62 -0.40 -0.56 16 19 C -0.17 -1.83 10.10 -39.37 -0.40 -2.22 16 20 C 0.24 3.36 7.92 -156.00 -1.24 2.13 16 21 N -0.32 -5.11 12.30 31.13 0.38 -4.73 16 22 N -0.25 -3.90 12.18 29.89 0.36 -3.54 16 23 C 0.10 1.33 12.52 -88.98 -1.11 0.21 16 24 N -0.42 -5.37 2.97 -63.21 -0.19 -5.56 16 25 C -0.11 -1.73 5.95 -25.09 -0.15 -1.88 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.05 0.95 4.90 -51.93 -0.25 0.69 16 28 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 31 H 0.40 4.20 7.79 -40.82 -0.32 3.88 16 32 H 0.15 1.37 6.09 -52.49 -0.32 1.05 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.22 1.89 7.87 -52.48 -0.41 1.48 16 36 H 0.07 1.12 7.63 -51.93 -0.40 0.73 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -30.85 299.12 -9.04 -39.89 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.53 Total: 3.18 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -5.92 Total: -16.20 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 1.06 Total: -47.51 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.16 Total: 16.14 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.85 -9.04 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894043346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.012 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds