Wall clock time and date at job start Mon Mar 30 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46492 * 120.00067 * 276.65218 * 3 2 1 5 5 C 1.50706 * 109.47494 * 270.00213 * 4 3 2 6 6 H 1.07998 * 119.99587 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00025 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47431 * 89.99565 * 9 7 5 11 11 H 1.48504 * 109.46877 * 209.99467 * 9 7 5 12 12 H 1.48500 * 109.47019 * 329.99486 * 9 7 5 13 13 C 1.34779 * 119.99525 * 96.65896 * 3 2 1 14 14 O 1.21774 * 119.99506 * 186.72627 * 13 3 2 15 15 C 1.46203 * 120.00108 * 6.72675 * 13 3 2 16 16 C 1.41740 * 126.80048 * 332.63044 * 15 13 3 17 17 C 1.34525 * 107.77775 * 179.83430 * 16 15 13 18 18 N 1.36953 * 109.59992 * 0.44562 * 17 16 15 19 19 C 1.36703 * 131.35184 * 179.65856 * 18 17 16 20 20 C 1.34995 * 120.75664 * 180.02562 * 19 18 17 21 21 C 1.40304 * 120.38027 * 0.04672 * 20 19 18 22 22 C 1.36333 * 119.45876 * 359.97242 * 21 20 19 23 23 C 1.36940 * 108.74187 * 359.71694 * 18 17 16 24 24 H 1.08997 * 109.47095 * 59.99760 * 1 2 3 25 25 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46610 * 299.99946 * 1 2 3 27 27 H 1.09005 * 109.47013 * 239.99938 * 2 1 3 28 28 H 1.08996 * 109.46910 * 120.00755 * 2 1 3 29 29 H 1.09002 * 109.47533 * 30.00744 * 4 3 2 30 30 H 1.09005 * 109.46853 * 150.00360 * 4 3 2 31 31 H 0.97001 * 120.00118 * 180.02562 * 8 7 5 32 32 H 1.08007 * 126.10925 * 359.97438 * 16 15 13 33 33 H 1.07996 * 125.19924 * 180.16576 * 17 16 15 34 34 H 1.08008 * 119.61938 * 0.06492 * 19 18 17 35 35 H 1.08007 * 119.81044 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.26929 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.34290 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1240 2.1208 -1.2601 5 6 3.4907 1.9040 -1.8569 6 1 4.2087 1.2776 -1.3485 7 6 3.8245 2.5054 -3.0519 8 7 2.9499 3.2678 -3.6711 9 14 5.5183 2.2361 -3.7919 10 1 5.4859 1.0492 -4.6838 11 1 5.9119 3.4341 -4.5763 12 1 6.5037 2.0110 -2.7040 13 6 2.3706 1.9714 1.1594 14 8 2.6591 3.1543 1.1773 15 6 2.4062 1.1913 2.3954 16 6 1.6374 0.0387 2.6945 17 6 1.9761 -0.3717 3.9301 18 7 2.9236 0.4695 4.4500 19 6 3.5655 0.4710 5.6569 20 6 4.4790 1.4202 5.9518 21 6 4.7845 2.4246 5.0210 22 6 4.1513 2.4349 3.8137 23 6 3.2055 1.4397 3.5255 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3634 1.7650 -1.9551 30 1 1.9745 3.1839 -1.0710 31 1 3.1846 3.6906 -4.5120 32 1 0.9113 -0.4281 2.0454 33 1 1.5608 -1.2304 4.4365 34 1 3.3396 -0.2964 6.3826 35 1 4.9773 1.4066 6.9100 36 1 5.5154 3.1833 5.2590 37 1 4.3752 3.2015 3.0867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896860834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:50 Heat of formation + Delta-G solvation = 33.798115 kcal Electronic energy + Delta-G solvation = -20634.092602 eV Core-core repulsion = 17570.281476 eV Total energy + Delta-G solvation = -3063.811126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.23679 -40.37772 -37.57222 -36.85516 -34.97218 -33.88995 -31.84441 -30.79608 -29.76046 -28.37736 -25.50395 -24.53560 -24.37795 -22.90566 -22.33928 -20.05458 -18.67863 -18.43587 -17.59618 -17.25079 -16.92624 -16.48025 -16.34792 -16.11153 -15.67003 -15.32226 -14.90498 -14.68219 -14.28010 -13.81090 -13.55858 -13.25890 -13.17860 -13.10385 -12.75078 -12.65277 -12.50127 -12.47992 -12.34402 -12.16124 -11.77413 -11.73209 -11.30891 -10.65477 -10.62007 -9.54895 -9.41800 -8.32239 -8.19450 -6.38839 -0.18488 0.30775 1.33423 1.37384 1.44554 1.48621 1.73274 2.27055 2.39509 2.53698 2.77047 3.05131 3.62736 3.87614 3.98788 4.01150 4.09661 4.18962 4.28796 4.43179 4.46191 4.67560 4.73107 4.85041 4.94624 4.97823 4.99381 5.05624 5.19279 5.27305 5.34345 5.40014 5.44228 5.58507 5.68454 5.88787 5.92555 6.07380 6.39948 6.69460 6.88105 7.27241 7.56514 8.84148 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.005496 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.496300 B = 5093.608418 C = 5931.295158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 N -0.598 5.598 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.048 0.952 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.275 1.275 13 C 0.570 3.430 14 O -0.615 6.615 15 C -0.275 4.275 16 C -0.130 4.130 17 C -0.050 4.050 18 N -0.341 5.341 19 C 0.054 3.946 20 C -0.148 4.148 21 C -0.096 4.096 22 C -0.134 4.134 23 C 0.086 3.914 24 H 0.039 0.961 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.023 0.977 30 H -0.006 1.006 31 H 0.268 0.732 32 H 0.183 0.817 33 H 0.225 0.775 34 H 0.215 0.785 35 H 0.193 0.807 36 H 0.159 0.841 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -12.807 21.855 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.042 4.042 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.202 1.202 12 H -0.200 1.200 13 C 0.362 3.638 14 O -0.500 6.500 15 C -0.285 4.285 16 C -0.150 4.150 17 C -0.174 4.174 18 N -0.005 5.005 19 C -0.066 4.066 20 C -0.167 4.167 21 C -0.117 4.117 22 C -0.154 4.154 23 C -0.024 4.024 24 H 0.058 0.942 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.041 0.959 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.200 0.800 33 H 0.241 0.759 34 H 0.232 0.768 35 H 0.210 0.790 36 H 0.176 0.824 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.474 -12.250 21.877 25.078 hybrid contribution 0.691 0.824 -1.356 1.731 sum 0.217 -11.426 20.521 23.489 Atomic orbital electron populations 1.22185 0.94407 1.03869 1.01610 1.22301 0.95524 0.81924 1.04432 1.47993 1.63249 1.15004 1.06488 1.18684 0.95933 0.90840 0.80325 1.21688 0.99902 1.30339 1.06421 0.93365 1.25892 1.01803 0.94273 0.97130 1.70063 1.36881 1.32279 1.17536 0.85373 0.78600 0.78375 0.78186 1.18465 1.20208 1.20034 1.17774 0.76197 0.86018 0.83810 1.90674 1.53400 1.18343 1.87550 1.19439 1.09719 1.04370 0.94940 1.21789 1.01428 0.94814 0.97016 1.22424 0.97802 1.00959 0.96177 1.41807 1.27532 1.19527 1.11608 1.22655 0.95248 1.02622 0.86118 1.21304 0.99039 0.94099 1.02248 1.21502 0.98741 0.99619 0.91837 1.20717 0.97019 0.98062 0.99563 1.18648 1.00261 0.93296 0.90193 0.94220 0.87628 0.92344 0.91654 0.86629 0.95947 0.98758 0.92301 0.79993 0.75871 0.76831 0.78964 0.82382 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 9.16 71.98 0.66 -4.05 16 2 C 0.08 2.90 5.63 86.38 0.49 3.38 16 3 N -0.60 -29.67 2.46 -831.35 -2.04 -31.72 16 4 C 0.26 15.76 5.23 85.64 0.45 16.20 16 5 C -0.54 -34.04 9.39 25.60 0.24 -33.80 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -58.89 13.29 21.45 0.28 -58.61 16 9 Si 0.97 47.18 29.54 68.60 2.03 49.21 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.57 29.20 7.58 86.31 0.65 29.86 16 14 O -0.61 -37.38 15.77 -4.59 -0.07 -37.45 16 15 C -0.28 -10.92 5.79 -19.76 -0.11 -11.04 16 16 C -0.13 -3.61 8.27 22.28 0.18 -3.42 16 17 C -0.05 -1.01 11.53 83.04 0.96 -0.05 16 18 N -0.34 -8.11 2.92 -346.29 -1.01 -9.12 16 19 C 0.05 0.77 10.89 83.19 0.91 1.68 16 20 C -0.15 -2.07 9.98 22.03 0.22 -1.85 16 21 C -0.10 -2.11 10.09 22.33 0.23 -1.89 16 22 C -0.13 -4.55 9.81 22.32 0.22 -4.34 16 23 C 0.09 3.02 6.69 39.43 0.26 3.28 16 24 H 0.04 1.32 8.08 -2.39 -0.02 1.30 16 25 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.06 1.65 7.34 -2.39 -0.02 1.63 16 27 H 0.06 2.45 8.12 -2.38 -0.02 2.43 16 28 H 0.12 3.56 4.04 -2.39 -0.01 3.55 16 29 H 0.02 1.35 8.01 -2.39 -0.02 1.33 16 30 H -0.01 -0.39 7.34 -2.38 -0.02 -0.41 16 31 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.18 4.20 4.17 -2.91 -0.01 4.19 16 33 H 0.22 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.19 0.89 8.06 -2.91 -0.02 0.86 16 36 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.11 4.57 7.49 -2.91 -0.02 4.55 16 Total: -1.00 -89.96 311.87 6.07 -83.89 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.08 Total: 8.88 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.81 Total: -5.08 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -2.77 Total: -99.45 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.07 Total: -37.45 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -89.96 6.07 -83.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896860834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.688 kcal (2) G-P(sol) polarization free energy of solvation -89.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds