Wall clock time and date at job start Mon Mar 30 2020 01:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46935 * 2 1 4 4 C 1.50700 * 109.47204 * 120.00010 * 2 1 3 5 5 H 1.07995 * 120.00056 * 120.00106 * 4 2 1 6 6 C 1.37879 * 119.99828 * 300.00309 * 4 2 1 7 7 N 1.31512 * 119.99484 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00305 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47191 * 89.99959 * 8 6 4 10 10 H 1.48499 * 109.47389 * 210.00217 * 8 6 4 11 11 H 1.48508 * 109.46972 * 330.00292 * 8 6 4 12 12 N 1.46500 * 109.47053 * 240.00711 * 2 1 3 13 13 C 1.46502 * 119.99549 * 299.99154 * 12 2 1 14 14 C 1.34773 * 120.00260 * 120.00119 * 12 2 1 15 15 O 1.21775 * 120.00254 * 4.52929 * 14 12 2 16 16 C 1.46207 * 119.99979 * 184.52903 * 14 12 2 17 17 C 1.41746 * 126.80021 * 323.19107 * 16 14 12 18 18 C 1.34517 * 107.77609 * 179.97438 * 17 16 14 19 19 N 1.36949 * 109.60480 * 0.02562 * 18 17 16 20 20 C 1.36703 * 131.35173 * 180.02562 * 19 18 17 21 21 C 1.35001 * 120.75669 * 179.97438 * 20 19 18 22 22 C 1.40305 * 120.38179 * 359.97438 * 21 20 19 23 23 C 1.36338 * 119.45417 * 359.78525 * 22 21 20 24 24 C 1.36944 * 108.74111 * 359.97438 * 19 18 17 25 25 H 1.09005 * 109.46966 * 59.99910 * 1 2 3 26 26 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47214 * 299.99634 * 1 2 3 28 28 H 0.96997 * 119.99763 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47471 * 264.79478 * 13 12 2 30 30 H 1.08999 * 109.47291 * 24.79691 * 13 12 2 31 31 H 1.09007 * 109.46749 * 144.79847 * 13 12 2 32 32 H 1.08000 * 126.11047 * 359.96676 * 17 16 14 33 33 H 1.08001 * 125.19560 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.62409 * 359.93128 * 20 19 18 35 35 H 1.08007 * 119.80940 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.26996 * 180.02562 * 22 21 20 37 37 H 1.08005 * 120.34072 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0354 -2.0833 15 8 3.1556 1.1036 -1.8508 16 6 3.1987 -0.6924 -3.3250 17 6 3.5327 -2.0598 -3.4922 18 6 3.8467 -2.2505 -4.7862 19 7 3.7318 -1.0673 -5.4662 20 6 3.9406 -0.7574 -6.7811 21 6 3.7600 0.5028 -7.2305 22 6 3.3530 1.5180 -6.3517 23 6 3.1366 1.2213 -5.0387 24 6 3.3342 -0.0930 -4.5898 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.9040 -0.5275 4.4374 29 1 2.4612 -2.7356 -1.0534 30 1 0.7357 -2.3245 -0.9067 31 1 1.5333 -2.2628 -2.4968 32 1 3.5348 -2.8137 -2.7188 33 1 4.1448 -3.1927 -5.2221 34 1 4.2543 -1.5293 -7.4683 35 1 3.9289 0.7306 -8.2727 36 1 3.2087 2.5254 -6.7132 37 1 2.8235 1.9918 -4.3497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896885006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:02 Heat of formation + Delta-G solvation = 35.521846 kcal Electronic energy + Delta-G solvation = -20650.354795 eV Core-core repulsion = 17586.618415 eV Total energy + Delta-G solvation = -3063.736380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.21542 -40.48414 -37.49819 -37.18056 -34.79922 -33.94381 -32.33502 -30.80370 -28.91587 -27.71801 -27.14486 -24.92310 -24.40650 -22.37657 -22.12617 -20.03884 -18.95167 -18.44174 -17.63253 -17.20807 -17.04481 -16.66375 -16.35310 -16.05095 -15.66937 -15.20338 -14.94257 -14.76486 -14.18262 -14.12169 -13.88844 -13.58591 -13.41548 -13.02817 -13.00478 -12.78176 -12.50811 -12.47761 -12.17560 -12.05687 -11.60100 -11.39070 -11.31389 -10.79908 -10.72084 -9.58285 -9.38925 -8.35364 -8.28888 -6.39475 -0.17318 0.31119 1.24782 1.34659 1.43941 1.44247 1.71940 2.26375 2.27866 2.43624 2.66937 2.99713 3.61966 3.86542 3.97634 4.00714 4.11237 4.28328 4.38072 4.43688 4.51627 4.59307 4.61132 4.72961 4.79588 4.88677 4.94951 4.97197 5.06599 5.22056 5.32654 5.36255 5.41284 5.49915 5.67134 5.78698 5.89713 6.22718 6.38796 6.61268 6.79298 7.22501 7.44770 8.81152 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.004839 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.454207 B = 5785.482501 C = 6247.040300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.231 3.769 3 H 0.028 0.972 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.939 5.939 8 Si 0.942 3.058 9 H -0.250 1.250 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.591 5.591 13 C 0.090 3.910 14 C 0.573 3.427 15 O -0.613 6.613 16 C -0.275 4.275 17 C -0.120 4.120 18 C -0.051 4.051 19 N -0.342 5.342 20 C 0.053 3.947 21 C -0.148 4.148 22 C -0.094 4.094 23 C -0.132 4.132 24 C 0.089 3.911 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.269 0.731 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.219 0.781 34 H 0.211 0.789 35 H 0.192 0.808 36 H 0.162 0.838 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -2.909 -26.441 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.128 3.872 3 H 0.046 0.954 4 C -0.564 4.564 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.769 3.231 9 H -0.175 1.175 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.320 5.320 13 C -0.052 4.052 14 C 0.365 3.635 15 O -0.497 6.497 16 C -0.284 4.284 17 C -0.141 4.141 18 C -0.175 4.175 19 N -0.005 5.005 20 C -0.067 4.067 21 C -0.167 4.167 22 C -0.115 4.115 23 C -0.151 4.151 24 C -0.021 4.021 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.180 0.820 33 H 0.236 0.764 34 H 0.228 0.772 35 H 0.209 0.791 36 H 0.179 0.821 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.394 -2.483 -26.328 26.448 hybrid contribution -0.237 0.744 1.369 1.576 sum 0.157 -1.739 -24.959 25.020 Atomic orbital electron populations 1.22305 0.96430 1.02363 0.99868 1.18974 0.91872 0.93321 0.83060 0.95448 1.21355 1.31728 1.13075 0.90264 0.93911 1.25652 0.97186 0.99534 0.95195 1.70002 1.47135 1.42191 0.98561 0.85960 0.80004 0.80071 0.77061 1.17475 1.22016 1.19054 1.47731 1.49174 1.13379 1.21730 1.21923 1.00989 0.80251 1.02075 1.17774 0.77415 0.84880 0.83418 1.90680 1.58324 1.21471 1.79260 1.19314 1.21013 0.96297 0.91787 1.21406 1.01477 0.93996 0.97222 1.22260 1.13931 0.89841 0.91445 1.41772 1.42239 1.08825 1.07707 1.22622 1.01223 1.00500 0.82396 1.21307 1.01884 0.90731 1.02758 1.21516 0.96631 1.01871 0.91454 1.20697 1.03139 0.93332 0.97952 1.18640 1.03555 0.90410 0.89457 0.92788 0.90924 0.93683 0.92206 0.93211 0.90871 0.89052 0.82010 0.76400 0.77241 0.79095 0.82079 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.75 8.66 71.98 0.62 -6.13 16 2 C 0.23 12.15 2.22 44.25 0.10 12.25 16 3 H 0.03 1.63 5.96 -2.39 -0.01 1.62 16 4 C -0.53 -31.43 8.95 25.60 0.23 -31.20 16 5 H 0.04 2.78 7.89 -2.91 -0.02 2.76 16 6 C 0.02 1.38 5.45 84.66 0.46 1.84 16 7 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 8 Si 0.94 47.00 24.37 68.60 1.67 48.67 16 9 H -0.25 -11.29 6.87 99.48 0.68 -10.60 16 10 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.27 -13.27 6.53 99.48 0.65 -12.63 16 12 N -0.59 -27.44 2.75 -832.00 -2.29 -29.73 16 13 C 0.09 3.24 8.23 127.77 1.05 4.29 16 14 C 0.57 27.24 7.54 86.31 0.65 27.89 16 15 O -0.61 -34.11 16.11 -4.59 -0.07 -34.18 16 16 C -0.27 -10.27 5.43 -19.76 -0.11 -10.38 16 17 C -0.12 -3.39 8.48 22.28 0.19 -3.20 16 18 C -0.05 -1.03 11.53 83.04 0.96 -0.08 16 19 N -0.34 -7.63 2.92 -346.30 -1.01 -8.64 16 20 C 0.05 0.69 10.89 83.19 0.91 1.59 16 21 C -0.15 -1.74 9.98 22.03 0.22 -1.52 16 22 C -0.09 -1.72 10.09 22.33 0.23 -1.50 16 23 C -0.13 -3.86 9.95 22.32 0.22 -3.63 16 24 C 0.09 2.85 6.70 39.43 0.26 3.12 16 25 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.07 2.95 6.66 -2.38 -0.02 2.94 16 27 H 0.04 2.03 3.27 -2.39 -0.01 2.02 16 28 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.05 1.77 7.32 -2.39 -0.02 1.75 16 30 H 0.07 2.57 6.44 -2.39 -0.02 2.55 16 31 H 0.09 2.71 5.86 -2.38 -0.01 2.69 16 32 H 0.16 4.19 6.29 -2.91 -0.02 4.17 16 33 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.12 4.04 7.86 -2.91 -0.02 4.02 16 Total: -1.00 -85.28 300.94 5.59 -79.69 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.01 Total: 10.12 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.99 Total: -6.66 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -3.00 Total: -97.63 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.07 Total: -34.18 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.67 kcal Total: -85.28 5.59 -79.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896885006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.209 kcal (2) G-P(sol) polarization free energy of solvation -85.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds