Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50701 * 109.47089 * 240.00187 * 2 1 3 5 5 H 1.07995 * 119.99918 * 239.99804 * 4 2 1 6 6 C 1.37881 * 120.00205 * 59.99738 * 4 2 1 7 7 N 1.31514 * 119.99643 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00125 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47109 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47105 * 120.00099 * 8 6 4 11 11 H 1.48496 * 109.47489 * 240.00356 * 8 6 4 12 12 N 1.46499 * 109.47022 * 120.00281 * 2 1 3 13 13 C 1.46499 * 120.00397 * 60.00073 * 12 2 1 14 14 C 1.34782 * 119.99710 * 239.99785 * 12 2 1 15 15 O 1.21771 * 120.00007 * 4.57772 * 14 12 2 16 16 C 1.46205 * 120.00057 * 184.57306 * 14 12 2 17 17 C 1.41740 * 126.79745 * 324.98424 * 16 14 12 18 18 C 1.34516 * 107.77672 * 179.88759 * 17 16 14 19 19 N 1.36959 * 109.60109 * 0.38148 * 18 17 16 20 20 C 1.36702 * 131.34537 * 179.78286 * 19 18 17 21 21 C 1.35007 * 120.75145 * 179.97438 * 20 19 18 22 22 C 1.40307 * 120.38048 * 359.97438 * 21 20 19 23 23 C 1.36341 * 119.45649 * 0.06252 * 22 21 20 24 24 C 1.36935 * 108.74301 * 359.75403 * 19 18 17 25 25 H 1.08993 * 109.46995 * 299.99795 * 1 2 3 26 26 H 1.08995 * 109.47184 * 60.00006 * 1 2 3 27 27 H 1.08996 * 109.46705 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99868 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47104 * 269.72625 * 13 12 2 30 30 H 1.08992 * 109.47105 * 149.72257 * 13 12 2 31 31 H 1.09006 * 109.47135 * 29.72355 * 13 12 2 32 32 H 1.08003 * 126.11426 * 0.02562 * 17 16 14 33 33 H 1.08005 * 125.20231 * 180.14243 * 18 17 16 34 34 H 1.07998 * 119.62563 * 359.95496 * 20 19 18 35 35 H 1.08002 * 119.81158 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.26801 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.33897 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0189 1.1517 1.9346 16 6 3.3629 -0.7507 3.2243 17 6 2.7583 -1.8054 3.9531 18 6 3.6160 -2.1820 4.9184 19 7 4.7472 -1.4125 4.8538 20 6 5.8842 -1.4129 5.6127 21 6 6.8858 -0.5448 5.3559 22 6 6.7753 0.3745 4.3017 23 6 5.6461 0.3859 3.5376 24 6 4.6165 -0.5242 3.8199 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 -0.0005 28 1 0.7089 1.1614 -3.4844 29 1 0.7402 -2.1444 2.0035 30 1 2.4651 -2.5831 1.9820 31 1 1.5248 -2.5957 0.4708 32 1 1.7841 -2.2322 3.7653 33 1 3.4382 -2.9682 5.6373 34 1 5.9823 -2.1154 6.4271 35 1 7.7776 -0.5587 5.9648 36 1 7.5774 1.0684 4.0982 37 1 5.5458 1.0877 2.7229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896885001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = 51.043509 kcal Electronic energy + Delta-G solvation = -20613.926167 eV Core-core repulsion = 17550.862857 eV Total energy + Delta-G solvation = -3063.063310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16053 -38.65905 -36.48408 -35.12990 -33.06866 -32.53606 -30.17085 -29.22840 -27.65775 -26.00053 -25.14385 -23.68980 -23.09278 -21.30341 -20.46376 -18.52763 -17.29185 -16.40305 -16.28837 -15.85222 -15.57947 -15.22632 -14.96919 -14.36301 -14.28182 -13.93101 -13.29238 -12.95292 -12.61558 -12.29928 -12.17711 -11.67943 -11.60688 -11.55173 -11.37492 -11.11023 -10.95953 -10.77631 -10.60675 -10.22750 -10.14881 -10.08284 -9.09659 -8.87133 -8.54827 -8.35699 -7.48795 -7.16605 -6.00601 -4.07956 0.81791 1.32156 2.68082 2.70974 3.29940 3.37637 3.40942 3.43624 3.97621 4.29780 4.43492 4.49717 4.77184 4.83916 5.01830 5.12916 5.30215 5.32783 5.57083 5.73750 5.83064 5.90280 6.00296 6.16744 6.21510 6.31849 6.41261 6.52171 6.80014 6.86889 6.93095 6.97856 7.17548 7.29451 7.58505 7.66275 7.81263 8.12536 8.29241 8.69497 8.92672 9.25261 9.58759 11.04709 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026087 B = 0.004843 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.063887 B = 5780.489440 C = 6093.544246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.586 5.586 13 C 0.080 3.920 14 C 0.577 3.423 15 O -0.561 6.561 16 C -0.212 4.212 17 C -0.111 4.111 18 C -0.070 4.070 19 N -0.341 5.341 20 C 0.042 3.958 21 C -0.144 4.144 22 C -0.132 4.132 23 C -0.068 4.068 24 C 0.094 3.906 25 H 0.011 0.989 26 H 0.092 0.908 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -7.211 16.201 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.316 5.316 13 C -0.064 4.064 14 C 0.366 3.634 15 O -0.442 6.442 16 C -0.222 4.222 17 C -0.133 4.133 18 C -0.196 4.196 19 N -0.006 5.006 20 C -0.079 4.079 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.087 4.087 24 C -0.014 4.014 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.174 0.826 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.091 -6.591 16.134 19.215 hybrid contribution 0.256 -0.677 -0.781 1.065 sum 8.347 -7.269 15.353 18.926 Atomic orbital electron populations 1.22070 0.98263 0.99320 1.00740 1.18930 0.90885 0.94542 0.79853 0.91890 1.21386 1.31523 1.12916 0.90309 0.92208 1.24891 0.95028 0.95008 0.98902 1.69901 1.36554 1.22662 1.23519 0.86455 0.78576 0.79596 0.82849 1.19846 1.20980 1.20958 1.48021 1.48879 1.11536 1.23117 1.21840 0.98731 0.83655 1.02158 1.17068 0.78893 0.86156 0.81324 1.90741 1.61951 1.15154 1.76356 1.19726 0.95589 1.03990 1.02853 1.21265 0.99952 0.96739 0.95336 1.21631 0.87190 1.03705 1.07078 1.41463 1.12632 1.24725 1.21748 1.21581 0.86155 1.02403 0.97793 1.20706 0.98848 0.96836 0.99997 1.21028 0.98327 0.99902 0.96019 1.20832 0.90983 0.96861 1.00041 1.18596 0.96751 0.94672 0.91400 0.96984 0.88934 0.95231 0.92825 0.94147 0.91808 0.90588 0.82611 0.81293 0.82338 0.83874 0.84739 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.97 37.16 0.33 -3.29 16 2 C 0.26 6.89 2.63 -69.08 -0.18 6.70 16 3 H 0.06 1.94 6.91 -51.93 -0.36 1.58 16 4 C -0.52 -14.53 7.98 -34.44 -0.27 -14.80 16 5 H 0.06 1.65 7.34 -52.49 -0.39 1.26 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.59 -13.47 2.75 -176.97 -0.49 -13.95 16 13 C 0.08 1.46 8.03 59.85 0.48 1.94 16 14 C 0.58 13.34 7.55 -13.06 -0.10 13.24 16 15 O -0.56 -14.89 15.95 5.13 0.08 -14.81 16 16 C -0.21 -3.98 5.50 -104.46 -0.57 -4.55 16 17 C -0.11 -1.63 8.38 -39.56 -0.33 -1.96 16 18 C -0.07 -0.87 11.53 -16.58 -0.19 -1.06 16 19 N -0.34 -4.60 2.92 -60.81 -0.18 -4.78 16 20 C 0.04 0.42 10.89 -16.53 -0.18 0.24 16 21 C -0.14 -1.36 9.98 -39.95 -0.40 -1.76 16 22 C -0.13 -1.53 10.09 -39.49 -0.40 -1.93 16 23 C -0.07 -1.06 9.90 -39.50 -0.39 -1.45 16 24 C 0.09 1.59 6.69 -83.92 -0.56 1.03 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 0.64 7.60 -51.93 -0.39 0.25 16 30 H 0.06 1.03 5.34 -51.93 -0.28 0.75 16 31 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 32 H 0.16 1.98 6.26 -52.48 -0.33 1.65 16 33 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 34 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.15 2.53 7.76 -52.49 -0.41 2.12 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -33.93 307.90 -7.68 -41.61 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.48 Total: 1.85 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.86 Total: -5.97 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.04 Total: -43.71 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.08 Total: -14.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.93 -7.68 -41.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896885001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.654 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds