Wall clock time and date at job start Mon Mar 30 2020 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00365 * 2 1 4 4 H 1.48503 * 109.47056 * 264.78168 * 3 2 1 5 5 H 1.48501 * 109.47031 * 24.78008 * 3 2 1 6 6 H 1.48495 * 109.47410 * 144.78101 * 3 2 1 7 7 C 1.37882 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00144 * 5.77981 * 7 2 1 9 9 C 1.50693 * 120.00034 * 185.76878 * 7 2 1 10 10 H 1.08996 * 109.53673 * 335.27707 * 9 7 2 11 11 C 1.53124 * 109.50072 * 95.37401 * 9 7 2 12 12 C 1.53118 * 109.16093 * 177.59924 * 11 9 7 13 13 C 1.53038 * 109.27662 * 302.34193 * 12 11 9 14 14 N 1.46843 * 109.52417 * 59.18211 * 13 12 11 15 15 C 1.38261 * 111.00247 * 174.16505 * 14 13 12 16 16 C 1.36168 * 119.84296 * 124.25116 * 15 14 13 17 17 C 1.40026 * 120.26362 * 180.02562 * 16 15 14 18 18 C 1.36279 * 119.83232 * 359.97200 * 17 16 15 19 19 C 1.40662 * 119.40180 * 0.02562 * 18 17 16 20 20 N 1.32361 * 133.46136 * 180.02562 * 19 18 17 21 21 N 1.28672 * 109.55071 * 179.97438 * 20 19 18 22 22 C 1.30695 * 110.34833 * 0.02562 * 21 20 19 23 23 N 1.36368 * 107.46827 * 359.97438 * 22 21 20 24 24 C 1.46850 * 111.19680 * 298.25606 * 14 13 12 25 25 H 0.97005 * 119.99580 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.52173 * 297.50221 * 11 9 7 27 27 H 1.08999 * 109.52473 * 57.68837 * 11 9 7 28 28 H 1.08993 * 109.51010 * 62.28331 * 12 11 9 29 29 H 1.09002 * 109.50185 * 182.36599 * 12 11 9 30 30 H 1.09004 * 109.46597 * 299.16556 * 13 12 11 31 31 H 1.08995 * 109.46563 * 179.20064 * 13 12 11 32 32 H 1.08001 * 119.86396 * 359.95243 * 16 15 14 33 33 H 1.07993 * 120.08360 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.29670 * 180.02562 * 18 17 16 35 35 H 1.08005 * 126.26230 * 179.97438 * 22 21 20 36 36 H 1.09007 * 109.46292 * 181.75535 * 24 14 13 37 37 H 1.08994 * 109.46559 * 301.72833 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3959 2.6820 0.5868 6 1 3.4873 1.4744 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1271 -0.0932 9 6 3.5057 -1.1975 0.1317 10 1 3.9042 -0.2450 -0.2175 11 6 3.8901 -1.4052 1.5993 12 6 5.4156 -1.4673 1.7153 13 6 5.9442 -2.5969 0.8283 14 7 5.5510 -2.3516 -0.5651 15 6 6.1217 -3.2833 -1.4123 16 6 5.3297 -4.0303 -2.2303 17 6 5.8984 -4.9767 -3.0914 18 6 7.2500 -5.1499 -3.1109 19 6 8.0581 -4.3726 -2.2616 20 7 9.3639 -4.3085 -2.0548 21 7 9.6148 -3.4198 -1.1588 22 6 8.5054 -2.8686 -0.7421 23 7 7.4779 -3.4505 -1.4243 24 6 4.0897 -2.3349 -0.7093 25 1 -0.4850 0.8401 0.0004 26 1 3.5130 -0.5744 2.1957 27 1 3.4590 -2.3390 1.9601 28 1 5.8442 -0.5191 1.3909 29 1 5.6943 -1.6570 2.7518 30 1 5.5260 -3.5466 1.1619 31 1 7.0313 -2.6347 0.8976 32 1 4.2586 -3.8930 -2.2138 33 1 5.2675 -5.5678 -3.7386 34 1 7.6966 -5.8774 -3.7724 35 1 8.4184 -2.0942 0.0057 36 1 3.8298 -2.1823 -1.7569 37 1 3.6801 -3.2858 -0.3685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894484702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:47 Heat of formation + Delta-G solvation = 105.625040 kcal Electronic energy + Delta-G solvation = -21019.266698 eV Core-core repulsion = 17990.862972 eV Total energy + Delta-G solvation = -3028.403726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.61918 -41.13520 -38.54860 -35.90951 -34.66145 -34.02323 -32.28490 -31.56154 -29.61677 -27.25157 -26.13628 -24.56454 -24.34396 -23.00513 -22.72155 -20.69174 -19.28301 -19.06361 -18.14564 -17.59739 -17.40061 -16.97036 -16.24299 -15.86750 -15.81749 -15.29676 -15.17419 -14.58671 -14.35735 -14.02218 -13.53701 -13.41665 -13.09687 -13.02593 -12.90118 -12.68132 -12.50643 -12.23689 -11.89981 -11.85006 -11.71015 -11.42237 -11.31069 -10.99619 -10.80667 -10.65941 -10.19569 -8.64661 -8.29245 -6.33104 -0.33225 0.10835 1.08060 1.35669 1.39298 1.47279 1.61595 2.27706 2.34753 2.53260 3.07896 3.19031 3.50972 3.63085 3.70709 3.85944 3.95928 4.12442 4.15765 4.26321 4.30909 4.43167 4.61230 4.64925 4.69981 4.75122 4.88044 4.90899 4.94596 5.07517 5.17004 5.21785 5.33920 5.48055 5.54052 5.60299 5.69391 5.90177 5.97015 6.30356 6.75577 7.33925 7.42875 8.86816 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.005352 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.063063 B = 5230.707877 C = 5708.185606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.021 3.979 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.511 4.511 8 H 0.042 0.958 9 C 0.018 3.982 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.113 4.113 13 C 0.052 3.948 14 N -0.496 5.496 15 C 0.296 3.704 16 C -0.213 4.213 17 C -0.028 4.028 18 C -0.138 4.138 19 C 0.211 3.789 20 N -0.345 5.345 21 N -0.284 5.284 22 C 0.117 3.883 23 N -0.400 5.400 24 C 0.084 3.916 25 H 0.265 0.735 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.187 0.813 34 H 0.178 0.822 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.437 -7.500 -1.923 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.549 4.549 8 H 0.060 0.940 9 C -0.002 4.002 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.151 4.151 13 C -0.073 4.073 14 N -0.211 5.211 15 C 0.093 3.907 16 C -0.239 4.239 17 C -0.052 4.052 18 C -0.160 4.160 19 C -0.039 4.039 20 N -0.190 5.190 21 N -0.121 5.121 22 C -0.166 4.166 23 N -0.083 5.083 24 C -0.042 4.042 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.204 0.796 34 H 0.195 0.805 35 H 0.264 0.736 36 H 0.102 0.898 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.124 -7.096 -1.998 15.053 hybrid contribution -1.770 0.834 0.386 1.994 sum 11.355 -6.263 -1.612 13.067 Atomic orbital electron populations 1.70034 1.08155 1.27990 1.52303 1.25787 0.95211 1.02505 0.94199 0.85948 0.79533 0.79439 0.79247 1.19749 1.22031 1.16767 1.21109 0.91069 0.93233 1.49523 0.94014 1.19160 0.93436 0.94822 0.92766 0.94663 1.21810 0.94522 1.00898 0.98080 1.21668 0.95686 0.98049 0.99652 1.22458 1.01401 0.99186 0.84210 1.58408 1.12844 1.42732 1.07153 1.18860 0.80216 0.92590 0.99056 1.21415 1.01608 0.98843 1.02012 1.21435 0.94000 0.94608 0.95200 1.20506 0.92563 1.02064 1.00879 1.22905 0.90948 0.94097 0.95904 1.74867 1.09727 1.18327 1.16102 1.74018 1.23933 1.06068 1.08077 1.26939 0.81113 1.04712 1.03846 1.43949 1.06395 1.28482 1.29444 1.22374 0.80108 0.99792 1.01916 0.92589 0.93637 0.92909 0.91378 0.88841 0.92886 0.88985 0.81284 0.79566 0.80494 0.73643 0.89763 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.26 13.96 21.45 0.30 -54.96 16 2 C 0.02 1.12 5.47 84.66 0.46 1.58 16 3 Si 0.93 41.29 27.02 68.60 1.85 43.14 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.24 -9.91 6.78 99.48 0.67 -9.23 16 7 C -0.51 -25.66 8.86 25.60 0.23 -25.44 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 9 C 0.02 0.69 1.95 -11.49 -0.02 0.67 16 10 H 0.04 1.45 5.25 -2.39 -0.01 1.44 16 11 C -0.11 -3.96 5.27 30.68 0.16 -3.80 16 12 C -0.11 -2.89 6.09 30.65 0.19 -2.70 16 13 C 0.05 1.25 5.24 86.33 0.45 1.70 16 14 N -0.50 -13.80 4.64 -701.73 -3.26 -17.06 16 15 C 0.30 7.74 6.40 131.30 0.84 8.58 16 16 C -0.21 -4.71 8.76 22.22 0.19 -4.51 16 17 C -0.03 -0.47 10.05 22.25 0.22 -0.24 16 18 C -0.14 -2.79 10.10 22.41 0.23 -2.56 16 19 C 0.21 5.95 7.92 133.99 1.06 7.01 16 20 N -0.34 -11.42 12.30 -55.43 -0.68 -12.10 16 21 N -0.28 -9.16 12.18 -59.35 -0.72 -9.89 16 22 C 0.12 3.15 11.25 179.78 2.02 5.17 16 23 N -0.40 -10.96 2.91 -353.92 -1.03 -11.99 16 24 C 0.08 2.69 3.39 86.33 0.29 2.98 16 25 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 26 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.09 1.90 4.67 -2.39 -0.01 1.89 16 32 H 0.17 3.56 5.64 -2.91 -0.02 3.54 16 33 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.25 4.94 6.65 -2.91 -0.02 4.92 16 36 H 0.08 2.71 6.94 -2.38 -0.02 2.69 16 37 H 0.06 1.72 7.70 -2.39 -0.02 1.70 16 Total: -1.00 -66.11 294.80 3.84 -62.27 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.06 Total: 12.16 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 6.33 Total: -11.56 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -5.40 Total: -106.00 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.85 Total: 43.14 kcal Total: -66.11 3.84 -62.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.891 kcal (2) G-P(sol) polarization free energy of solvation -66.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds