Wall clock time and date at job start Mon Mar 30 2020 01:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50701 * 109.47089 * 240.00187 * 2 1 3 5 5 H 1.07995 * 119.99918 * 239.99804 * 4 2 1 6 6 C 1.37881 * 120.00205 * 59.99738 * 4 2 1 7 7 N 1.31514 * 119.99643 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00125 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47109 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47105 * 120.00099 * 8 6 4 11 11 H 1.48496 * 109.47489 * 240.00356 * 8 6 4 12 12 N 1.46499 * 109.47022 * 120.00281 * 2 1 3 13 13 C 1.46499 * 120.00397 * 60.00073 * 12 2 1 14 14 C 1.34782 * 119.99710 * 239.99785 * 12 2 1 15 15 O 1.21771 * 120.00007 * 4.57772 * 14 12 2 16 16 C 1.46205 * 120.00057 * 184.57306 * 14 12 2 17 17 C 1.41740 * 126.79745 * 324.98424 * 16 14 12 18 18 C 1.34516 * 107.77672 * 179.88759 * 17 16 14 19 19 N 1.36959 * 109.60109 * 0.38148 * 18 17 16 20 20 C 1.36702 * 131.34537 * 179.78286 * 19 18 17 21 21 C 1.35007 * 120.75145 * 179.97438 * 20 19 18 22 22 C 1.40307 * 120.38048 * 359.97438 * 21 20 19 23 23 C 1.36341 * 119.45649 * 0.06252 * 22 21 20 24 24 C 1.36935 * 108.74301 * 359.75403 * 19 18 17 25 25 H 1.08993 * 109.46995 * 299.99795 * 1 2 3 26 26 H 1.08995 * 109.47184 * 60.00006 * 1 2 3 27 27 H 1.08996 * 109.46705 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99868 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47104 * 269.72625 * 13 12 2 30 30 H 1.08992 * 109.47105 * 149.72257 * 13 12 2 31 31 H 1.09006 * 109.47135 * 29.72355 * 13 12 2 32 32 H 1.08003 * 126.11426 * 0.02562 * 17 16 14 33 33 H 1.08005 * 125.20231 * 180.14243 * 18 17 16 34 34 H 1.07998 * 119.62563 * 359.95496 * 20 19 18 35 35 H 1.08002 * 119.81158 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.26801 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.33897 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0189 1.1517 1.9346 16 6 3.3629 -0.7507 3.2243 17 6 2.7583 -1.8054 3.9531 18 6 3.6160 -2.1820 4.9184 19 7 4.7472 -1.4125 4.8538 20 6 5.8842 -1.4129 5.6127 21 6 6.8858 -0.5448 5.3559 22 6 6.7753 0.3745 4.3017 23 6 5.6461 0.3859 3.5376 24 6 4.6165 -0.5242 3.8199 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 -0.0005 28 1 0.7089 1.1614 -3.4844 29 1 0.7402 -2.1444 2.0035 30 1 2.4651 -2.5831 1.9820 31 1 1.5248 -2.5957 0.4708 32 1 1.7841 -2.2322 3.7653 33 1 3.4382 -2.9682 5.6373 34 1 5.9823 -2.1154 6.4271 35 1 7.7776 -0.5587 5.9648 36 1 7.5774 1.0684 4.0982 37 1 5.5458 1.0877 2.7229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896885001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:59 Heat of formation + Delta-G solvation = 29.755545 kcal Electronic energy + Delta-G solvation = -20614.849282 eV Core-core repulsion = 17550.862857 eV Total energy + Delta-G solvation = -3063.986425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.20278 -40.37485 -37.49275 -37.04583 -34.82189 -33.88988 -31.64880 -30.67067 -28.84105 -27.58259 -27.30870 -24.83954 -24.36919 -22.34932 -22.13147 -20.03834 -18.62179 -18.32723 -17.51336 -17.24528 -16.93757 -16.47650 -16.36113 -15.89532 -15.77822 -15.17795 -14.79190 -14.43908 -14.09430 -13.88052 -13.59875 -13.45730 -13.01613 -12.84046 -12.77840 -12.70330 -12.52287 -12.50024 -12.23054 -12.13670 -12.10195 -11.33863 -11.18910 -10.70719 -10.49248 -9.55780 -9.30724 -8.27999 -8.14144 -6.31534 -0.17181 0.31877 1.39836 1.41254 1.47531 1.53726 1.73862 2.26291 2.40364 2.56804 2.75929 3.12672 3.63062 3.88160 3.99634 4.03121 4.12659 4.28476 4.46189 4.54476 4.71084 4.76029 4.82240 4.88722 4.91070 4.97225 5.03390 5.08284 5.23009 5.35030 5.41483 5.47958 5.60531 5.68834 5.73600 5.90358 6.07831 6.16934 6.40661 6.76352 6.90931 7.33477 7.55464 8.90392 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026087 B = 0.004843 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.063887 B = 5780.489440 C = 6093.544246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.271 1.271 11 H -0.284 1.284 12 N -0.595 5.595 13 C 0.082 3.918 14 C 0.568 3.432 15 O -0.619 6.619 16 C -0.274 4.274 17 C -0.118 4.118 18 C -0.051 4.051 19 N -0.342 5.342 20 C 0.053 3.947 21 C -0.148 4.148 22 C -0.096 4.096 23 C -0.134 4.134 24 C 0.085 3.915 25 H 0.016 0.984 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.171 0.829 33 H 0.222 0.778 34 H 0.214 0.786 35 H 0.193 0.807 36 H 0.159 0.841 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -10.614 19.100 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.196 1.196 11 H -0.210 1.210 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.359 3.641 15 O -0.505 6.505 16 C -0.283 4.283 17 C -0.139 4.139 18 C -0.175 4.175 19 N -0.006 5.006 20 C -0.067 4.067 21 C -0.167 4.167 22 C -0.117 4.117 23 C -0.153 4.153 24 C -0.025 4.025 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.239 0.761 34 H 0.230 0.770 35 H 0.210 0.790 36 H 0.177 0.823 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.948 -10.049 19.057 23.730 hybrid contribution -0.135 0.428 -1.502 1.567 sum 9.813 -9.621 17.556 22.295 Atomic orbital electron populations 1.21849 0.97025 1.00120 0.99801 1.18547 0.91778 0.92080 0.81644 0.97723 1.21580 1.31883 1.13003 0.91155 0.92381 1.25775 0.95038 0.95665 1.02051 1.70045 1.37345 1.23893 1.24402 0.85350 0.78284 0.78398 0.78628 1.19061 1.19615 1.20975 1.48017 1.49124 1.13257 1.22013 1.22038 1.00828 0.80875 1.02310 1.17838 0.78084 0.85799 0.82345 1.90674 1.63849 1.17823 1.78116 1.19411 0.97975 1.07287 1.03651 1.21459 1.01092 0.95740 0.95631 1.22335 0.85547 1.03258 1.06365 1.41783 1.14063 1.23815 1.20909 1.22637 0.84252 1.02411 0.97362 1.21299 1.00591 0.95528 0.99328 1.21499 0.96597 0.99163 0.94434 1.20686 0.93689 0.98825 1.02119 1.18641 0.96307 0.95357 0.92238 0.96448 0.91242 0.93319 0.92576 0.91483 0.89430 0.91623 0.81136 0.76110 0.76984 0.79024 0.82315 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 8.97 71.98 0.65 -6.11 16 2 C 0.26 14.93 2.63 44.25 0.12 15.05 16 3 H 0.00 0.32 6.91 -2.39 -0.02 0.31 16 4 C -0.54 -31.24 7.98 25.60 0.20 -31.03 16 5 H 0.06 3.31 7.34 -2.91 -0.02 3.29 16 6 C 0.01 0.81 5.30 84.66 0.45 1.25 16 7 N -0.92 -55.14 11.32 21.45 0.24 -54.90 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 N -0.60 -29.03 2.75 -831.99 -2.29 -31.32 16 13 C 0.08 3.00 8.03 127.77 1.03 4.02 16 14 C 0.57 28.48 7.55 86.31 0.65 29.13 16 15 O -0.62 -36.70 15.95 -4.58 -0.07 -36.77 16 16 C -0.27 -10.70 5.50 -19.76 -0.11 -10.81 16 17 C -0.12 -3.30 8.38 22.28 0.19 -3.11 16 18 C -0.05 -1.04 11.53 83.04 0.96 -0.09 16 19 N -0.34 -8.09 2.92 -346.29 -1.01 -9.10 16 20 C 0.05 0.77 10.89 83.19 0.91 1.67 16 21 C -0.15 -2.04 9.98 22.03 0.22 -1.82 16 22 C -0.10 -2.05 10.09 22.33 0.23 -1.82 16 23 C -0.13 -4.41 9.90 22.32 0.22 -4.18 16 24 C 0.08 2.91 6.69 39.43 0.26 3.17 16 25 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 27 H 0.05 2.29 7.67 -2.39 -0.02 2.27 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.07 2.07 7.60 -2.39 -0.02 2.05 16 30 H 0.09 2.78 5.34 -2.39 -0.01 2.77 16 31 H 0.06 2.52 7.02 -2.38 -0.02 2.50 16 32 H 0.17 3.99 6.26 -2.91 -0.02 3.97 16 33 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 37 H 0.11 4.40 7.76 -2.91 -0.02 4.38 16 Total: -1.00 -84.07 307.90 5.94 -78.13 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.08 Total: 11.84 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 5.97 Total: -4.68 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.06 Total: -95.32 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.07 Total: -36.77 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -84.07 5.94 -78.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896885001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.890 kcal (2) G-P(sol) polarization free energy of solvation -84.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds