Wall clock time and date at job start Mon Mar 30 2020 01:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21775 * 119.99899 * 359.97438 * 14 13 3 16 16 C 1.46213 * 119.99478 * 179.97438 * 14 13 3 17 17 C 1.41734 * 126.80205 * 359.68444 * 16 14 13 18 18 C 1.34523 * 107.77657 * 179.88792 * 17 16 14 19 19 N 1.36959 * 109.59870 * 0.38236 * 18 17 16 20 20 C 1.36702 * 131.34194 * 179.77852 * 19 18 17 21 21 C 1.35004 * 120.75100 * 179.97438 * 20 19 18 22 22 C 1.40306 * 120.38298 * 359.97438 * 21 20 19 23 23 C 1.36351 * 119.45390 * 0.05899 * 22 21 20 24 24 C 1.36938 * 108.74203 * 359.75915 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08005 * 126.10995 * 0.02562 * 17 16 14 33 33 H 1.07993 * 125.19691 * 180.13882 * 18 17 16 34 34 H 1.07995 * 119.62675 * 359.95869 * 20 19 18 35 35 H 1.08003 * 119.81109 * 180.02562 * 21 20 19 36 36 H 1.07992 * 120.27851 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.33790 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3427 2.6318 -0.4307 16 6 0.0486 3.3184 -2.6163 17 6 0.8368 3.4455 -3.7874 18 6 0.1084 4.1098 -4.7026 19 7 -1.1147 4.4270 -4.1742 20 6 -2.1832 5.0930 -4.7067 21 6 -3.3051 5.2894 -3.9819 22 6 -3.3926 4.8109 -2.6659 23 6 -2.3337 4.1455 -2.1226 24 6 -1.1766 3.9513 -2.8916 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 1.8417 3.0732 -3.9217 33 1 0.4392 4.3587 -5.7001 34 1 -2.1292 5.4665 -5.7186 35 1 -4.1404 5.8173 -4.4179 36 1 -4.2907 4.9693 -2.0875 37 1 -2.3855 3.7715 -1.1108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:12 Heat of formation + Delta-G solvation = 12.648851 kcal Electronic energy + Delta-G solvation = -20435.111148 eV Core-core repulsion = 17370.382921 eV Total energy + Delta-G solvation = -3064.728227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.16821 -40.27004 -37.47740 -36.80702 -34.24653 -33.90116 -32.71402 -30.86365 -29.37428 -28.41370 -25.28539 -24.52930 -23.96025 -22.33141 -21.67003 -20.82006 -19.17654 -18.17360 -17.47263 -16.95985 -16.79613 -16.53983 -16.44187 -15.96913 -15.75761 -15.25022 -14.81640 -14.57210 -13.98420 -13.75953 -13.60416 -13.41379 -13.15077 -12.91189 -12.74374 -12.63859 -12.48277 -12.22792 -12.16295 -12.03161 -11.58557 -11.29405 -11.03883 -10.63281 -10.47233 -9.63397 -9.52998 -8.28422 -8.13398 -6.31143 -0.18071 0.31185 1.44815 1.46288 1.48105 1.55664 1.73881 2.40068 2.44161 2.87147 2.89437 3.15606 3.65128 3.90139 3.99584 4.07245 4.21360 4.31686 4.49555 4.55006 4.58074 4.77006 4.83263 4.91283 4.97806 5.09126 5.24675 5.29246 5.36058 5.42527 5.46957 5.58445 5.69469 5.69855 5.83339 5.90625 6.01789 6.19832 6.38923 6.76791 7.14648 7.36257 7.72813 8.92004 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031693 B = 0.004437 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.267888 B = 6308.524632 C = 6826.847604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.973 3.027 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.263 1.263 13 N -0.703 5.703 14 C 0.571 3.429 15 O -0.602 6.602 16 C -0.282 4.282 17 C -0.118 4.118 18 C -0.055 4.055 19 N -0.342 5.342 20 C 0.050 3.950 21 C -0.146 4.146 22 C -0.098 4.098 23 C -0.129 4.129 24 C 0.091 3.909 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.399 0.601 32 H 0.166 0.834 33 H 0.218 0.782 34 H 0.211 0.789 35 H 0.192 0.808 36 H 0.160 0.840 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 9.892 -18.429 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.362 3.638 15 O -0.487 6.487 16 C -0.291 4.291 17 C -0.140 4.140 18 C -0.179 4.179 19 N -0.006 5.006 20 C -0.070 4.070 21 C -0.166 4.166 22 C -0.119 4.119 23 C -0.148 4.148 24 C -0.019 4.019 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.233 0.767 32 H 0.184 0.816 33 H 0.235 0.765 34 H 0.227 0.773 35 H 0.209 0.791 36 H 0.178 0.822 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.096 9.871 -17.801 23.182 hybrid contribution 1.244 -0.347 0.680 1.460 sum -9.852 9.525 -17.121 21.929 Atomic orbital electron populations 1.21651 0.97171 0.98891 1.00106 1.21771 0.93620 0.99243 1.01146 1.18333 0.93634 0.89044 0.81273 0.98753 1.21558 0.91367 1.39038 1.06814 0.91196 1.25800 1.03511 0.94285 0.94896 1.70054 1.37182 1.38322 1.09835 0.85396 0.78853 0.78428 0.77621 1.19719 1.21035 1.18793 1.45998 1.15271 1.56448 1.17391 1.17561 0.81714 0.77743 0.86774 1.90687 1.52811 1.62965 1.42255 1.19564 0.97073 1.15406 0.97064 1.21345 1.00464 1.00619 0.91525 1.22261 0.83763 1.09501 1.02330 1.41809 1.12775 1.35557 1.10471 1.22614 0.85726 0.96824 1.01879 1.21311 0.98803 1.02465 0.93991 1.21542 0.98357 0.95613 0.96408 1.20821 0.92040 1.01430 1.00468 1.18750 0.96086 1.00764 0.86307 0.93604 0.94239 0.95565 0.90834 0.94272 0.92592 0.76660 0.81613 0.76499 0.77256 0.79101 0.82200 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.51 71.98 0.61 -5.35 16 2 C -0.12 -6.30 5.45 30.60 0.17 -6.13 16 3 C 0.28 15.54 2.24 44.25 0.10 15.64 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -30.67 8.73 25.60 0.22 -30.45 16 6 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.92 -54.23 11.29 21.45 0.24 -53.98 16 9 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 13 N -0.70 -33.00 5.01 -450.46 -2.26 -35.26 16 14 C 0.57 26.77 6.34 86.31 0.55 27.32 16 15 O -0.60 -32.33 12.79 -4.59 -0.06 -32.39 16 16 C -0.28 -10.62 6.20 -19.76 -0.12 -10.74 16 17 C -0.12 -3.32 10.27 22.28 0.23 -3.09 16 18 C -0.05 -1.15 11.53 83.04 0.96 -0.19 16 19 N -0.34 -7.99 2.92 -346.30 -1.01 -9.01 16 20 C 0.05 0.70 10.89 83.19 0.91 1.61 16 21 C -0.15 -1.91 9.98 22.03 0.22 -1.69 16 22 C -0.10 -1.96 10.09 22.33 0.23 -1.73 16 23 C -0.13 -3.98 9.72 22.33 0.22 -3.76 16 24 C 0.09 3.02 6.70 39.43 0.26 3.28 16 25 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.94 5.64 -2.39 -0.01 1.92 16 27 H 0.03 1.37 7.84 -2.38 -0.02 1.35 16 28 H 0.07 4.27 5.95 -2.39 -0.01 4.26 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.40 16.21 7.51 -92.71 -0.70 15.52 16 32 H 0.17 3.93 7.53 -2.91 -0.02 3.91 16 33 H 0.22 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.12 4.51 7.07 -2.91 -0.02 4.49 16 Total: -1.00 -78.24 308.47 4.32 -73.92 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.39 Total: 25.32 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.99 Total: -14.00 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -3.03 Total: -98.25 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.06 Total: -32.39 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -78.24 4.32 -73.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.565 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds