Wall clock time and date at job start Mon Mar 30 2020 02:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00089 * 2 1 4 4 H 1.48503 * 109.47089 * 269.99762 * 3 2 1 5 5 H 1.48497 * 109.47626 * 29.99787 * 3 2 1 6 6 H 1.48496 * 109.47419 * 150.00268 * 3 2 1 7 7 C 1.37883 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00333 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99519 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.67101 * 61.77923 * 9 7 2 11 11 C 1.54894 * 110.75647 * 298.54930 * 9 7 2 12 12 C 1.54265 * 104.19419 * 203.55857 * 11 9 7 13 13 C 1.53880 * 106.59824 * 23.61250 * 12 11 9 14 14 H 1.09002 * 110.03038 * 240.66718 * 13 12 11 15 15 N 1.46493 * 110.03286 * 119.28584 * 13 12 11 16 16 C 1.38261 * 120.00499 * 86.45329 * 15 13 12 17 17 C 1.36179 * 119.83327 * 359.97438 * 16 15 13 18 18 C 1.40030 * 120.25399 * 180.02562 * 17 16 15 19 19 C 1.36277 * 119.84014 * 0.02562 * 18 17 16 20 20 C 1.40661 * 119.39765 * 359.97438 * 19 18 17 21 21 N 1.32367 * 133.46232 * 180.02562 * 20 19 18 22 22 N 1.28672 * 109.55161 * 180.02562 * 21 20 19 23 23 C 1.30701 * 110.35156 * 359.74255 * 22 21 20 24 24 N 1.36373 * 107.45990 * 0.40506 * 23 22 21 25 25 C 1.54262 * 106.59856 * 359.97438 * 13 12 11 26 26 H 0.97000 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08995 * 110.48520 * 84.87886 * 11 9 7 28 28 H 1.09004 * 110.48531 * 322.23480 * 11 9 7 29 29 H 1.08997 * 110.03454 * 264.32283 * 12 11 9 30 30 H 1.09002 * 110.07060 * 142.91419 * 12 11 9 31 31 H 0.97002 * 119.99978 * 266.44428 * 15 13 12 32 32 H 1.08002 * 119.86916 * 0.02747 * 17 16 15 33 33 H 1.07999 * 120.07310 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.29695 * 180.02562 * 19 18 17 35 35 H 1.08003 * 126.26893 * 180.02562 * 23 22 21 36 36 H 1.09001 * 110.48410 * 95.07281 * 25 13 12 37 37 H 1.09001 * 110.48408 * 217.71514 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8967 -0.7113 0.8981 11 6 4.0600 -0.5028 -1.2730 12 6 5.4759 -1.0911 -1.4428 13 6 5.4787 -2.4470 -0.7152 14 1 6.2179 -2.4394 0.0858 15 7 5.7767 -3.5241 -1.6623 16 6 7.0895 -3.8591 -1.9378 17 6 8.1031 -3.1851 -1.3270 18 6 9.4359 -3.5166 -1.5999 19 6 9.7191 -4.5174 -2.4805 20 6 8.6639 -5.2065 -3.1052 21 7 8.6161 -6.1975 -3.9814 22 7 7.3889 -6.4776 -4.2481 23 6 6.5872 -5.7014 -3.5676 24 7 7.3637 -4.8637 -2.8226 25 6 4.0645 -2.6350 -0.1282 26 1 -0.4850 0.8400 0.0004 27 1 4.1100 0.5765 -1.1294 28 1 3.4400 -0.7455 -2.1361 29 1 6.2132 -0.4252 -0.9944 30 1 5.6971 -1.2345 -2.5005 31 1 5.0529 -4.0025 -2.0962 32 1 7.8780 -2.3918 -0.6296 33 1 10.2374 -2.9799 -1.1142 34 1 10.7444 -4.7795 -2.6961 35 1 5.5077 -5.7163 -3.5953 36 1 3.4450 -3.2220 -0.8062 37 1 4.1181 -3.1119 0.8505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894043346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:52 Heat of formation + Delta-G solvation = 93.786811 kcal Electronic energy + Delta-G solvation = -20377.851039 eV Core-core repulsion = 17348.933969 eV Total energy + Delta-G solvation = -3028.917070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.48571 -40.44007 -38.74841 -36.10105 -34.77247 -33.91080 -31.59180 -30.26971 -29.90126 -28.59770 -25.82521 -24.67786 -24.38142 -22.95465 -21.28588 -21.18134 -19.50655 -18.90166 -18.44280 -17.61910 -17.22794 -16.86458 -16.59232 -16.22033 -15.71887 -15.50945 -14.83472 -14.39455 -14.28719 -14.10626 -13.33247 -13.21353 -13.00477 -12.90425 -12.69895 -12.60422 -12.26467 -12.15569 -11.78233 -11.67743 -11.63335 -11.50919 -11.24498 -11.04725 -10.95135 -10.69143 -10.16580 -8.28636 -8.27276 -6.31941 -0.03179 0.19693 1.03214 1.35222 1.38659 1.48704 1.72472 2.16110 2.35602 2.52160 3.08627 3.25735 3.60927 3.70158 3.83557 3.85318 3.89554 4.08435 4.28408 4.34865 4.59588 4.65876 4.69256 4.81320 4.88171 4.92820 4.95376 5.03980 5.10744 5.14669 5.26664 5.41190 5.43470 5.48319 5.65324 5.73906 5.78003 6.02886 6.31761 6.43944 6.76240 7.34358 7.49605 8.88892 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035424 B = 0.004160 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.238095 B = 6729.089318 C = 7197.800836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.303 1.303 6 H -0.233 1.233 7 C -0.515 4.515 8 H 0.031 0.969 9 C 0.008 3.992 10 H 0.042 0.958 11 C -0.132 4.132 12 C -0.128 4.128 13 C 0.162 3.838 14 H 0.116 0.884 15 N -0.716 5.716 16 C 0.400 3.600 17 C -0.257 4.257 18 C 0.002 3.998 19 C -0.186 4.186 20 C 0.229 3.771 21 N -0.363 5.363 22 N -0.288 5.288 23 C 0.107 3.893 24 N -0.422 5.422 25 C -0.106 4.106 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.406 0.594 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.166 0.834 35 H 0.250 0.750 36 H 0.057 0.943 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.292 -2.645 -0.528 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.231 1.231 6 H -0.156 1.156 7 C -0.553 4.553 8 H 0.049 0.951 9 C -0.011 4.011 10 H 0.060 0.940 11 C -0.170 4.170 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.134 0.866 15 N -0.344 5.344 16 C 0.190 3.810 17 C -0.286 4.286 18 C -0.023 4.023 19 C -0.210 4.210 20 C -0.019 4.019 21 N -0.208 5.208 22 N -0.124 5.124 23 C -0.176 4.176 24 N -0.108 5.108 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.242 0.758 32 H 0.192 0.808 33 H 0.202 0.798 34 H 0.183 0.817 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.481 -3.671 -1.513 19.881 hybrid contribution -1.699 1.282 0.305 2.150 sum 17.782 -2.389 -1.208 17.982 Atomic orbital electron populations 1.70068 1.08497 1.27922 1.53131 1.25913 0.95307 1.03210 0.94341 0.85892 0.79644 0.78552 0.78847 1.19655 1.23097 1.15640 1.21348 0.91749 0.92660 1.49509 0.95073 1.20038 0.92980 0.93679 0.94420 0.93981 1.22693 0.96224 0.98645 0.99431 1.22626 0.96770 0.96266 1.00959 1.21853 0.97746 0.84469 0.90125 0.86585 1.44942 1.02313 1.39159 1.48001 1.17741 0.88340 0.86421 0.88509 1.20662 0.90783 1.07752 1.09362 1.21309 0.96700 0.92382 0.91924 1.20276 0.97107 1.00528 1.03043 1.22890 0.84687 0.96473 0.97894 1.74867 1.11908 1.15915 1.18066 1.73963 0.97046 1.21426 1.19977 1.26906 1.01154 0.92953 0.96622 1.44100 1.09592 1.25745 1.31378 1.22442 0.93547 0.97788 1.00603 0.92782 0.93693 0.93563 0.88930 0.91410 0.75816 0.80786 0.79819 0.81699 0.73460 0.92400 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.82 13.96 21.45 0.30 -57.52 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.94 41.43 24.46 68.60 1.68 43.11 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.23 -8.95 6.48 99.48 0.64 -8.30 16 7 C -0.51 -26.81 9.13 25.60 0.23 -26.58 16 8 H 0.03 1.82 8.03 -2.91 -0.02 1.80 16 9 C 0.01 0.31 2.29 -10.25 -0.02 0.28 16 10 H 0.04 1.59 7.36 -2.39 -0.02 1.58 16 11 C -0.13 -4.48 5.08 31.67 0.16 -4.32 16 12 C -0.13 -2.93 6.56 31.32 0.21 -2.73 16 13 C 0.16 3.36 2.85 45.72 0.13 3.49 16 14 H 0.12 1.83 6.46 -2.39 -0.02 1.81 16 15 N -0.72 -13.65 5.12 -320.90 -1.64 -15.29 16 16 C 0.40 7.83 7.58 131.30 0.99 8.82 16 17 C -0.26 -3.88 9.15 22.22 0.20 -3.68 16 18 C 0.00 0.02 10.05 22.25 0.22 0.25 16 19 C -0.19 -3.42 10.10 22.40 0.23 -3.19 16 20 C 0.23 6.07 7.92 133.99 1.06 7.13 16 21 N -0.36 -11.85 12.30 -55.43 -0.68 -12.54 16 22 N -0.29 -9.11 12.18 -59.34 -0.72 -9.83 16 23 C 0.11 2.64 12.52 179.78 2.25 4.89 16 24 N -0.42 -10.03 2.97 -353.91 -1.05 -11.08 16 25 C -0.11 -3.09 5.95 31.66 0.19 -2.90 16 26 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.04 1.56 4.90 -2.39 -0.01 1.55 16 28 H 0.05 1.75 8.04 -2.38 -0.02 1.73 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.53 7.92 -2.39 -0.02 1.51 16 31 H 0.41 7.51 7.79 -92.71 -0.72 6.78 16 32 H 0.17 1.88 6.09 -2.91 -0.02 1.86 16 33 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.25 4.02 7.87 -2.91 -0.02 4.00 16 36 H 0.06 1.82 7.63 -2.39 -0.02 1.80 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.75 299.12 4.51 -67.24 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.32 Total: 13.51 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 6.32 Total: -17.59 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.80 Total: -106.26 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.68 Total: 43.11 kcal Total: -71.75 4.51 -67.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894043346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.029 kcal (2) G-P(sol) polarization free energy of solvation -71.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds