Wall clock time and date at job start Mon Mar 30 2020 01:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46935 * 2 1 4 4 C 1.50700 * 109.47204 * 120.00010 * 2 1 3 5 5 H 1.07995 * 120.00056 * 120.00106 * 4 2 1 6 6 C 1.37879 * 119.99828 * 300.00309 * 4 2 1 7 7 N 1.31512 * 119.99484 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00305 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47191 * 89.99959 * 8 6 4 10 10 H 1.48499 * 109.47389 * 210.00217 * 8 6 4 11 11 H 1.48508 * 109.46972 * 330.00292 * 8 6 4 12 12 N 1.46500 * 109.47053 * 240.00711 * 2 1 3 13 13 C 1.46502 * 119.99549 * 299.99154 * 12 2 1 14 14 C 1.34773 * 120.00260 * 120.00119 * 12 2 1 15 15 O 1.21775 * 120.00254 * 4.52929 * 14 12 2 16 16 C 1.46207 * 119.99979 * 184.52903 * 14 12 2 17 17 C 1.41746 * 126.80021 * 323.19107 * 16 14 12 18 18 C 1.34517 * 107.77609 * 179.97438 * 17 16 14 19 19 N 1.36949 * 109.60480 * 0.02562 * 18 17 16 20 20 C 1.36703 * 131.35173 * 180.02562 * 19 18 17 21 21 C 1.35001 * 120.75669 * 179.97438 * 20 19 18 22 22 C 1.40305 * 120.38179 * 359.97438 * 21 20 19 23 23 C 1.36338 * 119.45417 * 359.78525 * 22 21 20 24 24 C 1.36944 * 108.74111 * 359.97438 * 19 18 17 25 25 H 1.09005 * 109.46966 * 59.99910 * 1 2 3 26 26 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47214 * 299.99634 * 1 2 3 28 28 H 0.96997 * 119.99763 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47471 * 264.79478 * 13 12 2 30 30 H 1.08999 * 109.47291 * 24.79691 * 13 12 2 31 31 H 1.09007 * 109.46749 * 144.79847 * 13 12 2 32 32 H 1.08000 * 126.11047 * 359.96676 * 17 16 14 33 33 H 1.08001 * 125.19560 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.62409 * 359.93128 * 20 19 18 35 35 H 1.08007 * 119.80940 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.26996 * 180.02562 * 22 21 20 37 37 H 1.08005 * 120.34072 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0354 -2.0833 15 8 3.1556 1.1036 -1.8508 16 6 3.1987 -0.6924 -3.3250 17 6 3.5327 -2.0598 -3.4922 18 6 3.8467 -2.2505 -4.7862 19 7 3.7318 -1.0673 -5.4662 20 6 3.9406 -0.7574 -6.7811 21 6 3.7600 0.5028 -7.2305 22 6 3.3530 1.5180 -6.3517 23 6 3.1366 1.2213 -5.0387 24 6 3.3342 -0.0930 -4.5898 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.9040 -0.5275 4.4374 29 1 2.4612 -2.7356 -1.0534 30 1 0.7357 -2.3245 -0.9067 31 1 1.5333 -2.2628 -2.4968 32 1 3.5348 -2.8137 -2.7188 33 1 4.1448 -3.1927 -5.2221 34 1 4.2543 -1.5293 -7.4683 35 1 3.9289 0.7306 -8.2727 36 1 3.2087 2.5254 -6.7132 37 1 2.8235 1.9918 -4.3497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896885006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:03 Heat of formation + Delta-G solvation = 59.341414 kcal Electronic energy + Delta-G solvation = -20649.321901 eV Core-core repulsion = 17586.618415 eV Total energy + Delta-G solvation = -3062.703486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22568 -38.83413 -36.55983 -35.34180 -33.11234 -32.50750 -30.60688 -29.72204 -27.83293 -26.17334 -25.05060 -23.78039 -23.24649 -21.36862 -20.55498 -18.56242 -17.42611 -16.72101 -16.37837 -15.88316 -15.68688 -15.41713 -15.12133 -14.59552 -14.31415 -13.99561 -13.31758 -13.10981 -12.77298 -12.55980 -12.23298 -12.16397 -11.71584 -11.71359 -11.65521 -11.51740 -11.22418 -11.05531 -10.59399 -10.30894 -10.06903 -9.58837 -9.26165 -8.98895 -8.61216 -8.56929 -7.63092 -7.25587 -6.07827 -4.07461 0.74285 1.25053 2.62309 2.64316 3.28277 3.34803 3.41704 3.45135 3.87869 4.09024 4.39761 4.41533 4.71638 4.75707 4.94363 5.06227 5.23872 5.27385 5.48102 5.67897 5.76211 5.84491 5.89317 6.12294 6.14502 6.23852 6.29003 6.33539 6.35256 6.42190 6.57882 6.76158 6.87307 6.91992 7.20426 7.27456 7.48551 7.72603 8.33151 8.57685 8.93808 9.09616 9.53942 11.05164 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.004839 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.454207 B = 5785.482501 C = 6247.040300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.263 1.263 12 N -0.581 5.581 13 C 0.087 3.913 14 C 0.581 3.419 15 O -0.559 6.559 16 C -0.214 4.214 17 C -0.107 4.107 18 C -0.069 4.069 19 N -0.341 5.341 20 C 0.045 3.955 21 C -0.145 4.145 22 C -0.130 4.130 23 C -0.072 4.072 24 C 0.094 3.906 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.265 0.735 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -2.096 -22.018 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.311 5.311 13 C -0.057 4.057 14 C 0.369 3.631 15 O -0.440 6.440 16 C -0.223 4.223 17 C -0.129 4.129 18 C -0.194 4.194 19 N -0.006 5.006 20 C -0.076 4.076 21 C -0.166 4.166 22 C -0.150 4.150 23 C -0.091 4.091 24 C -0.015 4.015 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.176 0.824 33 H 0.188 0.812 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.869 -1.611 -21.885 21.961 hybrid contribution -0.530 0.489 0.258 0.766 sum 0.339 -1.123 -21.626 21.658 Atomic orbital electron populations 1.22464 0.99191 1.01055 0.99174 1.19279 0.89812 0.95258 0.82899 0.91963 1.21183 1.32396 1.14113 0.88476 0.90360 1.24866 0.95740 0.96558 0.95635 1.69878 1.45416 1.40284 0.97914 0.86918 0.80380 0.83967 0.77431 1.20458 1.22207 1.18788 1.47657 1.48979 1.11809 1.22640 1.21771 1.01170 0.82694 1.00026 1.17054 0.78434 0.85371 0.82222 1.90747 1.56256 1.19011 1.77958 1.19620 1.15788 0.94267 0.92655 1.21296 1.00655 0.95492 0.95443 1.21659 1.16346 0.88829 0.92586 1.41470 1.43040 1.09368 1.06691 1.21605 1.03679 0.98716 0.83640 1.20706 1.03187 0.91680 1.00984 1.21025 1.01153 0.99840 0.93020 1.20783 0.98112 0.93908 0.96277 1.18573 1.04258 0.89283 0.89342 0.94837 0.92531 0.93188 0.92536 0.93143 0.90991 0.92147 0.82449 0.81174 0.82257 0.83830 0.84750 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.66 37.16 0.32 -3.26 16 2 C 0.23 5.77 2.22 -69.08 -0.15 5.62 16 3 H 0.06 1.73 5.96 -51.93 -0.31 1.42 16 4 C -0.52 -14.90 8.95 -34.44 -0.31 -15.21 16 5 H 0.08 2.39 7.89 -52.49 -0.41 1.98 16 6 C 0.07 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 8 Si 0.88 22.31 24.37 -169.99 -4.14 18.17 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 12 N -0.58 -12.81 2.75 -176.97 -0.49 -13.30 16 13 C 0.09 1.53 8.23 59.85 0.49 2.02 16 14 C 0.58 12.87 7.54 -13.06 -0.10 12.78 16 15 O -0.56 -14.27 16.11 5.12 0.08 -14.18 16 16 C -0.21 -3.85 5.43 -104.46 -0.57 -4.42 16 17 C -0.11 -1.55 8.48 -39.56 -0.34 -1.88 16 18 C -0.07 -0.82 11.53 -16.58 -0.19 -1.01 16 19 N -0.34 -4.37 2.92 -60.81 -0.18 -4.54 16 20 C 0.04 0.42 10.89 -16.53 -0.18 0.24 16 21 C -0.15 -1.26 9.98 -39.95 -0.40 -1.66 16 22 C -0.13 -1.37 10.09 -39.49 -0.40 -1.77 16 23 C -0.07 -1.03 9.95 -39.50 -0.39 -1.42 16 24 C 0.09 1.49 6.70 -83.91 -0.56 0.93 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.17 6.66 -51.93 -0.35 0.82 16 27 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.05 0.86 7.32 -51.93 -0.38 0.48 16 30 H 0.07 1.25 6.44 -51.93 -0.33 0.92 16 31 H 0.06 0.90 5.86 -51.93 -0.30 0.59 16 32 H 0.16 2.05 6.29 -52.49 -0.33 1.72 16 33 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.15 2.26 7.86 -52.48 -0.41 1.84 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -35.35 300.94 -6.58 -41.93 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.30 Total: 1.10 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.87 Total: -6.97 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.11 Total: -44.57 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.08 Total: -14.18 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.35 -6.58 -41.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896885006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.276 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds