Wall clock time and date at job start Mon Mar 30 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 H 1.09001 * 109.47087 * 304.99971 * 3 2 1 5 5 C 1.50703 * 109.47098 * 184.99699 * 3 2 1 6 6 H 1.07999 * 120.00194 * 239.99724 * 5 3 2 7 7 C 1.37878 * 119.99816 * 60.00165 * 5 3 2 8 8 N 1.31516 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00107 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47344 * 59.99704 * 9 7 5 11 11 H 1.48501 * 109.47380 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47089 * 299.99897 * 9 7 5 13 13 N 1.46506 * 109.47169 * 65.00087 * 3 2 1 14 14 C 1.34780 * 119.99687 * 274.99794 * 13 3 2 15 15 O 1.21770 * 120.00026 * 0.02562 * 14 13 3 16 16 C 1.46212 * 119.99833 * 179.97438 * 14 13 3 17 17 C 1.41736 * 126.79642 * 359.97438 * 16 14 13 18 18 C 1.34520 * 107.77513 * 180.02562 * 17 16 14 19 19 N 1.36952 * 109.60271 * 0.02562 * 18 17 16 20 20 C 1.36707 * 131.35135 * 180.02562 * 19 18 17 21 21 C 1.35006 * 120.75294 * 179.97438 * 20 19 18 22 22 C 1.40303 * 120.38359 * 359.97438 * 21 20 19 23 23 C 1.36347 * 119.45467 * 359.79215 * 22 21 20 24 24 C 1.36945 * 108.74167 * 0.02562 * 19 18 17 25 25 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46688 * 300.00278 * 1 2 3 27 27 H 1.08996 * 109.46914 * 60.00073 * 1 2 3 28 28 H 1.08999 * 109.47134 * 239.99525 * 2 1 3 29 29 H 1.09001 * 109.46607 * 120.00249 * 2 1 3 30 30 H 0.97003 * 119.99911 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00157 * 95.00106 * 13 3 2 32 32 H 1.08000 * 126.11562 * 359.96705 * 17 16 14 33 33 H 1.08000 * 125.20322 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.62385 * 359.93078 * 20 19 18 35 35 H 1.08002 * 119.80453 * 180.02562 * 21 20 19 36 36 H 1.07996 * 120.27028 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.33726 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1451 -0.2342 11 1 6.3979 0.2166 -2.6503 12 1 6.5006 2.2798 -1.3807 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3426 2.6318 0.4306 16 6 0.0482 3.3177 2.6165 17 6 0.8335 3.4380 3.7902 18 6 0.1065 4.1057 4.7041 19 7 -1.1162 4.4236 4.1755 20 6 -2.1849 5.0895 4.7078 21 6 -3.3060 5.2876 3.9823 22 6 -3.3922 4.8117 2.6652 23 6 -2.3317 4.1501 2.1206 24 6 -1.1776 3.9491 2.8923 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8294 -0.0613 -2.9498 31 1 2.2720 2.1232 1.9978 32 1 1.8360 3.0602 3.9269 33 1 0.4363 4.3526 5.7025 34 1 -2.1319 5.4608 5.7206 35 1 -4.1410 5.8161 4.4180 36 1 -4.2898 4.9715 2.0863 37 1 -2.3828 3.7774 1.1082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:09 Heat of formation + Delta-G solvation = 12.662761 kcal Electronic energy + Delta-G solvation = -20435.278190 eV Core-core repulsion = 17370.550566 eV Total energy + Delta-G solvation = -3064.727624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.16807 -40.27094 -37.47758 -36.80747 -34.24673 -33.90112 -32.71422 -30.86346 -29.37440 -28.41389 -25.28581 -24.52919 -23.96059 -22.33144 -21.67001 -20.82022 -19.17643 -18.17364 -17.47276 -16.96019 -16.79626 -16.53897 -16.44215 -15.97050 -15.75631 -15.25030 -14.81590 -14.57243 -13.98549 -13.75871 -13.60444 -13.41411 -13.15072 -12.91193 -12.74377 -12.63850 -12.48254 -12.22829 -12.16279 -12.03173 -11.58583 -11.29417 -11.03869 -10.63283 -10.47222 -9.63400 -9.53015 -8.28435 -8.13391 -6.31154 -0.18076 0.31199 1.44843 1.46301 1.48114 1.55663 1.73876 2.40102 2.44162 2.87114 2.89482 3.15610 3.65110 3.90147 3.99570 4.07264 4.21358 4.31689 4.49590 4.55012 4.58016 4.76972 4.83262 4.91275 4.97809 5.09125 5.24686 5.29246 5.36065 5.42531 5.46975 5.58431 5.69460 5.69848 5.83309 5.90628 6.01773 6.19816 6.38933 6.76786 7.14655 7.36261 7.72821 8.92001 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031702 B = 0.004437 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.000868 B = 6309.350144 C = 6826.365264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.973 3.027 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.703 5.703 14 C 0.571 3.429 15 O -0.602 6.602 16 C -0.282 4.282 17 C -0.118 4.118 18 C -0.055 4.055 19 N -0.342 5.342 20 C 0.050 3.950 21 C -0.146 4.146 22 C -0.098 4.098 23 C -0.129 4.129 24 C 0.091 3.909 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.399 0.601 32 H 0.166 0.834 33 H 0.218 0.782 34 H 0.211 0.789 35 H 0.192 0.808 36 H 0.160 0.840 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.537 9.877 18.433 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.351 5.351 14 C 0.362 3.638 15 O -0.487 6.487 16 C -0.291 4.291 17 C -0.140 4.140 18 C -0.179 4.179 19 N -0.006 5.006 20 C -0.070 4.070 21 C -0.166 4.166 22 C -0.119 4.119 23 C -0.148 4.148 24 C -0.019 4.019 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.233 0.767 32 H 0.184 0.816 33 H 0.235 0.765 34 H 0.227 0.773 35 H 0.209 0.791 36 H 0.178 0.822 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.103 9.855 17.806 23.183 hybrid contribution 1.244 -0.348 -0.679 1.459 sum -9.860 9.507 17.127 21.930 Atomic orbital electron populations 1.21651 0.97173 0.98892 1.00106 1.21771 0.93618 0.99240 1.01146 1.18333 0.93634 0.89043 0.81273 0.98752 1.21556 0.91367 1.39034 1.06814 0.91197 1.25799 1.03515 0.94287 0.94896 1.70056 1.37181 1.38321 1.09837 0.85394 0.78849 0.78428 0.77620 1.18795 1.21036 1.19719 1.45997 1.15278 1.56437 1.17396 1.17558 0.81716 0.77736 0.86782 1.90686 1.52812 1.62950 1.42268 1.19565 0.97079 1.15481 0.96983 1.21344 1.00513 1.00592 0.91508 1.22260 0.83816 1.09426 1.02350 1.41810 1.12760 1.35566 1.10478 1.22617 0.85719 0.96830 1.01881 1.21310 0.98818 1.02457 0.93982 1.21541 0.98307 0.95679 0.96395 1.20820 0.92075 1.01427 1.00437 1.18749 0.96085 1.00824 0.86250 0.93602 0.94247 0.95558 0.90832 0.94273 0.92594 0.76662 0.81614 0.76498 0.77255 0.79101 0.82200 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.51 71.98 0.61 -5.35 16 2 C -0.12 -6.30 5.45 30.60 0.17 -6.13 16 3 C 0.28 15.54 2.24 44.24 0.10 15.64 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -30.67 8.73 25.60 0.22 -30.44 16 6 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 7 C 0.01 0.83 5.29 84.65 0.45 1.28 16 8 N -0.92 -54.23 11.29 21.45 0.24 -53.99 16 9 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.70 -33.00 5.01 -450.46 -2.26 -35.26 16 14 C 0.57 26.78 6.34 86.31 0.55 27.32 16 15 O -0.60 -32.33 12.79 -4.57 -0.06 -32.39 16 16 C -0.28 -10.62 6.20 -19.76 -0.12 -10.74 16 17 C -0.12 -3.32 10.27 22.28 0.23 -3.09 16 18 C -0.05 -1.15 11.53 83.04 0.96 -0.19 16 19 N -0.34 -7.99 2.92 -346.29 -1.01 -9.01 16 20 C 0.05 0.70 10.89 83.19 0.91 1.61 16 21 C -0.15 -1.91 9.98 22.03 0.22 -1.69 16 22 C -0.10 -1.96 10.09 22.33 0.23 -1.74 16 23 C -0.13 -3.98 9.72 22.33 0.22 -3.76 16 24 C 0.09 3.02 6.70 39.42 0.26 3.28 16 25 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 27 H 0.03 1.37 7.84 -2.39 -0.02 1.35 16 28 H 0.07 4.27 5.95 -2.39 -0.01 4.26 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.40 16.21 7.51 -92.71 -0.70 15.52 16 32 H 0.17 3.93 7.53 -2.91 -0.02 3.91 16 33 H 0.22 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.12 4.51 7.07 -2.91 -0.02 4.49 16 Total: -1.00 -78.24 308.47 4.32 -73.92 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.39 Total: 25.32 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.99 Total: -14.00 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -3.03 Total: -98.25 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.06 Total: -32.39 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -78.24 4.32 -73.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.579 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds