Wall clock time and date at job start Mon Mar 30 2020 01:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 H 1.09001 * 109.47087 * 304.99971 * 3 2 1 5 5 C 1.50703 * 109.47098 * 184.99699 * 3 2 1 6 6 H 1.07999 * 120.00194 * 239.99724 * 5 3 2 7 7 C 1.37878 * 119.99816 * 60.00165 * 5 3 2 8 8 N 1.31516 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00107 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47344 * 59.99704 * 9 7 5 11 11 H 1.48501 * 109.47380 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47089 * 299.99897 * 9 7 5 13 13 N 1.46506 * 109.47169 * 65.00087 * 3 2 1 14 14 C 1.34780 * 119.99687 * 274.99794 * 13 3 2 15 15 O 1.21770 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.46212 * 119.99833 * 179.97438 * 14 13 3 17 17 C 1.41736 * 126.79642 * 359.97438 * 16 14 13 18 18 C 1.34520 * 107.77513 * 180.02562 * 17 16 14 19 19 N 1.36952 * 109.60271 * 0.02562 * 18 17 16 20 20 C 1.36707 * 131.35135 * 180.02562 * 19 18 17 21 21 C 1.35006 * 120.75294 * 179.97438 * 20 19 18 22 22 C 1.40303 * 120.38359 * 359.97438 * 21 20 19 23 23 C 1.36347 * 119.45467 * 359.79215 * 22 21 20 24 24 C 1.36945 * 108.74167 * 0.02562 * 19 18 17 25 25 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46688 * 300.00278 * 1 2 3 27 27 H 1.08996 * 109.46914 * 60.00073 * 1 2 3 28 28 H 1.08999 * 109.47134 * 239.99525 * 2 1 3 29 29 H 1.09001 * 109.46607 * 120.00249 * 2 1 3 30 30 H 0.97003 * 119.99911 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00157 * 95.00106 * 13 3 2 32 32 H 1.08000 * 126.11562 * 359.96705 * 17 16 14 33 33 H 1.08000 * 125.20322 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.62385 * 359.93078 * 20 19 18 35 35 H 1.08002 * 119.80453 * 180.02562 * 21 20 19 36 36 H 1.07996 * 120.27028 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.33726 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1451 -0.2342 11 1 6.3979 0.2166 -2.6503 12 1 6.5006 2.2798 -1.3807 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3426 2.6318 0.4306 16 6 0.0482 3.3177 2.6165 17 6 0.8335 3.4380 3.7902 18 6 0.1065 4.1057 4.7041 19 7 -1.1162 4.4236 4.1755 20 6 -2.1849 5.0895 4.7078 21 6 -3.3060 5.2876 3.9823 22 6 -3.3922 4.8117 2.6652 23 6 -2.3317 4.1501 2.1206 24 6 -1.1776 3.9491 2.8923 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8294 -0.0613 -2.9498 31 1 2.2720 2.1232 1.9978 32 1 1.8360 3.0602 3.9269 33 1 0.4363 4.3526 5.7025 34 1 -2.1319 5.4608 5.7206 35 1 -4.1410 5.8161 4.4180 36 1 -4.2898 4.9715 2.0863 37 1 -2.3828 3.7774 1.1082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:10 Heat of formation + Delta-G solvation = 32.940191 kcal Electronic energy + Delta-G solvation = -20434.398894 eV Core-core repulsion = 17370.550566 eV Total energy + Delta-G solvation = -3063.848329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.15734 -38.56527 -36.51438 -34.87752 -32.85944 -32.22569 -30.86428 -29.83125 -27.98571 -26.69733 -23.71617 -23.38412 -22.35878 -21.35153 -19.88786 -19.09614 -17.83709 -16.70799 -16.22450 -15.64380 -15.44834 -15.20862 -15.05435 -14.28439 -14.24403 -14.11505 -13.33249 -12.83264 -12.61270 -12.54090 -11.91378 -11.79133 -11.59596 -11.43413 -11.28477 -11.15897 -10.91368 -10.74964 -10.25151 -10.21199 -10.05363 -9.51659 -8.96551 -8.86347 -8.62706 -8.40529 -7.69570 -7.20845 -6.04332 -4.13097 0.78460 1.28366 2.62097 2.67847 3.30585 3.35586 3.37040 3.42333 4.28307 4.35575 4.41397 4.59009 4.75090 4.81822 5.01764 5.13481 5.26858 5.30120 5.61939 5.73100 5.87265 5.98793 6.20962 6.36117 6.39277 6.50220 6.58671 6.77693 6.82005 6.92982 7.17533 7.25037 7.33412 7.49628 7.62550 7.72524 7.88042 8.02530 8.28534 8.84094 8.91734 9.34891 9.55560 11.00997 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031702 B = 0.004437 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.000868 B = 6309.350144 C = 6826.365264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.704 5.704 14 C 0.576 3.424 15 O -0.561 6.561 16 C -0.219 4.219 17 C -0.109 4.109 18 C -0.070 4.070 19 N -0.341 5.341 20 C 0.041 3.959 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.067 4.067 24 C 0.098 3.902 25 H 0.020 0.980 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 8.205 14.493 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.363 3.637 15 O -0.442 6.442 16 C -0.229 4.229 17 C -0.131 4.131 18 C -0.195 4.195 19 N -0.006 5.006 20 C -0.080 4.080 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.086 4.086 24 C -0.010 4.010 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.171 0.829 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.624 8.174 13.814 19.249 hybrid contribution 1.337 0.021 0.453 1.412 sum -9.288 8.195 14.267 18.893 Atomic orbital electron populations 1.21836 0.98369 0.97828 1.01369 1.21926 0.92647 0.99881 1.02102 1.18745 0.93982 0.89116 0.81139 0.93309 1.21224 0.90865 1.38801 1.06193 0.92199 1.24875 0.98454 0.94903 0.95431 1.69893 1.35102 1.37713 1.09339 0.86537 0.85083 0.78253 0.77371 1.20210 1.21199 1.20240 1.46256 1.14443 1.55997 1.18319 1.16956 0.82637 0.78459 0.85652 1.90730 1.51810 1.61350 1.40326 1.19854 0.94409 1.11473 0.97171 1.21111 0.99770 0.99918 0.92267 1.21610 0.84944 1.11577 1.01359 1.41500 1.11484 1.35876 1.11718 1.21590 0.87134 0.99329 0.99978 1.20718 0.97396 1.02923 0.95316 1.21066 0.99317 0.99769 0.95283 1.20957 0.90002 0.96799 1.00853 1.18677 0.96499 1.01314 0.84544 0.96092 0.94087 0.93179 0.88412 0.95152 0.92610 0.78137 0.82921 0.81303 0.82339 0.83880 0.84753 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.19 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 7.07 2.24 -69.08 -0.15 6.91 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.12 11.29 55.43 0.63 -24.49 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.70 -15.51 5.01 -56.38 -0.28 -15.79 16 14 C 0.58 12.49 6.34 -13.06 -0.08 12.41 16 15 O -0.56 -13.65 12.79 5.13 0.07 -13.58 16 16 C -0.22 -3.96 6.20 -104.46 -0.65 -4.60 16 17 C -0.11 -1.56 10.27 -39.56 -0.41 -1.97 16 18 C -0.07 -0.84 11.53 -16.58 -0.19 -1.04 16 19 N -0.34 -4.49 2.92 -60.81 -0.18 -4.67 16 20 C 0.04 0.40 10.89 -16.53 -0.18 0.22 16 21 C -0.14 -1.30 9.98 -39.95 -0.40 -1.70 16 22 C -0.13 -1.48 10.09 -39.49 -0.40 -1.88 16 23 C -0.07 -1.00 9.72 -39.49 -0.38 -1.39 16 24 C 0.10 1.60 6.70 -83.92 -0.56 1.04 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.95 5.64 -51.93 -0.29 0.65 16 27 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 28 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 7.50 7.51 -40.82 -0.31 7.20 16 32 H 0.15 1.86 7.53 -52.49 -0.40 1.47 16 33 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.16 2.53 7.07 -52.49 -0.37 2.16 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -32.37 308.47 -8.32 -40.69 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.55 Total: 8.47 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -3.63 Total: -11.15 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.17 Total: -44.95 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.07 Total: -13.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.37 -8.32 -40.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.632 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds