Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46492 * 120.00067 * 276.65218 * 3 2 1 5 5 C 1.50706 * 109.47494 * 270.00213 * 4 3 2 6 6 H 1.07998 * 119.99587 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00025 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47431 * 89.99565 * 9 7 5 11 11 H 1.48504 * 109.46877 * 209.99467 * 9 7 5 12 12 H 1.48500 * 109.47019 * 329.99486 * 9 7 5 13 13 C 1.34779 * 119.99525 * 96.65896 * 3 2 1 14 14 O 1.21774 * 119.99506 * 186.72627 * 13 3 2 15 15 C 1.46203 * 120.00108 * 6.72675 * 13 3 2 16 16 C 1.41740 * 126.80048 * 332.63044 * 15 13 3 17 17 C 1.34525 * 107.77775 * 179.83430 * 16 15 13 18 18 N 1.36953 * 109.59992 * 0.44562 * 17 16 15 19 19 C 1.36703 * 131.35184 * 179.65856 * 18 17 16 20 20 C 1.34995 * 120.75664 * 180.02562 * 19 18 17 21 21 C 1.40304 * 120.38027 * 0.04672 * 20 19 18 22 22 C 1.36333 * 119.45876 * 359.97242 * 21 20 19 23 23 C 1.36940 * 108.74187 * 359.71694 * 18 17 16 24 24 H 1.08997 * 109.47095 * 59.99760 * 1 2 3 25 25 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46610 * 299.99946 * 1 2 3 27 27 H 1.09005 * 109.47013 * 239.99938 * 2 1 3 28 28 H 1.08996 * 109.46910 * 120.00755 * 2 1 3 29 29 H 1.09002 * 109.47533 * 30.00744 * 4 3 2 30 30 H 1.09005 * 109.46853 * 150.00360 * 4 3 2 31 31 H 0.97001 * 120.00118 * 180.02562 * 8 7 5 32 32 H 1.08007 * 126.10925 * 359.97438 * 16 15 13 33 33 H 1.07996 * 125.19924 * 180.16576 * 17 16 15 34 34 H 1.08008 * 119.61938 * 0.06492 * 19 18 17 35 35 H 1.08007 * 119.81044 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.26929 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.34290 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1240 2.1208 -1.2601 5 6 3.4907 1.9040 -1.8569 6 1 4.2087 1.2776 -1.3485 7 6 3.8245 2.5054 -3.0519 8 7 2.9499 3.2678 -3.6711 9 14 5.5183 2.2361 -3.7919 10 1 5.4859 1.0492 -4.6838 11 1 5.9119 3.4341 -4.5763 12 1 6.5037 2.0110 -2.7040 13 6 2.3706 1.9714 1.1594 14 8 2.6591 3.1543 1.1773 15 6 2.4062 1.1913 2.3954 16 6 1.6374 0.0387 2.6945 17 6 1.9761 -0.3717 3.9301 18 7 2.9236 0.4695 4.4500 19 6 3.5655 0.4710 5.6569 20 6 4.4790 1.4202 5.9518 21 6 4.7845 2.4246 5.0210 22 6 4.1513 2.4349 3.8137 23 6 3.2055 1.4397 3.5255 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3634 1.7650 -1.9551 30 1 1.9745 3.1839 -1.0710 31 1 3.1846 3.6906 -4.5120 32 1 0.9113 -0.4281 2.0454 33 1 1.5608 -1.2304 4.4365 34 1 3.3396 -0.2964 6.3826 35 1 4.9773 1.4066 6.9100 36 1 5.5154 3.1833 5.2590 37 1 4.3752 3.2015 3.0867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896860834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = 56.830654 kcal Electronic energy + Delta-G solvation = -20633.093837 eV Core-core repulsion = 17570.281476 eV Total energy + Delta-G solvation = -3062.812360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.17421 -38.69025 -36.47980 -35.12854 -33.05359 -32.51555 -30.31359 -29.67452 -28.25308 -26.70506 -23.81524 -23.40280 -22.87720 -21.51752 -21.17673 -18.60752 -17.29079 -16.39895 -16.31340 -16.03309 -15.43322 -15.17971 -15.12062 -14.40703 -14.22574 -13.91135 -13.62767 -13.28943 -12.56723 -12.23528 -12.13836 -11.88832 -11.69753 -11.56791 -11.45243 -11.32748 -11.10043 -10.81976 -10.56575 -10.45032 -10.15514 -10.01840 -9.53143 -8.83069 -8.51260 -8.35767 -7.54167 -7.16305 -5.96304 -4.00662 0.82944 1.32831 2.65997 2.71724 3.34716 3.40877 3.44596 3.46702 4.03577 4.31575 4.45928 4.52876 4.77942 4.85844 5.02304 5.12799 5.32594 5.36965 5.50252 5.56428 5.73023 5.76898 5.79028 5.91395 5.96725 6.16067 6.23001 6.33760 6.38868 6.43110 6.66789 6.82190 6.95281 7.23098 7.32615 7.58744 7.71587 8.02154 8.34012 8.62731 9.00484 9.30193 9.64518 11.11488 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.005496 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.496300 B = 5093.608418 C = 5931.295158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 N -0.589 5.589 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.580 3.420 14 O -0.553 6.553 15 C -0.213 4.213 16 C -0.124 4.124 17 C -0.071 4.071 18 N -0.341 5.341 19 C 0.040 3.960 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.067 4.067 23 C 0.096 3.904 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 -9.268 18.275 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.039 4.039 3 N -0.320 5.320 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.369 3.631 14 O -0.433 6.433 15 C -0.222 4.222 16 C -0.145 4.145 17 C -0.197 4.197 18 N -0.005 5.005 19 C -0.081 4.081 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.086 4.086 23 C -0.012 4.012 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.277 -8.646 18.293 20.273 hybrid contribution 0.898 -0.295 -0.484 1.062 sum -0.379 -8.941 17.809 19.931 Atomic orbital electron populations 1.22260 0.96996 1.01265 1.02609 1.21953 0.93440 0.84859 1.03604 1.47973 1.62775 1.13212 1.08024 1.19249 0.96704 0.93003 0.78322 1.21480 0.99275 1.29780 1.05738 0.92503 1.24924 0.97292 0.94998 0.96888 1.69938 1.34669 1.31787 1.17071 0.86522 0.84430 0.77559 0.79061 1.20688 1.21129 1.19945 1.16971 0.77645 0.86247 0.82271 1.90746 1.50583 1.15542 1.86415 1.19774 1.05142 1.01543 0.95780 1.21635 1.01429 0.96161 0.95309 1.21684 0.99740 1.00952 0.97293 1.41485 1.27347 1.20516 1.11157 1.21578 0.97225 1.02021 0.87273 1.20709 0.98983 0.95465 1.01122 1.21037 1.01181 0.99505 0.93654 1.20891 0.93169 0.96857 0.97659 1.18615 1.00564 0.92337 0.89719 0.91863 0.92217 0.92682 0.90708 0.89355 0.95076 0.93710 0.92816 0.81541 0.81309 0.82348 0.83884 0.84738 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.16 37.16 0.34 -2.17 16 2 C 0.09 1.50 5.63 -4.04 -0.02 1.47 16 3 N -0.59 -13.49 2.46 -176.77 -0.43 -13.92 16 4 C 0.25 6.73 5.23 -5.20 -0.03 6.71 16 5 C -0.52 -15.35 9.39 -34.44 -0.32 -15.68 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.58 13.54 7.58 -13.06 -0.10 13.44 16 14 O -0.55 -14.94 15.77 5.12 0.08 -14.86 16 15 C -0.21 -4.03 5.79 -104.46 -0.60 -4.63 16 16 C -0.12 -1.81 8.27 -39.56 -0.33 -2.14 16 17 C -0.07 -0.87 11.53 -16.58 -0.19 -1.06 16 18 N -0.34 -4.63 2.92 -60.81 -0.18 -4.81 16 19 C 0.04 0.40 10.89 -16.53 -0.18 0.22 16 20 C -0.14 -1.37 9.98 -39.96 -0.40 -1.77 16 21 C -0.13 -1.58 10.09 -39.49 -0.40 -1.98 16 22 C -0.07 -1.07 9.81 -39.50 -0.39 -1.46 16 23 C 0.10 1.65 6.69 -83.91 -0.56 1.09 16 24 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.78 7.34 -51.93 -0.38 0.40 16 27 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 28 H 0.09 1.37 4.04 -51.93 -0.21 1.16 16 29 H 0.03 0.85 8.01 -51.93 -0.42 0.44 16 30 H 0.04 1.38 7.34 -51.93 -0.38 0.99 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.17 2.10 4.17 -52.48 -0.22 1.88 16 33 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.15 2.67 7.49 -52.49 -0.39 2.28 16 LS Contribution 311.87 15.07 4.70 4.70 Total: -1.00 -35.71 311.87 -7.89 -43.60 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.50 Total: 0.70 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.28 Total: -6.28 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.12 Total: -45.18 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.08 Total: -14.86 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.71 -7.89 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896860834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.434 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds