Wall clock time and date at job start Mon Mar 30 2020 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00365 * 2 1 4 4 H 1.48503 * 109.47056 * 264.78168 * 3 2 1 5 5 H 1.48501 * 109.47031 * 24.78008 * 3 2 1 6 6 H 1.48495 * 109.47410 * 144.78101 * 3 2 1 7 7 C 1.37882 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00144 * 5.77981 * 7 2 1 9 9 C 1.50693 * 120.00034 * 185.76878 * 7 2 1 10 10 H 1.08996 * 109.53673 * 335.27707 * 9 7 2 11 11 C 1.53124 * 109.50072 * 95.37401 * 9 7 2 12 12 C 1.53118 * 109.16093 * 177.59924 * 11 9 7 13 13 C 1.53038 * 109.27662 * 302.34193 * 12 11 9 14 14 N 1.46843 * 109.52417 * 59.18211 * 13 12 11 15 15 C 1.38261 * 111.00247 * 174.16505 * 14 13 12 16 16 C 1.36168 * 119.84296 * 124.25116 * 15 14 13 17 17 C 1.40026 * 120.26362 * 180.02562 * 16 15 14 18 18 C 1.36279 * 119.83232 * 359.97200 * 17 16 15 19 19 C 1.40662 * 119.40180 * 0.02562 * 18 17 16 20 20 N 1.32361 * 133.46136 * 180.02562 * 19 18 17 21 21 N 1.28672 * 109.55071 * 179.97438 * 20 19 18 22 22 C 1.30695 * 110.34833 * 0.02562 * 21 20 19 23 23 N 1.36368 * 107.46827 * 359.97438 * 22 21 20 24 24 C 1.46850 * 111.19680 * 298.25606 * 14 13 12 25 25 H 0.97005 * 119.99580 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.52173 * 297.50221 * 11 9 7 27 27 H 1.08999 * 109.52473 * 57.68837 * 11 9 7 28 28 H 1.08993 * 109.51010 * 62.28331 * 12 11 9 29 29 H 1.09002 * 109.50185 * 182.36599 * 12 11 9 30 30 H 1.09004 * 109.46597 * 299.16556 * 13 12 11 31 31 H 1.08995 * 109.46563 * 179.20064 * 13 12 11 32 32 H 1.08001 * 119.86396 * 359.95243 * 16 15 14 33 33 H 1.07993 * 120.08360 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.29670 * 180.02562 * 18 17 16 35 35 H 1.08005 * 126.26230 * 179.97438 * 22 21 20 36 36 H 1.09007 * 109.46292 * 181.75535 * 24 14 13 37 37 H 1.08994 * 109.46559 * 301.72833 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3959 2.6820 0.5868 6 1 3.4873 1.4744 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1271 -0.0932 9 6 3.5057 -1.1975 0.1317 10 1 3.9042 -0.2450 -0.2175 11 6 3.8901 -1.4052 1.5993 12 6 5.4156 -1.4673 1.7153 13 6 5.9442 -2.5969 0.8283 14 7 5.5510 -2.3516 -0.5651 15 6 6.1217 -3.2833 -1.4123 16 6 5.3297 -4.0303 -2.2303 17 6 5.8984 -4.9767 -3.0914 18 6 7.2500 -5.1499 -3.1109 19 6 8.0581 -4.3726 -2.2616 20 7 9.3639 -4.3085 -2.0548 21 7 9.6148 -3.4198 -1.1588 22 6 8.5054 -2.8686 -0.7421 23 7 7.4779 -3.4505 -1.4243 24 6 4.0897 -2.3349 -0.7093 25 1 -0.4850 0.8401 0.0004 26 1 3.5130 -0.5744 2.1957 27 1 3.4590 -2.3390 1.9601 28 1 5.8442 -0.5191 1.3909 29 1 5.6943 -1.6570 2.7518 30 1 5.5260 -3.5466 1.1619 31 1 7.0313 -2.6347 0.8976 32 1 4.2586 -3.8930 -2.2138 33 1 5.2675 -5.5678 -3.7386 34 1 7.6966 -5.8774 -3.7724 35 1 8.4184 -2.0942 0.0057 36 1 3.8298 -2.1823 -1.7569 37 1 3.6801 -3.2858 -0.3685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894484702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:47 Heat of formation + Delta-G solvation = 121.649311 kcal Electronic energy + Delta-G solvation = -21018.571834 eV Core-core repulsion = 17990.862972 eV Total energy + Delta-G solvation = -3027.708861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.53562 -39.95970 -37.41092 -34.61087 -33.28219 -32.57278 -30.77282 -30.47025 -28.53923 -25.61266 -24.94808 -23.44110 -23.19765 -21.65463 -21.59856 -19.30897 -18.03661 -17.55623 -16.84226 -16.49181 -16.26567 -15.94933 -14.85301 -14.59753 -14.43788 -14.12929 -13.74096 -13.08162 -12.86076 -12.74121 -12.45118 -12.31266 -12.00177 -11.67916 -11.41393 -11.33117 -11.19712 -10.94596 -10.58713 -10.53215 -10.11414 -9.94837 -9.82056 -9.59189 -9.27355 -9.04768 -8.70317 -7.59149 -6.26750 -4.28989 0.65666 1.12303 2.14996 2.71836 3.17185 3.26730 3.27770 3.29350 3.63293 4.17598 4.26048 4.49511 4.67490 4.71548 4.92888 5.02181 5.05946 5.07046 5.27856 5.40788 5.54918 5.60096 5.71419 5.81380 5.85746 5.91177 5.96681 6.09101 6.13671 6.23336 6.25630 6.46600 6.50714 6.72118 6.91829 7.05844 7.06489 7.20091 7.55456 8.28710 8.54440 8.76175 9.35283 10.85693 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.005352 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.063063 B = 5230.707877 C = 5708.185606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.043 0.957 11 C -0.116 4.116 12 C -0.122 4.122 13 C 0.052 3.948 14 N -0.491 5.491 15 C 0.317 3.683 16 C -0.219 4.219 17 C -0.042 4.042 18 C -0.136 4.136 19 C 0.222 3.778 20 N -0.309 5.309 21 N -0.255 5.255 22 C 0.115 3.885 23 N -0.397 5.397 24 C 0.071 3.929 25 H 0.266 0.734 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.223 0.777 36 H 0.086 0.914 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 -6.918 -1.596 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.093 0.907 9 C 0.001 3.999 10 H 0.061 0.939 11 C -0.154 4.154 12 C -0.160 4.160 13 C -0.073 4.073 14 N -0.206 5.206 15 C 0.113 3.887 16 C -0.245 4.245 17 C -0.067 4.067 18 C -0.158 4.158 19 C -0.027 4.027 20 N -0.155 5.155 21 N -0.094 5.094 22 C -0.168 4.168 23 N -0.080 5.080 24 C -0.054 4.054 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.596 -6.494 -1.669 13.395 hybrid contribution -1.248 0.789 0.323 1.511 sum 10.349 -5.705 -1.346 11.893 Atomic orbital electron populations 1.69892 1.06361 1.27327 1.49394 1.25027 0.94666 0.99011 0.93876 0.86872 0.80197 0.83575 0.79000 1.20056 1.21497 1.18840 1.20809 0.88453 0.94818 1.51671 0.90721 1.19215 0.96470 0.93716 0.90453 0.93893 1.21956 0.91426 1.01683 1.00378 1.21749 0.99020 0.97565 0.97681 1.22394 1.00274 0.99519 0.85084 1.58515 1.14327 1.41571 1.06198 1.18822 0.80246 0.91460 0.98178 1.21093 1.01344 0.99312 1.02780 1.21021 0.94127 0.95610 0.95979 1.20059 0.92279 1.02202 1.01300 1.22382 0.91117 0.93750 0.95490 1.74954 1.08415 1.17179 1.14942 1.74103 1.22676 1.05278 1.07301 1.26470 0.81614 1.04798 1.03903 1.43910 1.06305 1.28429 1.29362 1.22755 0.78623 1.01199 1.02842 0.92366 0.92114 0.92609 0.91451 0.91594 0.93080 0.90909 0.81815 0.83634 0.83029 0.76082 0.89582 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 20.02 27.02 -169.99 -4.59 15.43 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -5.73 6.78 56.52 0.38 -5.35 16 7 C -0.52 -12.88 8.86 -34.44 -0.31 -13.18 16 8 H 0.07 2.01 8.06 -52.48 -0.42 1.59 16 9 C 0.02 0.42 1.95 -91.69 -0.18 0.25 16 10 H 0.04 0.92 5.25 -51.93 -0.27 0.65 16 11 C -0.12 -2.09 5.27 -26.61 -0.14 -2.23 16 12 C -0.12 -1.75 6.09 -26.65 -0.16 -1.91 16 13 C 0.05 0.70 5.24 -3.84 -0.02 0.68 16 14 N -0.49 -7.43 4.64 -173.15 -0.80 -8.23 16 15 C 0.32 4.54 6.40 -153.04 -0.98 3.56 16 16 C -0.22 -2.75 8.76 -39.66 -0.35 -3.10 16 17 C -0.04 -0.44 10.05 -39.62 -0.40 -0.84 16 18 C -0.14 -1.59 10.10 -39.37 -0.40 -1.99 16 19 C 0.22 3.34 7.92 -156.01 -1.23 2.11 16 20 N -0.31 -5.27 12.30 31.13 0.38 -4.89 16 21 N -0.26 -4.25 12.18 29.89 0.36 -3.88 16 22 C 0.11 1.65 11.25 -88.99 -1.00 0.65 16 23 N -0.40 -5.87 2.91 -63.22 -0.18 -6.06 16 24 C 0.07 1.19 3.39 -3.83 -0.01 1.17 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.87 4.67 -51.93 -0.24 0.63 16 32 H 0.16 1.95 5.64 -52.49 -0.30 1.65 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.22 2.52 6.65 -52.48 -0.35 2.17 16 36 H 0.09 1.44 6.94 -51.93 -0.36 1.08 16 37 H 0.05 0.85 7.70 -51.93 -0.40 0.45 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -29.67 294.80 -9.35 -39.02 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.46 Total: 1.62 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -5.28 Total: -12.88 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.53 Total: -47.63 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.59 Total: 15.43 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.67 -9.35 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.670 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds